-
1
-
-
0023704386
-
Reconstruction of the three-dimensional structure of simian virus 40 and visualization of chromatin core
-
T.S. Baker, J. Drak, M. Bina, Reconstruction of the three-dimensional structure of simian virus 40 and visualization of chromatin core, Proc. Natl. Acad. Sci. USA 85 (1988) 422-426.
-
(1988)
Proc. Natl. Acad. Sci. USA
, vol.85
, pp. 422-426
-
-
Baker, T.S.1
Drak, J.2
Bina, M.3
-
2
-
-
0029665272
-
A model-based approach for determining orientations of biological macromolecular electron microscopy
-
T.S. Baker, R.H. Cheng, A model-based approach for determining orientations of biological macromolecular electron microscopy, J. Structural Biology 116 (1996) 120-130.
-
(1996)
J. Structural Biology
, vol.116
, pp. 120-130
-
-
Baker, T.S.1
Cheng, R.H.2
-
3
-
-
0002949495
-
A parallel algorithm for determining orientations of biological macromolecules imaged by electron microscopy, CSD-TR #97-055
-
Department of Computer Sciences, Purdue University
-
T.S. Baker, I.M.B. Martin, D.C. Marinescu, A parallel algorithm for determining orientations of biological macromolecules imaged by electron microscopy, CSD-TR #97-055, Department of Computer Sciences, Purdue University, 1997.
-
(1997)
-
-
Baker, T.S.1
Martin, I.M.B.2
Marinescu, D.C.3
-
4
-
-
0032712359
-
Adding the third dimension to virus life cycles: Three-dimensional reconstruction of icosahedral viruses from cryo-electron microscopy
-
T.S. Baker, N.H. Olson, S.D. Fuller, Adding the third dimension to virus life cycles: three-dimensional reconstruction of icosahedral viruses from cryo-electron microscopy, Microbiol. Mol. Biol. Rev. 63 (4) (1999) 862-922.
-
(1999)
Microbiol. Mol. Biol. Rev.
, vol.63
, Issue.4
, pp. 862-922
-
-
Baker, T.S.1
Olson, N.H.2
Fuller, S.D.3
-
5
-
-
84944900419
-
The Bond agent system and applications
-
D. Kotz, F. Mattern (Eds.), Lecture Notes in Computer Science, 1882, Springer, Berlin
-
L. Bölöni, K.K. Jun, K. Palacz, R. Sion, D.C. Marinescu, The Bond agent system and applications, in: D. Kotz, F. Mattern (Eds.), Agent Systems, Mobile Agents, and Applications, Lecture Notes in Computer Science, Vol. 1882, Springer, Berlin, 2000, pp. 99-112.
-
(2000)
Agent Systems, Mobile Agents, and Applications
, pp. 99-112
-
-
Bölöni, L.1
Jun, K.K.2
Palacz, K.3
Sion, R.4
Marinescu, D.C.5
-
6
-
-
0342955723
-
Agent-based scientific simulation and modeling
-
L. Bölöni, D.C. Marinescu, J.R. Rice, P. Tsompanopoulu, E.A. Vavalis, Agent-based scientific simulation and modeling, Concurrency Practice Experience 12 (2000) 845-861.
-
(2000)
Concurrency Practice Experience
, vol.12
, pp. 845-861
-
-
Bölöni, L.1
Marinescu, D.C.2
Rice, J.R.3
Tsompanopoulu, P.4
Vavalis, E.A.5
-
7
-
-
1842409555
-
Determination of the fold of the core protein of hepatitis B virus by electron cryomicroscopy
-
B. Böttcher, S.A. Wynne, R.A. Crowther, Determination of the fold of the core protein of hepatitis B virus by electron cryomicroscopy, Nature (London) 386 (1997) 88-91.
-
(1997)
Nature (London)
, vol.386
, pp. 88-91
-
-
Böttcher, B.1
Wynne, S.A.2
Crowther, R.A.3
-
8
-
-
0000484921
-
Inversion of fan beam scans in radio astronomy
-
R.H. Bracewell, A.C. Riddle, Inversion of fan beam scans in radio astronomy, Astrophys. J. 150 (1967) 427-434.
