Promoter analysis of the human translation termination factor 1 gene

Gene

Volumn 316, Issue 1-2, 2003, Pages 91-101

  Dubourg, Christèle ^a   Toutain, Bertrand ^a   Le Gall, Jean Yves ^a   Le Treut, André ^a   Guenet, Lucienne ^a  

^a UNIVERSITÉ DE RENNES 1   (France)

Author keywords

Gene expression; Sp1 Sp3; TATA less; Transcription regulation

Indexed keywords

DEOXYRIBONUCLEASE I; ISOPROTEIN; NUCLEOTIDE; RIBONUCLEASE; TRANSLATION TERMINATION FACTOR;

ANIMAL CELL; ANIMAL TISSUE; ARTICLE; BINDING SITE; DNA FOOTPRINTING; DOWNSTREAM PROCESSING; FEMALE; GENE CLUSTER; GENE EXPRESSION; GENE MAPPING; GENETIC TRANSCRIPTION; HUMAN; HUMAN CELL; IN VITRO STUDY; IN VIVO STUDY; MOUSE; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROMOTER REGION; PROTEIN EXPRESSION; QUANTITATIVE ANALYSIS; REGULATORY MECHANISM; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; RNA TRANSLATION; TATA BOX; TRANSCRIPTION INITIATION SITE; UPREGULATION;

EID: 0141922187     PISSN: 03781119     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0378-1119(03)00742-X     Document Type: Article

References (30)

