메뉴 건너뛰기




Volumn 33, Issue 5, 2003, Pages 802-813

Knowledge discovery in medical and biological datasets using a hybrid bayes classifier/evolutionary algorithm

Author keywords

Bioinformatics; Evolutionary computing; Genetic algorithms; Pattern recognition

Indexed keywords

DATA MINING; DATA STRUCTURES; EVOLUTIONARY ALGORITHMS; FEATURE EXTRACTION; MEDICAL IMAGING; PATTERN RECOGNITION; STATISTICAL METHODS; X RAY CRYSTALLOGRAPHY;

EID: 0142009655     PISSN: 10834419     EISSN: None     Source Type: Journal    
DOI: 10.1109/TSMCB.2003.816922     Document Type: Article
Times cited : (85)

References (52)
  • 1
    • 0031592453 scopus 로고    scopus 로고
    • Predicting conserved water-mediated and polar ligand interactions in proteins using a k-nearest-neighbors genetic algorithm
    • M.L. Raymer, P. C. Sanschagrin, W. F. Punch, S. Venkataraman, E. D. Goodman, and L. A. Kuhn, "Predicting conserved water-mediated and polar ligand interactions in proteins using a k-nearest-neighbors genetic algorithm," J. Mol. Biol., vol. 265, pp. 445-464, 1997.
    • (1997) J. Mol. Biol. , vol.265 , pp. 445-464
    • Raymer, M.L.1    Sanschagrin, P.C.2    Punch, W.F.3    Venkataraman, S.4    Goodman, E.D.5    Kuhn, L.A.6
  • 4
    • 0029450365 scopus 로고
    • Hydration in drug design. 1. Multiple hydrogen-bonding features of water molecules in mediating protein ligand interactions
    • C. S. Poornima and P. M. Dean, "Hydration in drug design. 1. Multiple hydrogen-bonding features of water molecules in mediating protein ligand interactions," J. Comput. Aided Mol. Design, vol. 9, pp. 500-512, 1995.
    • (1995) J. Comput. Aided Mol. Design , vol.9 , pp. 500-512
    • Poornima, C.S.1    Dean, P.M.2
  • 5
    • 0026498010 scopus 로고
    • The interdependence of protein surface topography and bound water molecules revealed by surface accessibility and fractal density measures
    • L. A. Kuhn, M. A. Siani, M. F. Pique, C. L. Fisher, E. D. Getzoff, and J. A. Tainer, "The interdependence of protein surface topography and bound water molecules revealed by surface accessibility and fractal density measures," J. Mol. Biol, vol. 228, pp. 13-22, 1992.
    • (1992) J. Mol. Biol , vol.228 , pp. 13-22
    • Kuhn, L.A.1    Siani, M.A.2    Pique, M.F.3    Fisher, C.L.4    Getzoff, E.D.5    Tainer, J.A.6
  • 6
    • 0029444719 scopus 로고
    • Hydration in drug design. 2. Influence of local site surface shape on water binding
    • C. S. Poornima and P. M. Dean, "Hydration in drug design. 2. Influence of local site surface shape on water binding," J. Comput. Aided Mol. Design, vol. 9, pp. 513-520, 1995.
    • (1995) J. Comput. Aided Mol. Design , vol.9 , pp. 513-520
    • Poornima, C.S.1    Dean, P.M.2
  • 7
    • 0021192240 scopus 로고
    • Hydrogen bonding in globular proteins
    • E. N. Baker and R. E. Hubbard, "Hydrogen bonding in globular proteins," Prog. Biophys. Mol. Biol, vol. 44, pp. 97-179, 1984.
    • (1984) Prog. Biophys. Mol. Biol , vol.44 , pp. 97-179
    • Baker, E.N.1    Hubbard, R.E.2
  • 8
    • 0001185873 scopus 로고
    • An essay toward solving a problem in the doctrine of chances
    • T. Bayes, "An essay toward solving a problem in the doctrine of chances," Phil. Trans. Roy. Soc., vol. 53, 1763.
    • (1763) Phil. Trans. Roy. Soc. , vol.53
    • Bayes, T.1
  • 10
    • 0002419948 scopus 로고    scopus 로고
    • Beyond independence: Conditions for the optimality of the simple bayesian classifier
    • L. Saitta, Ed., San Francisco, CA
    • P. Domingos and A. Pazzani, "Beyond independence: Conditions for the optimality of the simple bayesian classifier," in Proc. 13th Int. Conf. Machine Learning, L. Saitta, Ed., San Francisco, CA, 1996, pp. 105-112.