-
(1967)
Astrophys. J.
, vol.150
, pp. 427-434
-
-
Bracewell, R.H.1
Riddle, A.C.2
-
9
-
-
0004204457
-
Introduction to Protein Structure
-
Garland Publishing, New York, London
-
C. Branden, J. Tooze, Introduction to Protein Structure, Garland Publishing, New York, London, 1991.
-
(1991)
-
-
Branden, C.1
Tooze, J.2
-
10
-
-
0013580834
-
Maximum-likelihood structure refinement: Theory and implementation within BUSTER + TNT
-
E. Dodson, M. Moore, A. Ralph, S. Bailey (Eds.), January 1996, CCLRC Daresbury Laboratory, Daresbury
-
G. Bricogne, J. Irwin, Maximum-likelihood structure refinement: theory and implementation within BUSTER + TNT, in: E. Dodson, M. Moore, A. Ralph, S. Bailey (Eds.), Molecular Refinement: Proceedings CCP4 Study Weekend, January 1996, CCLRC Daresbury Laboratory, Daresbury, 1996, pp. 85-92.
-
(1996)
Molecular Refinement: Proceedings CCP4 Study Weekend
, pp. 85-92
-
-
Bricogne, G.1
Irwin, J.2
-
11
-
-
0028919758
-
Three-dimensional structure of an enveloped alphavirus with T = 4 icosahedral symmetry
-
R.H. Cheng, R.J. Kuhn, N.H. Olson, M.G. Rossmann, H.-K. Choi, T.J. Smith, T.S. Baker, Three-dimensional structure of an enveloped alphavirus with T = 4 icosahedral symmetry, Cell 80 (1995) 621-630.
-
(1995)
Cell
, vol.80
, pp. 621-630
-
-
Cheng, R.H.1
Kuhn, R.J.2
Olson, N.H.3
Rossmann, M.G.4
Choi, H.-K.5
Smith, T.J.6
Baker, T.S.7
-
12
-
-
0027835243
-
Macromolecular electron density averaging on distributed memory MIMD systems
-
M.A. Cornea-Hasegan, D.C. Marinescu, Z. Zhang, J.R. Rice, R.E. Lynch, M.G. Rossmann, Macromolecular electron density averaging on distributed memory MIMD systems, Concurrency Practice Experience 5 (8) (1993) 635-657.
-
(1993)
Concurrency Practice Experience
, vol.5
, Issue.8
, pp. 635-657
-
-
Cornea-Hasegan, M.A.1
Marinescu, D.C.2
Zhang, Z.3
Rice, J.R.4
Lynch, R.E.5
Rossmann, M.G.6
-
13
-
-
0030937751
-
Visualization of a 4-helix bundle in the hepatitis B virus capsid by cryo-electron microscopy
-
J.F. Conway, N. Cheng, A. Zlomick, P.T. Wingfield, S.J. Stahl, A.C. Steven, Visualization of a 4-helix bundle in the hepatitis B virus capsid by cryo-electron microscopy, Nature (London) 386 (1997) 91-94.
-
(1997)
Nature (London)
, vol.386
, pp. 91-94
-
-
Conway, J.F.1
Cheng, N.2
Zlomick, A.3
Wingfield, P.T.4
Stahl, S.J.5
Steven, A.C.6
-
14
-
-
0014894609
-
The reconstruction of a three-dimensional structure from projections and its application to electron microscopy
-
R.A. Crowther, D.J. DeRosier, A. Klug, The reconstruction of a three-dimensional structure from projections and its application to electron microscopy, Proc. Roy. Soc. London A 317 (1970) 319-340.
-
(1970)
Proc. Roy. Soc. London A
, vol.317
, pp. 319-340
-
-
Crowther, R.A.1
DeRosier, D.J.2
Klug, A.3
-
16
-
-
0000668797
-
Reconstruction of three-dimensional structures from electron micrographs
-
D.J. DeRosier, A. King, Reconstruction of three-dimensional structures from electron micrographs, Nature 217 (1967) 130-134.
