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Volumn 35, Issue 5, 2003, Pages 495-503

Low levels of endogenous oxidative damage cluster levels in unirradiated viral and human DNAs

Author keywords

Abasic sites; DNA; DNA damage clusters; Endogenous; Freeradicals; Human cells; Oxidized base; Unirradiated

Indexed keywords

BACTERIAL PROTEIN; DNA; PURINE DERIVATIVE; PYRIMIDINE DERIVATIVE; VIRUS DNA;

EID: 0142043465     PISSN: 08915849     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0891-5849(03)00327-7     Document Type: Article
Times cited : (34)

References (45)
  • 1
    • 0030839865 scopus 로고    scopus 로고
    • Oxidative decay of DNA
    • Beckman K.B., Ames B.N. Oxidative decay of DNA. J. Biol. Chem. 272:1998;19633-19636.
    • (1998) J. Biol. Chem , vol.272 , pp. 19633-19636
    • Beckman, K.B.1    Ames, B.N.2
  • 3
    • 0032960559 scopus 로고    scopus 로고
    • Measurement of DNA base damage in cells exposed to low doses of γ-radiation: Comparison between the HPLC-EC and comet assays
    • Pouget J.-P., Ravanat J.-L., Douki T., Richard M.-J., Cadet J. Measurement of DNA base damage in cells exposed to low doses of γ-radiation comparison between the HPLC-EC and comet assays . Int. J. Radiat. Biol. 75:1999;51-58.
    • (1999) Int. J. Radiat. Biol , vol.75 , pp. 51-58
    • Pouget, J.-P.1    Ravanat, J.-L.2    Douki, T.3    Richard, M.-J.4    Cadet, J.5
  • 4
    • 0002080312 scopus 로고    scopus 로고
    • Mechanisms of oxidative DNA damage; Lesions and their measurements
    • M. Dizdaroglu, & K. Karakaya. New York: Plenum
    • Dizdaroglu M. Mechanisms of oxidative DNA damage; lesions and their measurements. Dizdaroglu M., Karakaya K. Advances in DNA damage and repair. 1999;67-87 Plenum, New York.
    • (1999) Advances in DNA damage and repair , pp. 67-87
    • Dizdaroglu, M.1
  • 6
    • 0034242786 scopus 로고    scopus 로고
    • Comparison of the levels of 8-hydroxyguanine in DNA as measured by gas chromatography mass spectrometry following hydrolysis of DNA by Escherichia coli Fpg protein or formic acid
    • Rodriguez H., Jurado J., Laval J., Dizdaroglu M. Comparison of the levels of 8-hydroxyguanine in DNA as measured by gas chromatography mass spectrometry following hydrolysis of DNA by Escherichia coli Fpg protein or formic acid. Nucleic Acids Res. 28:2000;E75.
    • (2000) Nucleic Acids Res. , vol.28 , pp. 75
    • Rodriguez, H.1    Jurado, J.2    Laval, J.3    Dizdaroglu, M.4
  • 7
    • 0031431666 scopus 로고    scopus 로고
    • Problems in the measurement of 8-oxoguanine in human DNA. Report of a workshop, DNA oxidation, held in Aberdeen, UK, 19-21 January, 1997
    • Collins A., Cadet J., Epe B., Gedik C. Problems in the measurement of 8-oxoguanine in human DNA. Report of a workshop, DNA oxidation, held in Aberdeen, UK, 19-21 January, 1997. Carcinogenesis. 18:1997;1833-1836.
    • (1997) Carcinogenesis , vol.18 , pp. 1833-1836
    • Collins, A.1    Cadet, J.2    Epe, B.3    Gedik, C.4
  • 8
    • 0029061765 scopus 로고
    • The action of Escherichia coli Endonuclease III on multiply damaged sites in DNA
    • Chaudhry M.A., Weinfeld M. The action of Escherichia coli Endonuclease III on multiply damaged sites in DNA. J. Mol. Biol. 249:1995;914-922.