    • (1996) Proc. 13th Int. Conf. Machine Learning , pp. 105-112
    • Domingos, P.1    Pazzani, A.2
  • 12
    • 63249112814 scopus 로고
    • Dimensionality and sample size considerations in pattern recognition in practice
    • P. R. Krishnaiah and L. N. Kanal, Eds. North-Holland, The Netherlands
    • A. K. Jain and B. Chandrasekaran, "Dimensionality and sample size considerations in pattern recognition in practice," in Handbook Statistics, P. R. Krishnaiah and L. N. Kanal, Eds. North-Holland, The Netherlands, 1982, vol. 2, pp. 835-855.
    • (1982) Handbook Statistics , vol.2 , pp. 835-855
    • Jain, A.K.1    Chandrasekaran, B.2
  • 13
    • 0018491795 scopus 로고
    • A problem of dimensionality: A simple example
    • G. V. Trunk, "A problem of dimensionality: A simple example," IEEE Trans. Pattern Anal. Machine Intell., vol. PAMI-1, pp. 306-307, 1979.
    • (1979) IEEE Trans. Pattern Anal. Machine Intell. , vol.PAMI-1 , pp. 306-307
    • Trunk, G.V.1
  • 14
    • 0017368046 scopus 로고
    • On the possible orderings in the measurement selection problem
    • T. M. Cover and J. M. V. Campenhout, "On the possible orderings in the measurement selection problem," IEEE Trans. Syst., Man, Cybern., vol. SMC-7, pp. 657-661, 1977.
    • (1977) IEEE Trans. Syst., Man, Cybern. , vol.SMC-7 , pp. 657-661
    • Cover, T.M.1    Campenhout, J.M.V.2
  • 15
    • 0017535866 scopus 로고
    • A branch and bound algorithm for feature subset selection
    • P. M. Narendra and K. Fukunaga, "A branch and bound algorithm for feature subset selection," IEEE Trans. Comput., vol. C-26, pp. 917-922, 1977.
    • (1977) IEEE Trans. Comput. , vol.C-26 , pp. 917-922
    • Narendra, P.M.1    Fukunaga, K.2
  • 16
    • 0015125457 scopus 로고
    • A direct method of nonparametric measurement selection
    • A. Whitney, "A direct method of nonparametric measurement selection," IEEE Trans. Comput., vol. C-20, pp. 1100-1103, 1971.
    • (1971) IEEE Trans. Comput. , vol.C-20 , pp. 1100-1103
    • Whitney, A.1
  • 17
    • 0028547556 scopus 로고
    • Floating search methods in feature selection
    • Nov.
    • P. Pudil, J. Novovicova, and J. Kittler, "Floating search methods in feature selection," Pattern Recognit. Lett., vol. 15, pp. 1119-1125, Nov. 1994.
    • (1994) Pattern Recognit. Lett. , vol.15 , pp. 1119-1125
    • Pudil, P.1    Novovicova, J.2    Kittler, J.3
  • 18
    • 0031078007 scopus 로고    scopus 로고
    • Feature selection: Evaluation, application, and small sample performance
    • Feb.
    • A. K. Jain and D. Zongker, "Feature selection: Evaluation, application, and small sample performance," IEEE Trans. Pattern Anal. Machine Intell., vol. 19, pp. 153-158, Feb. 1997.
    • (1997) IEEE Trans. Pattern Anal. Machine Intell. , vol.19 , pp. 153-158
    • Jain, A.K.1    Zongker, D.2
  • 20
    • 0030214780 scopus 로고    scopus 로고
    • Adaptive fuzzy rule-based classification systems
    • Aug.
    • K. Nozaki, H. Ishibuchi, and H. Tanaka, "Adaptive fuzzy rule-based classification systems," IEEE Trans. Fuzzy Syst., vol. 4, pp. 238-250, Aug. 1996.
    • (1996) IEEE Trans. Fuzzy Syst. , vol.4 , pp. 238-250
    • Nozaki, K.1    Ishibuchi, H.2    Tanaka, H.3
  • 21
    • 0029359001 scopus 로고
    • Selecting fuzzy if-then rules for classification problems using genetic algorithms
    • Aug.
    • H. Ishibuchi, K. Nozaki, N. Yamamoto, and H. Tanaka, "Selecting fuzzy if-then rules for classification problems using genetic algorithms," IEEE Trans. Fuzzy Syst., vol. 3, pp. 260-270, Aug. 1995.
    • (1995) IEEE Trans. Fuzzy Syst. , vol.3 , pp. 260-270
