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Volumn 18, Issue 2, 2003, Pages 131-151

Molecular microbial biodiversity assessment: A biological indicator of soil health

Author keywords

Bioindicators; Ecosystem health; Molecular techniques; Soil quality; Structural biodiversity

Indexed keywords

BIOLOGICAL MARKER; DNA; ENZYME; LIPID; RIBOSOME RNA;

EID: 0141894218     PISSN: 00487554     EISSN: None     Source Type: Journal    
DOI: 10.1515/REVEH.2003.18.2.131     Document Type: Review
Times cited : (17)

References (143)
  • 1
    • 0028563239 scopus 로고
    • Defining and assessing soil quality
    • Doran JW, Coleman DC, Bezdice DF, Stewart BA, eds, Madison, Wisconsin, USA, SSSA Special Publication 35, Soil Science Society of America
    • Doran JW, Parkin TB. Defining and assessing soil quality. In: Doran JW, Coleman DC, Bezdice DF, Stewart BA, eds, Defining Soil Quality for a Sustainable Environment, Madison, Wisconsin, USA, SSSA Special Publication 35, Soil Science Society of America, 1994; 3-21.
    • (1994) Defining Soil Quality for a Sustainable Environment , pp. 3-21
    • Doran, J.W.1    Parkin, T.B.2
  • 2
    • 0141873144 scopus 로고
    • Preface
    • Doran JW, Coleman DC, Bezdice DF, Stewart BA, eds, Madison, Wisconsin, USA, SSSA Special Publication 35, Soil Science Society of America
    • Janke RR, Papendick RI. Preface. In: Doran JW, Coleman DC, Bezdice DF, Stewart BA, eds, Defining Soil Quality for a Sustainable Environment, Madison, Wisconsin, USA, SSSA Special Publication 35, Soil Science Society of America, 1994; ix-xi.
    • (1994) Defining Soil Quality for a Sustainable Environment
    • Janke, R.R.1    Papendick, R.I.2
  • 3
    • 0141873143 scopus 로고    scopus 로고
    • Bioindicators and sensors of soil health and the application of geostatistics
    • Burns RG, Dick RP, eds, New York, NY, USA: Marcel Dekker Inc.
    • Killham K, Staddon WJ. Bioindicators and sensors of soil health and the application of geostatistics. In: Burns RG, Dick RP, eds, Enzymes in the Environment, New York, NY, USA: Marcel Dekker Inc., 2002; 391-405.
    • (2002) Enzymes in the Environment , pp. 391-405
    • Killham, K.1    Staddon, W.J.2
  • 4
    • 85104282856 scopus 로고    scopus 로고
    • Quantitative indicators of soil quality: A minimum data set
    • Doran JW, Jones AJ, eds, Madison, Wisconsin, USA, SSSA Special Publication 49, Soil Science Society of America
    • Doran JW, Parkin TB. Quantitative indicators of soil quality: a minimum data set. In: Doran JW, Jones AJ, eds, Methods for Assessing Soil Quality, Madison, Wisconsin, USA, SSSA Special Publication 49, Soil Science Society of America, 1996; 25-37.
    • (1996) Methods for Assessing Soil Quality , pp. 25-37
    • Doran, J.W.1    Parkin, T.B.2
  • 5
    • 0031411372 scopus 로고    scopus 로고
    • Biological indicators of soil health: Synthesis
    • Pankhurst CE, Doube BM, Gupta VVSR, eds, New York, NY, USA: CAB International
    • Pankhurts CE, Doube BM, Gupta VVSR. Biological indicators of soil health: Synthesis. In: Pankhurst CE, Doube BM, Gupta VVSR, eds, Biological Indicators of Soil Health, New York, NY, USA: CAB International, 1997; 419-435.
    • (1997) Biological Indicators of Soil Health , pp. 419-435
    • Pankhurts, C.E.1    Doube, B.M.2    Gupta, V.V.S.R.3
  • 6
    • 85103070103 scopus 로고    scopus 로고
    • Ecosystem health: An overview
    • Huang PM, Adriano DC, Logan TJ, Checkai RT, eds, Madison, Wisconsin, USA: Soil Science Society of America
