메뉴 건너뛰기




Volumn 12, Issue 11, 2003, Pages 2588-2596

The solution structure of the bacterial HSP70 chaperone protein domain DnaK(393-507) in complex with the peptide NRLLLTG

Author keywords

Allosteric; DnaK; Dynamics; Hsp70; NMR; Solution structure

Indexed keywords

ASPARAGINYLARGINYLLEUCYLLEUCYLLEUCYLTHREONYLGLYCINE; CHAPERONE; HEAT SHOCK PROTEIN 70; UNCLASSIFIED DRUG;

EID: 0142148040     PISSN: 09618368     EISSN: None     Source Type: Journal    
DOI: 10.1110/ps.03269103     Document Type: Article
Times cited : (96)

References (41)
  • 1
    • 0001144784 scopus 로고    scopus 로고
    • Monitoring macromolecular motions on microsecond to millisecond time scales by R1-R1 constant relaxation time NMR spectroscopy
    • Akke, M. and Palmer III, A.G. 1996. Monitoring macromolecular motions on microsecond to millisecond time scales by R1-R1 constant relaxation time NMR spectroscopy. J. Am. Chem. Soc. 118: 911-912.
    • (1996) J. Am. Chem. Soc. , vol.118 , pp. 911-912
    • Akke, M.1    Palmer A.G. III2
  • 2
    • 0343459675 scopus 로고
    • The program XEASY for computer-supported NMR spectral analysis of biological macromolecules
    • Bartels, C., Xia, T., Billeter, M., Güntert, P., and Wüthrich, K. 1995. The program XEASY for computer-supported NMR spectral analysis of biological macromolecules. J. Biomol. NMR 6: 1-10.
    • (1995) J. Biomol. NMR , vol.6 , pp. 1-10
    • Bartels, C.1    Xia, T.2    Billeter, M.3    Güntert, P.4    Wüthrich, K.5
  • 4
    • 0027164203 scopus 로고
    • Peptide-dependent stimulation of the ATPase activity of the molecular chaperone BiP is the result of conversion of oligomers to active monomers
    • Blond-Elguindi, S., Fourie, A.M., Sambrook, J.F., and Gething, M.-J.H. 1993. Peptide-dependent stimulation of the ATPase activity of the molecular chaperone BiP is the result of conversion of oligomers to active monomers. J. Biol. Chem. 268: 12730-12735.
    • (1993) J. Biol. Chem. , vol.268 , pp. 12730-12735
    • Blond-Elguindi, S.1    Fourie, A.M.2    Sambrook, J.F.3    Gething, M.-J.H.4
  • 5
    • 0029037015 scopus 로고
    • Nucleotide-induced conformational changes in the ATPase and substrate binding domains of the DnaK chaperone provide evidence for interdomain communication
    • Buchberger, A., Theyssen, H., Schröder, H., McCarty, J.S., Virgallita, G., Milkereit, P., Reinstein, J., and Bukau, B. 1995. Nucleotide-induced conformational changes in the ATPase and substrate binding domains of the DnaK chaperone provide evidence for interdomain communication. J. Biol. Chem. 270: 16903-16910.
    • (1995) J. Biol. Chem. , vol.270 , pp. 16903-16910
    • Buchberger, A.1    Theyssen, H.2    Schröder, H.3    McCarty, J.S.4    Virgallita, G.5    Milkereit, P.6    Reinstein, J.7    Bukau, B.8
  • 6
    • 0035920236 scopus 로고    scopus 로고
    • Characterization of a lidless form of the molecular chaperone DnaK
    • Buczynski, G., Slepenkov, S.V., Sehom, M.G., and Witt, S.N. 2001. Characterization of a lidless form of the molecular chaperone DnaK. J. Biol. Chem. 276: 27231-27236.
    • (2001) J. Biol. Chem. , vol.276 , pp. 27231-27236
    • Buczynski, G.1    Slepenkov, S.V.2    Sehom, M.G.3    Witt, S.N.4
  • 7
    • 0032489016 scopus 로고    scopus 로고
    • The Hsp70 and Hsp60 chaperone machines
    • Bukau, B. and Horwich, A.L. 1998. The Hsp70 and Hsp60 chaperone machines. Cell 92: 351-366.
    • (1998) Cell , vol.92 , pp. 351-366
    • Bukau, B.1    Horwich, A.L.2
  • 9
    • 0141456396 scopus 로고    scopus 로고
    • Solvent interaction of a Hsp70 chaperone substrate-binding domain investigated with Water-NOE NMR experiments
    • in press