    • (1995) J. Mol. Biol , vol.249 , pp. 914-922
    • Chaudhry, M.A.1    Weinfeld, M.2
  • 9
    • 0027973491 scopus 로고
    • The complexity of DNA damage: Relevance to biological consequences
    • Ward J.F. The complexity of DNA damage relevance to biological consequences . Int. J. Radiat. Biol. 66:1994;427-432.
    • (1994) Int. J. Radiat. Biol , vol.66 , pp. 427-432
    • Ward, J.F.1
  • 10
    • 0029318917 scopus 로고
    • Radiation mutagenesis: The initial DNA lesions responsible
    • Ward J.F. Radiation mutagenesis the initial DNA lesions responsible . Radiat. Res. 142:1995;362-368.
    • (1995) Radiat. Res , vol.142 , pp. 362-368
    • Ward, J.F.1
  • 11
    • 0027976408 scopus 로고
    • Initial events in the cellular effects of ionizing radiations: Clustered damage in DNA
    • Goodhead D.T. Initial events in the cellular effects of ionizing radiations clustered damage in DNA . Int. J. Radiat. Biol. 65:1994;7-17.
    • (1994) Int. J. Radiat. Biol , vol.65 , pp. 7-17
    • Goodhead, D.T.1
  • 12
    • 0034602643 scopus 로고    scopus 로고
    • DNA damage clusters induced by ionizing radiation in isolated DNA and in human cells
    • Sutherland B.M., Bennett P.V., Sidorkina O., Laval J. DNA damage clusters induced by ionizing radiation in isolated DNA and in human cells. Proc. Natl. Acad. Sci. USA. 97:2000;103-108.
    • (2000) Proc. Natl. Acad. Sci. USA , vol.97 , pp. 103-108
    • Sutherland, B.M.1    Bennett, P.V.2    Sidorkina, O.3    Laval, J.4
  • 14
    • 0036682280 scopus 로고    scopus 로고
    • Clustered DNA damage induced by gamma radiation in human fibroblasts (HF19), hamster (V79-4) cells and plasmid DNA is revealed as Fpg and Nth sensitive sites
    • Gulston M., Fulford J., Jenner T., de Lara C., O'Neill P. Clustered DNA damage induced by gamma radiation in human fibroblasts (HF19), hamster (V79-4) cells and plasmid DNA is revealed as Fpg and Nth sensitive sites. Nucleic Acids Res. 30:2002;3464-3472.
    • (2002) Nucleic Acids Res , vol.30 , pp. 3464-3472
    • Gulston, M.1    Fulford, J.2    Jenner, T.3    De Lara, C.4    O'Neill, P.5
  • 15
    • 0034636776 scopus 로고    scopus 로고
    • Clustered damages and total lesions induced in DNA by ionizing radiation: Oxidized bases and strand breaks
    • Sutherland B.M., Bennett P.V., Sidorkina O., Laval J. Clustered damages and total lesions induced in DNA by ionizing radiation oxidized bases and strand breaks . Biochemistry. 39:2000;8026-8031.
    • (2000) Biochemistry , vol.39 , pp. 8026-8031
    • Sutherland, B.M.1    Bennett, P.V.2    Sidorkina, O.3    Laval, J.4
  • 16
    • 0023018781 scopus 로고
    • Quantitation of radiation-, chemical-, or enzyme-induced single-strand breaks in nonradioactive DNA by alkaline gel electrophoresis: Application to pyrimidine dimers
    • Freeman S.E., Blackett A.D., Monteleone D.C., Setlow R.B., Sutherland B.M., Sutherland J.C. Quantitation of radiation-, chemical-, or enzyme-induced single-strand breaks in nonradioactive DNA by alkaline gel electrophoresis application to pyrimidine dimers . Anal. Biochem. 158:1986;119-129.