    • Coleman DC, Hendrix PF, Odum EP. Ecosystem health: an overview. In: Huang PM, Adriano DC, Logan TJ, Checkai RT, eds, Soil Chemistry and Ecosystem Health, Madison, Wisconsin, USA: Soil Science Society of America, 1998; 1-20.
    • (1998) Soil Chemistry and Ecosystem Health , pp. 1-20
    • Coleman, D.C.1    Hendrix, P.F.2    Odum, E.P.3
  • 7
    • 0141907926 scopus 로고    scopus 로고
    • Preface
    • Huang PM, Adriano DC, Logan TJ, Checkai RT, eds, Madison, Wisconsin, USA: Soil Science Society of America
    • Huang PM, Adriano DC, Logan TJ, Checkai RT. Preface. In: Huang PM, Adriano DC, Logan TJ, Checkai RT, eds, Soil Chemistry and Ecosystem Health, Madison, Wisconsin, USA: Soil Science Society of America, 1998; 1-20.
    • (1998) Soil Chemistry and Ecosystem Health , pp. 1-20
    • Huang, P.M.1    Adriano, D.C.2    Logan, T.J.3    Checkai, R.T.4
  • 8
    • 85103004042 scopus 로고    scopus 로고
    • Ecosystem health and its relationship to the health of the soil subsystem: A conceptual and management perspective
    • Huang PM, ed, Madison, Wisconsin, USA: Soil Science Society of America
    • Rappott DJ, Gaudet C, McCullum J, Miller M. Ecosystem health and its relationship to the health of the soil subsystem: a conceptual and management perspective. In: Huang PM, ed, Soil Chemistry and Ecosystem Health, Madison, Wisconsin, USA: Soil Science Society of America, 1998; 341-359.
    • (1998) Soil Chemistry and Ecosystem Health , pp. 341-359
    • Rappott, D.J.1    Gaudet, C.2    McCullum, J.3    Miller, M.4
  • 9
    • 0004705774 scopus 로고    scopus 로고
    • Answering the critics
    • Rapport D, Costanza R, Epstein PR, Gaudet C, Levins R, eds, Oxford, UK: Blackwell Science, Inc.
    • Rapport DJ. Answering the critics. In: Rapport D, Costanza R, Epstein PR, Gaudet C, Levins R, eds, Ecosystem Health, Oxford, UK: Blackwell Science, Inc., 1998; 41-50.
    • (1998) Ecosystem Health , pp. 41-50
    • Rapport, D.J.1
  • 10
    • 0009653992 scopus 로고    scopus 로고
    • What is sustainability?
    • Rapport D, Costanza R, Epstein PR, Gaudet C, Levins R, eds, Oxford, UK: Blackwell Science, Inc.
    • Costanza R, Mageau M, Norton B, Patten BC. What is sustainability? In: Rapport D, Costanza R, Epstein PR, Gaudet C, Levins R, eds, Ecosystem Health, Oxford, UK: Blackwell Science, Inc., 1998; 231-239.
    • (1998) Ecosystem Health , pp. 231-239
    • Costanza, R.1    Mageau, M.2    Norton, B.3    Patten, B.C.4
  • 11
    • 85102914267 scopus 로고    scopus 로고
    • Assessing soil quality: Practicable standards for sustainable forest productivity in the United States
    • Adams MB, Ramakrishna K, Davidson EA, eds. Madison, Wisconsin, USA: SSSA Special Publication 53, Soil Science Society of America
    • Powers RF, Tiarks AE, Boyle JR. Assessing soil quality: practicable standards for sustainable forest productivity in the United States. In: Adams MB, Ramakrishna K, Davidson EA, eds, The Contribution of Soil Science to the Development of and Implementation of Criteria and Indicators of Sustainable Forest Management. Madison, Wisconsin, USA: SSSA Special Publication 53, Soil Science Society of America, 1998; 53-80.
    • (1998) The Contribution of Soil Science to the Development of and Implementation of Criteria and Indicators of Sustainable Forest Management , pp. 53-80
    • Powers, R.F.1    Tiarks, A.E.2    Boyle, J.R.3
  • 12
    • 0002442449 scopus 로고    scopus 로고