    • Ishibuchi, H.1    Nozaki, K.2    Yamamoto, N.3    Tanaka, H.4
  • 22
    • 33744584654 scopus 로고
    • Induction of decision trees
    • J. R. Quinlan, "Induction of decision trees," Mach. Learn., vol. 1, pp. 81-106, 1986.
    • (1986) Mach. Learn. , vol.1 , pp. 81-106
    • Quinlan, J.R.1
  • 24
    • 0024895461 scopus 로고
    • A note on genetic algorithms for large-scale feature selection
    • W. Siedlecki and J. Sklansky, "A note on genetic algorithms for large-scale feature selection," Pattern Recognit. Lett., vol. 10, pp. 335-347, 1989.
    • (1989) Pattern Recognit. Lett. , vol.10 , pp. 335-347
    • Siedlecki, W.1    Sklansky, J.2
  • 25
    • 84926662675 scopus 로고
    • Nearest neighbor pattern classification
    • Jan.
    • T. M. Cover and P. F. Hart, "Nearest neighbor pattern classification," IEEE Trans. Inform. Theory, vol. IT-13, pp. 21-27, Jan., 1967.
    • (1967) IEEE Trans. Inform. Theory , vol.IT-13 , pp. 21-27
    • Cover, T.M.1    Hart, P.F.2
  • 31
    • 0001182408 scopus 로고
    • The effect of noise on concept learning
    • R. Michalski. J. Carbonnell, and T. Mitchell, Eds. San Mateo, CA: Morgan Kaufmann
    • J. R. Quinlan, "The effect of noise on concept learning," in Machine Learning: An Artificial Intelligence Approach, R. Michalski. J. Carbonnell, and T. Mitchell, Eds. San Mateo, CA: Morgan Kaufmann, 1986, pp. 149-166.
    • (1986) Machine Learning: An Artificial Intelligence Approach , pp. 149-166
    • Quinlan, J.R.1
  • 32
    • 0016533974 scopus 로고
    • A branch and bound algorithm for computing k-nearest neighbors
    • K. Fukunaga and P. M. Narendra, "A branch and bound algorithm for computing k-nearest neighbors," IEEE Trans. Comput., vol. C-26, pp. 750-753, 1975.
    • (1975) IEEE Trans. Comput. , vol.C-26 , pp. 750-753
    • Fukunaga, K.1    Narendra, P.M.2
  • 33
    • 0141934990 scopus 로고    scopus 로고
    • UCI Repository of Machine Learning Databases. University of California, Irvine, Dept. Inform. Comput. Sci., [Online]
    • C. L. Blake and C. J. Merz. (1998) UCI Repository of Machine Learning Databases. University of California, Irvine, Dept. Inform. Comput. Sci., [Online]. Available:http://www.ics.uci.edu/~mlearn/IMLRepository.html.
    • (1998)
    • Blake, C.L.1    Merz, C.J.2
  • 34
    • 0020748239 scopus 로고
    • Computer-intensive methods in statistics
    • P. Diaconis and B. Efron, "Computer-intensive methods in statistics," in Sci. Amer., 1983, vol. 248.
    • (1983) Sci. Amer. , vol.248
    • Diaconis, P.1    Efron, B.2
  • 35
    • 0001929348 scopus 로고
    • Assistant-86: A knowledge-elicitation tool for sophisticated users
    • I. Bratko and N. Lavrac, Eds., Islamabad, Pakistan: Sigma
    • G. Cestnik, I. Konenenko, and I. Bratko, "Assistant-86: A knowledge-elicitation tool for sophisticated users," in Progress in Machine Learning, I. Bratko and N. Lavrac, Eds., Islamabad, Pakistan: Sigma,1987, pp. 31-45.
    • (1987) Progress in Machine Learning , pp. 31-45
    • Cestnik, G.1    Konenenko, I.2    Bratko, I.3
  • 37
    • 0013228191 scopus 로고
    • The classification performance of RDA
    • Dept. Computer Science Dept. Mathematics Statistics, James Cook University of North Queensland, Tech. Rep. 92-01
    • S. Aeberhard, D. Coomans, and O. de Vel, "The Classification Performance of RDA," Dept. Computer Science Dept. Mathematics Statistics, James Cook University of North Queensland, Tech. Rep. 92-01, 1992.
    • (1992)
    • Aeberhard, S.1    Coomans, D.2    De Vel, O.3
  • 38
    • 0012018345 scopus 로고
    • Comparison of classifiers in high dimensional settings
    • Dept. Comput. Sci., Dept. Math. Stat., James Cook University of North Queensland, Australia, Tech. Rep. 92-02