    • Cai, S., Stevens, S.Y., Budor, A.P., and Zuiderweg, E.R.P. 2003. Solvent interaction of a Hsp70 chaperone substrate-binding domain investigated with Water-NOE NMR experiments. Biochemistry (in press).
    • (2003) Biochemistry
    • Cai, S.1    Stevens, S.Y.2    Budor, A.P.3    Zuiderweg, E.R.P.4
  • 11
    • 0027300506 scopus 로고
    • Heat-shock proteins-Molecular chaperones of protein biogenesis
    • Craig, E.A., Gambill, B.D., and Nelson, R.J. 1993. Heat-shock proteins-Molecular chaperones of protein biogenesis. Microbiol. Rev. 57: 402-414.
    • (1993) Microbiol. Rev. , vol.57 , pp. 402-414
    • Craig, E.A.1    Gambill, B.D.2    Nelson, R.J.3
  • 13
    • 0029400480 scopus 로고
    • NMRPipe: A multidimensional spectral processing system based on UNIX pipes
    • Delaglio, F., Grzesiek, W., Vuister, G., Zhu, G., Pfeiffer, J., and Bax, A. 1995. NMRPipe: A multidimensional spectral processing system based on UNIX pipes. J. Biomol. NMR 6: 277-293.
    • (1995) J. Biomol. NMR , vol.6 , pp. 277-293
    • Delaglio, F.1    Grzesiek, W.2    Vuister, G.3    Zhu, G.4    Pfeiffer, J.5    Bax, A.6
  • 14
    • 0025361336 scopus 로고
    • Heteronuclear three-dimensional NMR spectroscopy of isotopically labeled biological macromolecules
    • Fesik, S.W. and Zuiderweg, E.R.P. 1990. Heteronuclear three-dimensional NMR spectroscopy of isotopically labeled biological macromolecules. Q. Rev. Biophys. 23: 97-131.
    • (1990) Q. Rev. Biophys. , vol.23 , pp. 97-131
    • Fesik, S.W.1    Zuiderweg, E.R.P.2
  • 16
    • 12044252858 scopus 로고
    • Methodological advances in protein NMR
    • Grzesiek, S. and Bax, A. 1993. Methodological advances in protein NMR. Acc. Chem. Res. 26: 131-138.
    • (1993) Acc. Chem. Res. , vol.26 , pp. 131-138
    • Grzesiek, S.1    Bax, A.2
  • 17
    • 0000088628 scopus 로고
    • Processing of multidimensional NMR data with the new software PROSA
    • Güntert, P., Dotsch, V., Wider, G., and Wüthrich, K. 1992. Processing of multidimensional NMR data with the new software PROSA. J. Biomol. NMR 2: 619-629.
    • (1992) J. Biomol. NMR , vol.2 , pp. 619-629
    • Güntert, P.1    Dotsch, V.2    Wider, G.3    Wüthrich, K.4
  • 18
    • 34249765651 scopus 로고
    • NMR View: A computer program for the visualization and analysis of NMR data
    • Johnson, B.A. and Blevins, R.A. 1994. NMR View: A computer program for the visualization and analysis of NMR data. J. Biomol. NMR 6: 277-293.
    • (1994) J. Biomol. NMR , vol.6 , pp. 277-293
    • Johnson, B.A.1    Blevins, R.A.2
  • 19
    • 0029881007 scopus 로고    scopus 로고
    • MOLMOL: A program for display and analysis of macromolecular structures
    • Koradi, R., Billeter, M., and Wüthrich, K. 1996. MOLMOL: A program for display and analysis of macromolecular structures. J. Mol. Graphics 14: 52-55.
    • (1996) J. Mol. Graphics , vol.14 , pp. 52-55
    • Koradi, R.1    Billeter, M.2    Wüthrich, K.3
  • 20
    • 0000243829 scopus 로고
    • PROCHECK: A program to check the stereochemical quality of protein structures
    • Laskowski, R.A., MacArthur, M.W., Moss, D.S., and Thornton, J.M. 1993. PROCHECK: A program to check the stereochemical quality of protein structures. J. Appl. Cryst. 26: 283-291.
    • (1993) J. Appl. Cryst. , vol.26 , pp. 283-291
    • Laskowski, R.A.1    MacArthur, M.W.2    Moss, D.S.3    Thornton, J.M.4
  • 21
    • 0022555843 scopus 로고
    • The heat-shock response
    • Lindquist, S. 1986. The heat-shock response. Annu. Rev. Biochem. 55: 1151-1191.
    • (1986) Annu. Rev. Biochem. , vol.55 , pp. 1151-1191
    • Lindquist, S.1
  • 23
    • 0028941877 scopus 로고
    • Backbone dynamics of Escherichia coli ribonuclease HI: Correlations with structure and function in an active enzyme