-
(1967)
Nature
, vol.217
, pp. 130-134
-
-
DeRosier, D.J.1
King, A.2
-
17
-
-
0014945329
-
Reconstruction of three-dimensional images from electron micrographs of structures with helical symmetry
-
D.J. DeRosier, P.B. Moore, Reconstruction of three-dimensional images from electron micrographs of structures with helical symmetry, J. Mol. Biol. 52 (1970) 355-369.
-
(1970)
J. Mol. Biol.
, vol.52
, pp. 355-369
-
-
DeRosier, D.J.1
Moore, P.B.2
-
18
-
-
0034245578
-
Ab initio reconstruction and experimental design for cryo electron microscopy
-
P. Doerschuk, J.E. Johnson, Ab initio reconstruction and experimental design for cryo electron microscopy, IEEE Trans. Inform. Theory 46 (5) (2000) 1714-1729.
-
(2000)
IEEE Trans. Inform. Theory
, vol.46
, Issue.5
, pp. 1714-1729
-
-
Doerschuk, P.1
Johnson, J.E.2
-
19
-
-
0026031904
-
Spot-scan imaging in transmission electron microscopy
-
K.H. Downing, Spot-scan imaging in transmission electron microscopy, Science 251 (1991) 53-59.
-
(1991)
Science
, vol.251
, pp. 53-59
-
-
Downing, K.H.1
-
21
-
-
0003626435
-
-
Addison-Wesley Publishing Company, Inc., Reading, MA
-
R.C. Gonzalez, R.E. Woods, Digital Image Processing, Addison-Wesley Publishing Company, Inc., Reading, MA, 1993.
-
(1993)
Digital Image Processing
-
-
Gonzalez, R.C.1
Woods, R.E.2
-
22
-
-
0016164145
-
Three-dimensional reconstruction from projections: A review of algorithms
-
R. Gordon, Three-dimensional reconstruction from projections: a review of algorithms, Intern. Rev. Cytol. 38 (1974) 111-151.
-
(1974)
Intern. Rev. Cytol.
, vol.38
, pp. 111-151
-
-
Gordon, R.1
-
24
-
-
0000313739
-
Exact filters for general geometry three dimensional reconstruction
-
G. Harauz, M.B. van Heel, Exact filters for general geometry three dimensional reconstruction, Optik 73 (1986) 146-156.
-
(1986)
Optik
, vol.73
, pp. 146-156
-
-
Harauz, G.1
van Heel, M.B.2
-
25
-
-
20244379996
-
Single-particle electron cryo-microscopy: Towards atomic resolution
-
M. van Heel, B. Growen, R. Matadeen, E. Orlova, R. Finn, T. Pape, D. Cohen, H. Stark, R. Schmidt, M. Schatz, A. Patwardhan, Single-particle electron cryo-microscopy: towards atomic resolution, Quarterly Rev. Biophys. 33 (4) (2000) 307-369.
-
(2000)
Quarterly Rev. Biophys.
, vol.33
, Issue.4
, pp. 307-369
-
-
van Heel, M.1
Growen, B.2
Matadeen, R.3
Orlova, E.4
Finn, R.5
Pape, T.6
Cohen, D.7
Stark, H.8
Schmidt, R.9
Schatz, M.10
Patwardhan, A.11
-
27
-
-
0003602497
-
-
Detection and Processing, Academic Press, New York
-
H.H. Barrett, W. Swindell, Radialogical Imaging: The Theory of Image Formation, Detection and Processing, Academic Press, New York, 1981.
-
(1981)
Radialogical Imaging: The Theory of Image Formation
-
-
Barrett, H.H.1
Swindell, W.2
-
28
-
-
0003084208
-
Orientation determination in the 3D reconstruction of icosahedral viruses using a parallel computer
-
C.A. Johnson, N.I. Weisenfeld, B.L. Trus, J.F. Conway, R.L. Martino, A.C. Steven, Orientation determination in the 3D reconstruction of icosahedral viruses using a parallel computer, J. Mol. Bio., CS & E (1994) 555-559.