    • ____, "Comparison of Classifiers in High Dimensional Settings," Dept. Comput. Sci., Dept. Math. Stat., James Cook University of North Queensland, Australia, Tech. Rep. 92-02, 1992.
    • (1992)
    • Aeberhard, S.1    Coomans, D.2    De Vel, O.3
  • 40
    • 0001512820 scopus 로고
    • An empirical comparison of pattern recognition, neural nets, and machine learning classification methods
    • N. S. Sridharan, Ed., Detroit, MI
    • S. Weiss and I. Kapouleas, "An empirical comparison of pattern recognition, neural nets, and machine learning classification methods," in Proc. 11th Int. Joint Conf. Artificial Intelligence, N. S. Sridharan, Ed., Detroit, MI, 1989, pp. 781-787.
    • (1989) Proc. 11th Int. Joint Conf. Artificial Intelligence , pp. 781-787
    • Weiss, S.1    Kapouleas, I.2
  • 43
    • 0020552493 scopus 로고
    • The assessment of laboratory tests in the diagnosis of acute appendicitis
    • A. Marchand, F. V. Lente, and R. Galen, "The assessment of laboratory tests in the diagnosis of acute appendicitis," Amer. J. Clin. Pathol., vol. 80, no. 3, pp. 369-374, 1983.
    • (1983) Amer. J. Clin. Pathol. , vol.80 , Issue.3 , pp. 369-374
    • Marchand, A.1    Lente, F.V.2    Galen, R.3
  • 46
    • 0027092678 scopus 로고
    • Selection of representative protein data sets
    • U. Hobohm, M. Scharf, R. Schneider, and C. Sander, "Selection of representative protein data sets," Protein Sci., vol. 1, pp. 409-417, 1992.
    • (1992) Protein Sci. , vol.1 , pp. 409-417
    • Hobohm, U.1    Scharf, M.2    Schneider, R.3    Sander, C.4
  • 48
    • 0021107965 scopus 로고
    • Solvent-accessible surfaces of proteins and nucleic acids
    • M. L. Connolly, "Solvent-accessible surfaces of proteins and nucleic acids," Science, vol. 221. pp. 709-713, 1983.
    • (1983) Science , vol.221 , pp. 709-713
    • Connolly, M.L.1
  • 49
    • 0027439587 scopus 로고
    • Further developments of hydrogen bond functions for use in determining energetically favorable binding sites on molecules of known structure
    • R. C. Wade, K. J. Clark, and P. J. Goodford, "Further developments of hydrogen bond functions for use in determining energetically favorable binding sites on molecules of known structure," J. Med. Chem., pp. 140-147, 1993.
    • (1993) J. Med. Chem. , vol.36 , pp. 140-147
    • Wade, R.C.1    Clark, K.J.2    Goodford, P.J.3
  • 50
    • 0000166646 scopus 로고
    • AQUARIUS2: Knowledge-based modeling of solvent sites around proteins
    • W. R. Pitt, J. Murray-Rust, and J. M. Goodfellow, "AQUARIUS2: Knowledge-based modeling of solvent sites around proteins," J. Comp. Chem., vol. 14, no. 9, pp. 1007-1018, 1993.
    • (1993) J. Comp. Chem. , vol.14 , Issue.9 , pp. 1007-1018
    • Pitt, W.R.1    Murray-Rust, J.2    Goodfellow, J.M.3
  • 51
    • 0011487604 scopus 로고
    • An algorithm for the systematic solvation of proteins based on the directionality of hydrogen bonds
    • A. Vedani and D. W. Huhta, "An algorithm for the systematic solvation of proteins based on the directionality of hydrogen bonds," J. Am. Chem. Soc., vol. 113, pp. 5860-5862, 1991.
    • (1991) J. Am. Chem. Soc. , vol.113 , pp. 5860-5862
    • Vedani, A.1    Huhta, D.W.2
  • 52
    • 0141934988 scopus 로고    scopus 로고
    • Identifying the determinants of favorable solvation sites
    • submitted for publication
    • M. L. Raymer, D. Holstius, and L. A. Kuhn, "Identifying the determinants of favorable solvation sites," Protein Eng.,., 2001, submitted for publication.
    • (2001) Protein Eng.
    • Raymer, M.L.1    Holstius, D.2    Kuhn, L.A.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.