    • (1986) Anal. Biochem , vol.158 , pp. 119-129
    • Freeman, S.E.1    Blackett, A.D.2    Monteleone, D.C.3    Setlow, R.B.4    Sutherland, B.M.5    Sutherland, J.C.6
  • 17
    • 0023355323 scopus 로고
    • Electronic imaging system for direct and rapid quantitation of fluorescence from electrophoretic gels: Application to ethidium bromide-stained DNA
    • Sutherland J.C., Lin B., Monteleone D.C., Mugavero J., Sutherland B.M., Trunk J. Electronic imaging system for direct and rapid quantitation of fluorescence from electrophoretic gels application to ethidium bromide-stained DNA . Anal. Biochem. 163:1987;446-457.
    • (1987) Anal. Biochem , vol.163 , pp. 446-457
    • Sutherland, J.C.1    Lin, B.2    Monteleone, D.C.3    Mugavero, J.4    Sutherland, B.M.5    Trunk, J.6
  • 18
    • 0024393445 scopus 로고
    • Purification and characterization of Escherichia coli endonuclease III from the cloned nth gene
    • Asahara H., Wistort P.M., Bank J.F., Bakerian R.H., Cunningham R.P. Purification and characterization of Escherichia coli endonuclease III from the cloned nth gene. Biochemistry. 28:1989;4444-4449.
    • (1989) Biochemistry , vol.28 , pp. 4444-4449
    • Asahara, H.1    Wistort, P.M.2    Bank, J.F.3    Bakerian, R.H.4    Cunningham, R.P.5
  • 19
    • 0027366974 scopus 로고
    • Substrate specificity of the E. coli endonuclease III: Excision of thymine and cytosine-derived lesions in DNA produced by radiation-generated free radicals
    • Dizdaroglu M., Laval J., Boiteux S. Substrate specificity of the E. coli endonuclease III excision of thymine and cytosine-derived lesions in DNA produced by radiation-generated free radicals . Biochemistry. 32:1993;12105-12111.
    • (1993) Biochemistry , vol.32 , pp. 12105-12111
    • Dizdaroglu, M.1    Laval, J.2    Boiteux, S.3
  • 20
    • 0028305721 scopus 로고
    • New substrates for old enzymes. 5-hydroxy-2′-deoxycytidine and 5-hydroxy-2′-deoxyuridine are substrates for Escherichia coli endonuclease III and formamidopyrimidine DNA N-glycosylase, while 5-hydroxy-2′-deoxyuridine is a substrate for uracil DNA N-glycosylase
    • Hatahet A., Kow W.Y., Purmal A.A., Cunningham R.P., Wallace S.S. New substrates for old enzymes. 5-hydroxy-2′-deoxycytidine and 5-hydroxy-2′-deoxyuridine are substrates for Escherichia coli endonuclease III and formamidopyrimidine DNA N-glycosylase, while 5-hydroxy-2′-deoxyuridine is a substrate for uracil DNA N-glycosylase. J. Biol. Chem. 269:1994;18814-18820.
    • (1994) J. Biol. Chem , vol.269 , pp. 18814-18820
    • Hatahet, A.1    Kow, W.Y.2    Purmal, A.A.3    Cunningham, R.P.4    Wallace, S.S.5
  • 21
    • 0032568654 scopus 로고    scopus 로고
    • The ring fragmentation product of thymidine C5-hydrate when present in DNA is repaired by the Escherichia coli Fpg and Nth proteins
    • Jurado J., Saparbaev M., Matray T.J., Greenberg M.M., Laval J. The ring fragmentation product of thymidine C5-hydrate when present in DNA is repaired by the Escherichia coli Fpg and Nth proteins. Biochemistry. 37:1998;7757-7763.
    • (1998) Biochemistry , vol.37 , pp. 7757-7763
    • Jurado, J.1    Saparbaev, M.2    Matray, T.J.3    Greenberg, M.M.4    Laval, J.5
  • 22
    • 0025240665 scopus 로고
    • Homogeneous Escherichia coli FPG Protein. A DNA glycosylase which excises imidazole ring-opened purines and nicks DNA at apurinic/apyrimidinic sites
    • Boiteux S., O'Conner T.R., Lederer F., Gouvette A., Laval J. Homogeneous Escherichia coli FPG Protein. A DNA glycosylase which excises imidazole ring-opened purines and nicks DNA at apurinic/apyrimidinic sites. J. Biol. Chem. 265:1990;3916-3922.