-
(1994)
J. Mol. Bio., CS & E
, pp. 555-559
-
-
Johnson, C.A.1
Weisenfeld, N.I.2
Trus, B.L.3
Conway, J.F.4
Martino, R.L.5
Steven, A.C.6
-
29
-
-
0003735899
-
-
IEEE, Inc., IEEE Press, New York
-
A.C. Kak, M. Slaney, Principles of Computerized Tomographic Imaging, IEEE, Inc., IEEE Press, New York, 1988.
-
(1988)
Principles of Computerized Tomographic Imaging
-
-
Kak, A.C.1
Slaney, M.2
-
30
-
-
0003016137
-
Parallel 3D reconstruction of spherical virus particles from digitized images of entire electron micrographs using Cartesian coordinates and Fourier analysis
-
CSD-TR #97-042, Department of Computer Sciences, Purdue University
-
R.E. Lynch, D.C. Marinescu, Parallel 3D reconstruction of spherical virus particles from digitized images of entire electron micrographs using Cartesian coordinates and Fourier analysis, CSD-TR #97-042, Department of Computer Sciences, Purdue University, 1997.
-
(1997)
-
-
Lynch, R.E.1
Marinescu, D.C.2
-
31
-
-
0032656319
-
Parallel algorithms for 3D reconstruction of asymmetric objects from electron micrographs
-
Proceedings of IPPS/SPDP, IEEE Press, New York
-
R.E. Lynch, D.C. Marinescu, H. Lin, T.S. Baker, Parallel algorithms for 3D reconstruction of asymmetric objects from electron micrographs, Proceedings of IPPS/SPDP, IEEE Press, New York, 1999, pp. 632-637.
-
(1999)
, pp. 632-637
-
-
Lynch, R.E.1
Marinescu, D.C.2
Lin, H.3
Baker, T.S.4
-
32
-
-
0003089008
-
An efficient algorithm for parallel 3D reconstruction of asymmetric objects from electron micrographs
-
Proceedings of Euro-Par 2000, Lecture Notes in Computer Science, Vol. 1900, Springer, Berlin
-
R.E. Lynch, H. Lin, D.C. Marinescu, An efficient algorithm for parallel 3D reconstruction of asymmetric objects from electron micrographs, Proceedings of Euro-Par 2000, Lecture Notes in Computer Science, Vol. 1900, Springer, Berlin, pp. 481-490, 2000.
-
(2000)
, pp. 481-490
-
-
Lynch, R.E.1
Lin, H.2
Marinescu, D.C.3
-
33
-
-
0005245441
-
Internet-Based Workflow Management: Towards a Semantic Web
-
ISBN 0-471,43962-2, Wiley, New York
-
D.C. Marinescu, Internet-Based Workflow Management: Towards a Semantic Web, ISBN 0-471,43962-2, Wiley, New York, 2002.
-
(2002)
-
-
Marinescu, D.C.1
-
34
-
-
0012229502
-
Identification of spherical particles in digitized images of entire micrographs
-
I.M. Martin, D.C. Marinescu, T.S. Baker, R.E. Lynch, Identification of spherical particles in digitized images of entire micrographs, J. Struct. Bio. 120 (1997) 146-157.
-
(1997)
J. Struct. Bio.
, vol.120
, pp. 146-157
-
-
Martin, I.M.1
Marinescu, D.C.2
Baker, T.S.3
Lynch, R.E.4
-
35
-
-
0035475275
-
Space-time tradeoffs for parallel 3D reconstruction algorithms for virus structure determination
-
D.C. Marinescu, Y. Ji, R.E. Lynch, Space-time tradeoffs for parallel 3D reconstruction algorithms for virus structure determination, Concurrency Comput.: Practice Experience 13 (2001) 1083-1106.
-
(2001)
Concurrency Comput.: Practice Experience
, vol.13
, pp. 1083-1106
-
-
Marinescu, D.C.1
Ji, Y.2
Lynch, R.E.3
-
36
-
-
0142057955
-
Grid Computing and Applications to Computational Biology
-
Proceedings of the International Symposium on Parallel and Distributed Computing, Analele Stiintifice ale Universitatii Al.I.Cuza, Iasi, ISSN 1224-2268
-
D.C. Marinescu, Y. Ji, G.M. Marinescu, Grid Computing and Applications to Computational Biology, Proceedings of the International Symposium on Parallel and Distributed Computing, Analele Stiintifice ale Universitatii Al.I.Cuza, Iasi, ISSN 1224-2268, Vol. XI, 2002, pp. 11-46.