    • Mandel, A.M., Akke, M., and Palmer III, A.G. 1995. Backbone dynamics of Escherichia coli ribonuclease HI: Correlations with structure and function in an active enzyme. J. Mol. Biol. 246: 144-163.
    • (1995) J. Mol. Biol. , vol.246 , pp. 144-163
    • Mandel, A.M.1    Akke, M.2    Palmer A.G. III3
  • 24
    • 0029013908 scopus 로고
    • The role of ATP in the functional cycle of the DnaK chaperone system
    • McCarty, J.S., Buchberger, A., Reinstein, J., and Bukau, B. 1995. The role of ATP in the functional cycle of the DnaK chaperone system. J. Mol. Biol. 249: 126-137.
    • (1995) J. Mol. Biol. , vol.249 , pp. 126-137
    • McCarty, J.S.1    Buchberger, A.2    Reinstein, J.3    Bukau, B.4
  • 25
    • 0032214832 scopus 로고    scopus 로고
    • J-proteins catalytically activate Hsp70 molecules to trap a wide range of peptide sequences
    • Misselwitz, B., Staeck, O., and Rapoport, T.A. 1998. J-proteins catalytically activate Hsp70 molecules to trap a wide range of peptide sequences. Mol. Cell. 2: 593-603.
    • (1998) Mol. Cell , vol.2 , pp. 593-603
    • Misselwitz, B.1    Staeck, O.2    Rapoport, T.A.3
  • 26
    • 0033605086 scopus 로고    scopus 로고
    • Mutations in the substrate binding domain of the E. coli 70 kDa molecular chaperone, DnaK, which alter substrate affinity or interdomain coupling
    • Montgomery, D.L., Morimoto, R.I., and Gierasch, L.M. 1999. Mutations in the substrate binding domain of the E. coli 70 kDa molecular chaperone, DnaK, which alter substrate affinity or interdomain coupling. J. Mol. Biol. 286: 915-932.
    • (1999) J. Mol. Biol. , vol.286 , pp. 915-932
    • Montgomery, D.L.1    Morimoto, R.I.2    Gierasch, L.M.3
  • 27
    • 0033603631 scopus 로고    scopus 로고
    • High resolution NMR solution structure of the substrate-binding domain of the mammalian chaperone protein Hsc70
    • Morshauser, R.C., Wang, H., Hu, W., Pang, Y., Flynn, G., and Zuiderweg, E.R.P. 1999. High resolution NMR solution structure of the substrate-binding domain of the mammalian chaperone protein Hsc70. J. Mol. Biol. 289: 1387-1403.
    • (1999) J. Mol. Biol. , vol.289 , pp. 1387-1403
    • Morshauser, R.C.1    Wang, H.2    Hu, W.3    Pang, Y.4    Flynn, G.5    Zuiderweg, E.R.P.6
  • 28
    • 0028044572 scopus 로고
    • Backbone dynamics of (1-71)bacterioopsin studied by two-dimensional 1H-15N NMR spectroscopy
    • Orekhov, V.Y., Pervushin, K.V., and Arseniev, A.S. 1994. Backbone dynamics of (1-71)bacterioopsin studied by two-dimensional 1H-15N NMR spectroscopy. Eur. J. Biochem. 219: 887-896
    • (1994) Eur. J. Biochem. , vol.219 , pp. 887-896
    • Orekhov, V.Y.1    Pervushin, K.V.2    Arseniev, A.S.3
  • 30
    • 0032549525 scopus 로고    scopus 로고
    • Control of the DnaK chaperone cycle by substoichiometric concentrations of the co-chaperones DnaJ and GrpE
    • Pierpaoli, E.V., Sandmeier, E., Schönfeld, H.-J., Gisler, S., and Christen, P. 1998. Control of the DnaK chaperone cycle by substoichiometric concentrations of the co-chaperones DnaJ and GrpE. J. Biol. Chem. 273: 6643-6649.
    • (1998) J. Biol. Chem. , vol.273 , pp. 6643-6649
    • Pierpaoli, E.V.1    Sandmeier, E.2    Schönfeld, H.-J.3    Gisler, S.4    Christen, P.5
  • 31
    • 0027482453 scopus 로고
    • Specificity of the E. coli chaperone DnaK (70 kDa heat shock protein) for hydrophobic amino acids
    • Richarme, G. and Kohiyama, M. 1993. Specificity of the E. coli chaperone DnaK (70 kDa heat shock protein) for hydrophobic amino acids. J. Biol. Chem. 268: 24074-24077.
    • (1993) J. Biol. Chem. , vol.268 , pp. 24074-24077
    • Richarme, G.1    Kohiyama, M.2
  • 32
    • 0030976048 scopus 로고    scopus 로고
    • Substrate specificity of the DnaK chaperone determined by screening cellulose-bound peptide libraries