1. Bertram G., Bell H.A., Ritchie D.W., Fullerton G., Stansfield I. Terminating eukaryote translation: domain 1 of release factor eRF1 functions in stop codon recognition. RNA. 6:2000;1236-1247.
2. Burke T.W., Kadonaga J.T. Drosophila TFIID binds to a conserved downstream basal promoter element that is present in many TATA-box-deficient promoters. Genes Dev. 10:1996;711-724.
3. Chauvel B., Dorval I., Fergelot P., Pichon L., Giffon T., Gicquel I., Le Gall J.Y., David V. A human homologue to the yeast omnipotent suppressor 45 maps 100 kb centromeric to HLA-A. Immunogenetics. 41:1995;380-382.
4. Dignam J.D., Lebovitz R.M., Roeder R.G. Accurate transcription initiation by RNA polymerase II in a soluble extract from isolated mammalian nuclei. Nucleic Acids Res. 11:1983;1475-1489.
5. Dirks R.P., Jansen H.J., Gerritsma J., Onnekink C., Bloemers H.P. Localization and functional analysis of DNase-I-hypersensitive sites in the human c-sis/PDGF-B gene transcription unit and its flanking regions. Eur. J. Biochem. 211:1993;509-519.
6. Faniello M.C., Bevilacqua M.A., Condorelli G., de Crombrugghe B., Maity S.N., Avvedimento V.E., Cimino F., Costanzo F. The B subunit of the CAAT-binding factor NFY binds the central segment of the Co-activator p300. J. Biol. Chem. 274:1999;7623-7626.
7. Frolova L., Le Goff X., Rasmussen H.H., Cheperegin S., Drugeon G., Kress M., Arman I., Haenni A.L., Celis J.E., Philippe M., Justesen J., Kisselev L. A highly conserved eukaryotic protein family possessing properties of polypeptide chain release factor [see comments]. Nature. 372:1994;701-703.
8. Frolova L., Le Goff X., Zhouravleva G., Davydova E., Philippe M., Kisselev L. Eukaryotic polypeptide chain release factor eRF3 is an eRF1- and ribosome-dependent guanosine triphosphatase. RNA. 2:1996;334-341.
9. Frolova L.Y., Merkulova T.I., Kisselev L.L. Translation termination in eukaryotes: polypeptide release factor eRF1 is composed of functionally and structurally distinct domains. RNA. 6:2000;381-390.
10. Garrity P.A., Wold B.J. Effects of different DNA polymerases in ligation-mediated PCR: enhanced genomic sequencing and in vivo footprinting. Proc. Natl. Acad. Sci. U. S. A. 89:1992;1021-1025.
11. Grenett H.E., Eipers P.G., Kidd V.J., Bounelis P., Fuller G.M. Chromosomal localization of a human cDNA containing a DIDS binding domain and demonstrating high homology to yeast omnipotent suppressor 45. Somat. Cell Mol. Genet. 18:1992;97-102.
12. Guenet L., Toutain B., Guilleret I., Chauvel B., Deaven L.L., Longmire J.L., Le Gall J.Y., David V., Le Treut A. Human release factor eRF1: structural organisation of the unique functional gene on chromosome 5 and of the three processed pseudogenes. FEBS Lett. 454:1999;131-136.
13. Guenet L., Henry C., Toutain B., Dubourg C., Le Gall J.Y., David V., Le Treut A. Eukaryotic translation termination factor gene (ETF1/eRF1) maps at D5S500 in a commonly deleted region of chromosome 5q31 in malignant myeloid diseases. Cytogenet. Cell Genet. 88:2000;82-86.
14. Heinemeyer T., Wingender E., Reuter I., Hermjakob H., Kel A.E., Kel O.V., Ignatieva E.V., Ananko E.A., Podkolodnaya O.A., Kolpakov F.A., Podkolodny N.L., Kolchanov N.A. Databases on transcriptional regulation: TRANSFAC, TRRD and COMPEL. Nucleic Acids Res. 26:1998;362-367.
15. Inagaki Y., Blouin C., Doolittle W.F., Roger A.J. Convergence and constraint in eukaryotic release factor 1 (eRF1) domain 1: the evolution of stop codon specificity. Nucleic Acids Res. 30:2002;532-544.
16. Konecki D.S., Aune K.C., Tate W., Caskey C.T. Characterization of reticulocyte release factor. J. Biol. Chem. 252:1977;4514-4520.
17. Merkulova T.I., Frolova L.Y., Lazar M., Camonis J., Kisselev L.L. C-terminal domains of human translation termination factors eRF1 and eRF3 mediate their in vivo interaction. FEBS Lett. 443:1999;41-47.
18. Muramatsu T., Heckmann K., Kitanaka C., Kuchino Y. Molecular mechanism of stop codon recognition by eRF1: a wobble hypothesis for peptide anticodons. FEBS Lett. 488:2001;105-109.
19. Pugh B.F., Tjian R. Mechanism of transcriptional activation by Sp1: evidence for coactivators. Cell. 61:1990;1187-1197.
20. Roder K., Wolf S.S., Beck K.F., Schweizer M. Cooperative binding of NF-Y and Sp1 at the DNase I-hypersensitive site, fatty acid synthase insulin-responsive element 1, located at -500 in the rat fatty acid synthase promoter. J. Biol. Chem. 272:1997;21616-21624.
21. Schug, J., Overton, G.C., 1997. Technical Report CBIL-TR-1997-1001. Computational Biology and Informatics Laboratory, S.o.M., University of Pennsylvania.
22. Smale S.T. Transcription initiation from TATA-less promoters within eukaryotic protein-coding genes. Biochim. Biophys. Acta. 1351:1997;73-88.
23. Smale S.T., Baltimore D. The "initiator" as a transcription control element. Cell. 57:1989;103-113.
24. Song H., Mugnier P., Das A.K., Webb H.M., Evans D.R., Tuite M.F., Hemmings B.A., Barford D. The crystal structure of human eukaryotic release factor eRF1-mechanism of stop codon recognition and peptidyl-tRNA hydrolysis. Cell. 100:2000;311-321.
25. Stansfield I., Jones K.M., Kushnirov V.V., Dagkesamanskaya A.R., Poznyakovski A.I., Paushkin S.V., Nierras C.R., Cox B., Ter-Avanesyan M.D., Tuite M.F. The products of the SUP45 (eRF1) and SUP35 genes interact to mediate translation termination in Saccharomyces cerevisiae. EMBO J. 14:1995;4365-4373.
26. Urbero B., Eurwilaichitr L., Stansfield I., Tassan J.P., Le Goff X., Kress M., Tuite M.F. Expression of the release factor eRF1 (Sup45p) gene of higher eukaryotes in yeast and mammalian tissues. Biochimie. 79:1997;27-36.
27. Wiley S.R., Kraus R.J., Mertz J.E. Functional binding of the "TATA" box binding component of transcription factor TFIID to the -30 region of TATA-less promoters. Proc. Natl. Acad. Sci. U. S. A. 89:1992;5814-5818.
28. Wingender E., Chen X., Hehl R., Karas H., Liebich I., Matys V., Meinhardt T., Pruss M., Reuter I., Schacherer F. TRANSFAC: an integrated system for gene expression regulation. Nucleic Acids Res. 28:2000;316-319.
29. Wright K.L., Moore T.L., Vilen B.J., Brown A.M., Ting J.P. Major histocompatibility complex class II-associated invariant chain gene expression is up-regulated by cooperative interactions of Sp1 and NF-Y. J. Biol. Chem. 270:1995;20978-20986.
30. Zhouravleva G., Frolova L., Le Goff X., Le Guellec R., Inge-Vechtomov S., Kisselev L., Philippe M. Termination of translation in eukaryotes is governed by two interacting polypeptide chain release factors, eRF1 and eRF3. EMBO J. 14:1995;4065-4072.