    • (1990) J. Biol. Chem , vol.265 , pp. 3916-3922
    • Boiteux, S.1    O'Conner, T.R.2    Lederer, F.3    Gouvette, A.4    Laval, J.5
  • 23
    • 0026533905 scopus 로고
    • Substrate specificity of the Escherichia coli Fpg protein (formamidopyrimidine-DNA glycosylase): Excision of purine lesions in DNA produced by ionizing radiation or photosensitization
    • Boiteux S., Gajewski E., Laval J., Dizdaroglu M. Substrate specificity of the Escherichia coli Fpg protein (formamidopyrimidine-DNA glycosylase) excision of purine lesions in DNA produced by ionizing radiation or photosensitization . Biochemistry. 31:1992;106-110.
    • (1992) Biochemistry , vol.31 , pp. 106-110
    • Boiteux, S.1    Gajewski, E.2    Laval, J.3    Dizdaroglu, M.4
  • 25
  • 26
    • 0038939282 scopus 로고    scopus 로고
    • Substrate specificity of Deinococcus radiodurans Fpg protein
    • Senturker S., Bauche C., Laval J., Dizdaroglu M. Substrate specificity of Deinococcus radiodurans Fpg protein. Biochemistry. 38:1999;9435-9439.
    • (1999) Biochemistry , vol.38 , pp. 9435-9439
    • Senturker, S.1    Bauche, C.2    Laval, J.3    Dizdaroglu, M.4
  • 27
    • 0019285806 scopus 로고
    • Comparison of the cleavage of pyrimidine dimers by the bacteriophage T4 and Micrococcus luteus UV-specific endonucleases
    • Gordon L.K., Haseltine W.A. Comparison of the cleavage of pyrimidine dimers by the bacteriophage T4 and Micrococcus luteus UV-specific endonucleases. J. Biol. Chem. 255:1980;12050-12407.
    • (1980) J. Biol. Chem , vol.255 , pp. 12050-12407
    • Gordon, L.K.1    Haseltine, W.A.2
  • 28
    • 0030069384 scopus 로고    scopus 로고
    • A novel DNA N-glycosylase activity of E. coli T4 endonuclease V that excises 4,6-diamino-5-formamidopyrimidine from DNA, a UV-radiation and hydroxyl radical-induced product of adenine
    • Dizdaroglu M., Zastawny T.H., Carmical J.R., Lloyd R.S. A novel DNA N-glycosylase activity of E. coli T4 endonuclease V that excises 4,6-diamino-5-formamidopyrimidine from DNA, a UV-radiation and hydroxyl radical-induced product of adenine. Mutat. Res. 362:1996;1-8.
    • (1996) Mutat. Res , vol.362 , pp. 1-8
    • Dizdaroglu, M.1    Zastawny, T.H.2    Carmical, J.R.3    Lloyd, R.S.4
  • 31
    • 0017701231 scopus 로고
    • A new endonuclease from Escherichia coli acting at apurinic sites in DNA
    • Ljungquist S. A new endonuclease from Escherichia coli acting at apurinic sites in DNA. J. Biol. Chem. 252:1977;2808-2814.
    • (1977) J. Biol. Chem , vol.252 , pp. 2808-2814
    • Ljungquist, S.1
  • 32
    • 0023917460 scopus 로고
    • Homogeneous Escherichia coli endonuclease IV. Characterization of an enzyme that recognizes oxidative damage in DNA
    • Levin J.D., Johnson A.W., Demple B. Homogeneous Escherichia coli endonuclease IV. Characterization of an enzyme that recognizes oxidative damage in DNA. J. Biol. Chem. 263:1988;8066-8071.