    • Rüdiger, S., Germeroth, L., Schneider-Mergener, J., and Bukau, B. 1997a. Substrate specificity of the DnaK chaperone determined by screening cellulose-bound peptide libraries. EMBO J. 16: 1501-1507.
    • (1997) EMBO J. , vol.16 , pp. 1501-1507
    • Rüdiger, S.1    Germeroth, L.2    Schneider-Mergener, J.3    Bukau, B.4
  • 33
    • 0041026092 scopus 로고    scopus 로고
    • Interaction of Hsp70 chaperones with substrates
    • RÜdiger, S., Buchberger, A., and Bukau, B. 1997b. Interaction of Hsp70 chaperones with substrates. Nat. Struct. Biol. 4: 342-349.
    • (1997) Nat. Struct. Biol. , vol.4 , pp. 342-349
    • RÜdiger, S.1    Buchberger, A.2    Bukau, B.3
  • 34
    • 0034397884 scopus 로고    scopus 로고
    • Modulation of substrate specificity of the DnaK chaperone by alteration of a hydrophobic arch
    • Rüdiger, S., Mayer, M.P., Schneider-Mergener, J., and Bukau, B. 2000. Modulation of substrate specificity of the DnaK chaperone by alteration of a hydrophobic arch. J. Mol. Biol. 304: 245-251.
    • (2000) J. Mol. Biol. , vol.304 , pp. 245-251
    • Rüdiger, S.1    Mayer, M.P.2    Schneider-Mergener, J.3    Bukau, B.4
  • 35
    • 0034765285 scopus 로고    scopus 로고
    • Delineation of the allosteric mechanism for a cytidylyltransferase exhibiting negative cooperativity
    • Stevens, S.Y., Sanker, S., Kent, C., and Zuiderweg, E.R.P. 2001. Delineation of the allosteric mechanism for a cytidylyltransferase exhibiting negative cooperativity. Nat. Struct. Biol. 8: 947-952.
    • (2001) Nat. Struct. Biol. , vol.8 , pp. 947-952
    • Stevens, S.Y.1    Sanker, S.2    Kent, C.3    Zuiderweg, E.R.P.4
  • 36
    • 0033612301 scopus 로고    scopus 로고
    • The protein import motor of mitochondria: Unfolding and trapping of preproteins are distinct and separable functions of matrix Hsp70
    • Vosine, C., Craig, E.A., Zufall, N., von Ahsen, O., Pfanner, N., and Voos, W. 1999. The protein import motor of mitochondria: Unfolding and trapping of preproteins are distinct and separable functions of matrix Hsp70. Cell 97: 565-574.
    • (1999) Cell , vol.97 , pp. 565-574
    • Vosine, C.1    Craig, E.A.2    Zufall, N.3    Von Ahsen, O.4    Pfanner, N.5    Voos, W.6
  • 37
    • 0032474433 scopus 로고    scopus 로고
    • The solution structure of the chaperone protein DnaK substrate binding domain: A preview of chaperone-protein interaction
    • Wang, H., Pang, Y., Kurochkin, A.V., Hu, W., Flynn, G.C., and Zuiderweg, E.R.P. 1998. The solution structure of the chaperone protein DnaK substrate binding domain: A preview of chaperone-protein interaction. Biochemistry 37: 7929-7940.
    • (1998) Biochemistry , vol.37 , pp. 7929-7940
    • Wang, H.1    Pang, Y.2    Kurochkin, A.V.3    Hu, W.4    Flynn, G.C.5    Zuiderweg, E.R.P.6
  • 38
    • 0028393784 scopus 로고
    • A simple method for the identification of protein secondary structure using C-13 chemical shift data
    • Wishart, D.S. and Sykes, B.D. 1994. A simple method for the identification of protein secondary structure using C-13 chemical shift data. J. Biomol. NMR 4: 171-180.
    • (1994) J. Biomol. NMR , vol.4 , pp. 171-180
    • Wishart, D.S.1    Sykes, B.D.2
  • 41
    • 0028921261 scopus 로고
    • The dissociation of ATP from hsp70 of Saccharomyces cerevisiae is stimulated by both Ydj1p and peptide substrates
    • Ziegelhoffer, T., Lopez-Buesa, P., and Craig, E.A. 1995. The dissociation of ATP from hsp70 of Saccharomyces cerevisiae is stimulated by both Ydj1p and peptide substrates. J. Biol. Chem. 270: 10412-10419.
    • (1995) J. Biol. Chem. , vol.270 , pp. 10412-10419
    • Ziegelhoffer, T.1    Lopez-Buesa, P.2    Craig, E.A.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.