-
(2002)
, vol.11
, pp. 11-46
-
-
Marinescu, D.C.1
Ji, Y.2
Marinescu, G.M.3
-
37
-
-
0030924992
-
Refinement of macromolecular structures by maximum likelihood method
-
G.N. Murshudov, A.A. Vagin, E.J. Dodson, Refinement of macromolecular structures by maximum likelihood method, Acta Crystallogr. D53 (1997) 240-255.
-
(1997)
Acta Crystallogr.
, vol.D53
, pp. 240-255
-
-
Murshudov, G.N.1
Vagin, A.A.2
Dodson, E.J.3
-
38
-
-
4243400112
-
Improved structures refinement by maximum likelihood
-
N.S. Pannu, R.J. Read, Improved structures refinement by maximum likelihood, Acta Crystallogr. D52 (1997) 659-668.
-
(1997)
Acta Crystallogr.
, vol.D52
, pp. 659-668
-
-
Pannu, N.S.1
Read, R.J.2
-
39
-
-
0001169360
-
Über the Bestimmung von Funktionen durch ihre Integralwerte langs gewisser Manningfaltigkeiten, Berichte über die Verhandlungen der Könieglich Sachsischen Gesellshaft der Wissenschaften zu Leiptzig
-
J. Radon, Über the Bestimmung von Funktionen durch ihre Integralwerte langs gewisser Manningfaltigkeiten, Berichte über die Verhandlungen der Könieglich Sachsischen Gesellshaft der Wissenschaften zu Leiptzig, Math. Phys. Klasse 69 (1917) 262-277.
-
(1917)
Math. Phys. Klasse
, vol.69
, pp. 262-277
-
-
Radon, J.1
-
40
-
-
0015116113
-
Three dimensional reconstructions from radiographs and electron micrographs: Application of convolution instead of Fourier transforms
-
G.N. Ramanchandran, A.V. Lakshminarayanan, Three dimensional reconstructions from radiographs and electron micrographs: application of convolution instead of Fourier transforms, Proc. National Acad. Sciences USA 68 (1971) 2236-2240.
-
(1971)
Proc. National Acad. Sciences USA
, vol.68
, pp. 2236-2240
-
-
Ramanchandran, G.N.1
Lakshminarayanan, A.V.2
-
41
-
-
0003745282
-
Parallel implementation of the filtered back projection algorithms for tomographic imaging
-
R.P.V. Rao, R.D. Kriz, A.L. Abbott, C.J. Ribbens, Parallel implementation of the filtered back projection algorithms for tomographic imaging, http://www.sv.vt.edu/xray_ct/parallel/Parallel_CT.html
-
-
-
Rao, R.P.V.1
Kriz, R.D.2
Abbott, A.L.3
Ribbens, C.J.4
-
42
-
-
0032814584
-
Cryo-electron-microscopy reconstruction of partially symmetric objects
-
M.G. Rossmann, Y. Tao, Cryo-electron-microscopy reconstruction of partially symmetric objects, J. Struct. Biol. 125 (1999) 196-208.
-
(1999)
J. Struct. Biol.
, vol.125
, pp. 196-208
-
-
Rossmann, M.G.1
Tao, Y.2
-
43
-
-
0003023442
-
Structure and assembly of large, lipid-containing, dsDNA viruses
-
X. Yan, N.H. Olson, J.L. Van Etten, M. Bergoin, M.G. Rossmann, T.S. Baker, Structure and assembly of large, lipid-containing, dsDNA viruses, http://expert.cc.purdue.edu/~xdy/research/research.html.
-
-
-
Yan, X.1
Olson, N.H.2
Van Etten, J.L.3
Bergoin, M.4
Rossmann, M.G.5
Baker, T.S.6
|