    • (1988) J. Biol. Chem , vol.263 , pp. 8066-8071
    • Levin, J.D.1    Johnson, A.W.2    Demple, B.3
  • 33
    • 0028144992 scopus 로고
    • Interactions of Escherichia coli endonuclease IV and exonuclease III with abasic sites in DNA
    • Takeuchi M., Demple B., Takeshita M. Interactions of Escherichia coli endonuclease IV and exonuclease III with abasic sites in DNA. J. Biol. Chem. 26:1994;21907-21914.
    • (1994) J. Biol. Chem , vol.26 , pp. 21907-21914
    • Takeuchi, M.1    Demple, B.2    Takeshita, M.3
  • 34
    • 0028181135 scopus 로고
    • α-Deoxyadenosine, a major anoxic radiolysis product of adenine in DNA, is a substrate for Escherichia coli endonuclease IV
    • Ide H., Tedzuka K., Shimzu H., Kumura Y., Purmal A.A., Wallace S.S., Kow Y.W. α-Deoxyadenosine, a major anoxic radiolysis product of adenine in DNA, is a substrate for Escherichia coli endonuclease IV. Biochemistry. 33:1994;7842-7847.
    • (1994) Biochemistry , vol.33 , pp. 7842-7847
    • Ide, H.1    Tedzuka, K.2    Shimzu, H.3    Kumura, Y.4    Purmal, A.A.5    Wallace, S.S.6    Kow, Y.W.7
  • 35
    • 0037049975 scopus 로고    scopus 로고
    • Alternative nucleotide incision repair pathway for oxidative DNA damage
    • Ischenko A.A., Saparbaev M.K. Alternative nucleotide incision repair pathway for oxidative DNA damage. Nature. 415:2002;183-187.
    • (2002) Nature , vol.415 , pp. 183-187
    • Ischenko, A.A.1    Saparbaev, M.K.2
  • 36
    • 0035833982 scopus 로고    scopus 로고
    • Substrate specificity and excision kinetics of Escherichia coli endonuclease VIII (Nei) for modified bases in DNA damaged by free radicals
    • Dizdaroglu M., Burgess S.M., Jaruga P., Hazra T.K., Rodriguez H., Lloyd R.S. Substrate specificity and excision kinetics of Escherichia coli endonuclease VIII (Nei) for modified bases in DNA damaged by free radicals. Biochemistry. 40:2001;12150-12156.
    • (2001) Biochemistry , vol.40 , pp. 12150-12156
    • Dizdaroglu, M.1    Burgess, S.M.2    Jaruga, P.3    Hazra, T.K.4    Rodriguez, H.5    Lloyd, R.S.6
  • 37
    • 0023193618 scopus 로고
    • Unidirectional pulsed-field electrophoresis of single- and double-stranded DNA in agarose gels: Analytical expression relating mobility and molecular length and their application in the measurement of strand breaks
    • Sutherland J.C., Monteleone D.C., Mugavero J.H., Trunk J. Unidirectional pulsed-field electrophoresis of single- and double-stranded DNA in agarose gels analytical expression relating mobility and molecular length and their application in the measurement of strand breaks . Anal. Biochem. 162:1987;511-520.
    • (1987) Anal. Biochem , vol.162 , pp. 511-520
    • Sutherland, J.C.1    Monteleone, D.C.2    Mugavero, J.H.3    Trunk, J.4
  • 38
    • 0017236898 scopus 로고
    • Effect of room fluorescent light on the deterioration of tissue culture medium
    • Wang R.J. Effect of room fluorescent light on the deterioration of tissue culture medium. In Vitro. 12:1976;19-22.
    • (1976) In Vitro , vol.12 , pp. 19-22
    • Wang, R.J.1
  • 39
    • 0015417932 scopus 로고
    • Toxicity of irradiated medium for repair-deficient strains of Escherichia coli
    • Webb R.B., Lorenz J.R. Toxicity of irradiated medium for repair-deficient strains of Escherichia coli. J. Bacteriol. 112:1972;649-652.
    • (1972) J. Bacteriol , vol.112 , pp. 649-652
    • Webb, R.B.1    Lorenz, J.R.2
  • 40
    • 0022577807 scopus 로고
    • Fractionation of large mammalian DNA restriction fragments using vertical pulsed-field gradient gel electrophoresis
    • Gardiner K., Laas W., Patterson D. Fractionation of large mammalian DNA restriction fragments using vertical pulsed-field gradient gel electrophoresis. Somat. Cell Mol. Genet. 12:1986;185-195.
    • (1986) Somat. Cell Mol. Genet , vol.12 , pp. 185-195
    • Gardiner, K.1    Laas, W.2    Patterson, D.3
  • 41
    • 0030586296 scopus 로고    scopus 로고
    • Double strand breaks induced by low doses of gamma rays or heavy ions: Quantitation in non-radioactive human DNA
    • Sutherland B.M., Bennett P.V., Sutherland J.C. Double strand breaks induced by low doses of gamma rays or heavy ions quantitation in non-radioactive human DNA . Anal. Biochem. 239:1996;53-60.
    • (1996) Anal. Biochem , vol.239 , pp. 53-60
    • Sutherland, B.M.1    Bennett, P.V.2    Sutherland, J.C.3
  • 42
    • 0035064055 scopus 로고    scopus 로고
    • Quantifying DNA damage by gel electrophoresis, electronic imaging and number average length analysis
    • Sutherland J.C., Monteleone D.C., Trunk J.G., Bennett P.V., Sutherland B.M. Quantifying DNA damage by gel electrophoresis, electronic imaging and number average length analysis. Electrophoresis. 22:2001;843-854.
    • (2001) Electrophoresis , vol.22 , pp. 843-854
    • Sutherland, J.C.1    Monteleone, D.C.2    Trunk, J.G.3    Bennett, P.V.4    Sutherland, B.M.5
  • 43
    • 0037465766 scopus 로고    scopus 로고
    • Evaluation of number average length analysis in quantifying double strand breaks in genomic DNAs
    • Sutherland B.M., Bennett P.V., Georgakilas A.G., Sutherland J.C. Evaluation of number average length analysis in quantifying double strand breaks in genomic DNAs. Biochemistry. 42:2003;3375-3384.
    • (2003) Biochemistry , vol.42 , pp. 3375-3384
    • Sutherland, B.M.1    Bennett, P.V.2    Georgakilas, A.G.3    Sutherland, J.C.4
  • 44
    • 0035173581 scopus 로고    scopus 로고
    • Frequencies and relative levels of clustered damages in DNA exposed to gamma rays in radioquenching vs. nonradioquenching conditions
    • Sutherland B.M., Bennett P.V., Weinert E., Sidorkina O., Laval J. Frequencies and relative levels of clustered damages in DNA exposed to gamma rays in radioquenching vs. nonradioquenching conditions. Environ. Mol. Mutagen. 38:2001;159-165.
    • (2001) Environ. Mol. Mutagen , vol.38 , pp. 159-165
    • Sutherland, B.M.1    Bennett, P.V.2    Weinert, E.3    Sidorkina, O.4    Laval, J.5
  • 45
    • 17744417519 scopus 로고    scopus 로고
    • Cellular background level of 8-oxo-7,8-dihydro-2′-deoxyguanosine: An isotope based method to evaluate artefactual oxidation of DNA during its extraction and subsequent work-up
    • Ravanat J.L., Douki T., Duez P., Gremaud E., Herbert K., Hofer T., Lasserre L., Saint-Pierre C., Favier A., Cadet J. Cellular background level of 8-oxo-7,8-dihydro-2′-deoxyguanosine an isotope based method to evaluate artefactual oxidation of DNA during its extraction and subsequent work-up . Carcinogenesis. 23:2002;1911-1918.
    • (2002) Carcinogenesis , vol.23 , pp. 1911-1918
    • Ravanat, J.L.1    Douki, T.2    Duez, P.3    Gremaud, E.4    Herbert, K.5    Hofer, T.6    Lasserre, L.7    Saint-Pierre, C.8    Favier, A.9    Cadet, J.10


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