    • Defining and assessing soil health and sustainable productivity
    • Pankhurst CE, Doube BM, Gupta VVSR, eds, New York, NY, USA: CAB International
    • Doran JW, Safley M. Defining and assessing soil health and sustainable productivity. In: Pankhurst CE, Doube BM, Gupta VVSR, eds, Biological Indicators of Soil Health, New York, NY, USA: CAB International, 1997; 1-28.
    • (1997) Biological Indicators of Soil Health , pp. 1-28
    • Doran, J.W.1    Safley, M.2
  • 13
    • 0141929069 scopus 로고    scopus 로고
    • Biomonitoring of soil health by plants
    • Pankhurst CE, Doube BM, Gupta VVSR, eds, New York, NY, USA: CAB International
    • Pandolfini T, Gremigni P, Gabbrielli R. Biomonitoring of soil health by plants. In: Pankhurst CE, Doube BM, Gupta VVSR, eds, Biological Indicators of Soil Health, New York, NY, USA: CAB International, 1997; 325-347.
    • (1997) Biological Indicators of Soil Health , pp. 325-347
    • Pandolfini, T.1    Gremigni, P.2    Gabbrielli, R.3
  • 15
    • 0001924221 scopus 로고    scopus 로고
    • Bioindicators to detect contamination of soils with special reference to heavy metals
    • Pankhurst CE, Doube BM, Gupta VVSR, eds, New York, NY, USA: CAB International
    • Mhatre GN, Pankhurst CE. Bioindicators to detect contamination of soils with special reference to heavy metals. In: Pankhurst CE, Doube BM, Gupta VVSR, eds, Biological Indicators of Soil Health, New York, NY, USA: CAB International, 1997; 349-369.
    • (1997) Biological Indicators of Soil Health , pp. 349-369
    • Mhatre, G.N.1    Pankhurst, C.E.2
  • 16
    • 0036661717 scopus 로고    scopus 로고
    • Electrochemical biosensors for environmental monitoring
    • Rishpon J. Electrochemical biosensors for environmental monitoring. Rev Environ Health 2002; 17: 219-247.
    • (2002) Rev Environ Health , vol.17 , pp. 219-247
    • Rishpon, J.1
  • 17
    • 0000867365 scopus 로고    scopus 로고
    • Direct approaches for studying soil microbes
    • van Elsas JD, Trevors JT, Wellington EMH, eds, New York, NY, USA: Marcel Dekker
    • Hartmann A, Abmus B, Kirchhof G, Schloter M. Direct approaches for studying soil microbes. In: van Elsas JD, Trevors JT, Wellington EMH, eds, Modern Soil Microbiology, New York, NY, USA: Marcel Dekker, 1997; 279-309.
    • (1997) Modern Soil Microbiology , pp. 279-309
    • Hartmann, A.1    Abmus, B.2    Kirchhof, G.3    Schloter, M.4
  • 18
    • 0028181948 scopus 로고
    • Biodiversity and stability in grasslands
    • Tilman D, Downing JA. Biodiversity and stability in grasslands. Nature 1994; 367: 363-365.
    • (1994) Nature , vol.367 , pp. 363-365
    • Tilman, D.1    Downing, J.A.2
  • 21
    • 0001338773 scopus 로고
    • The measurement of species diversity
    • Peet RK. The measurement of species diversity. Ann Rev Ecol Syst 1974; 5: 285-307.
    • (1974) Ann Rev Ecol Syst , vol.5 , pp. 285-307
    • Peet, R.K.1
  • 23
    • 0030297736 scopus 로고    scopus 로고
    • Biodiversity and industry ecosystem management
    • Coleman WG. Biodiversity and industry ecosystem management. Environ Manage 1996; 20: 815-825.
    • (1996) Environ Manage , vol.20 , pp. 815-825
    • Coleman, W.G.1
  • 25
    • 0035691184 scopus 로고    scopus 로고
    • Biodiversity of soil animals and its function
    • Wolters V. Biodiversity of soil animals and its function. Eur J Soil Biol 2001; 37: 221-227.
    • (2001) Eur J Soil Biol , vol.37 , pp. 221-227
    • Wolters, V.1
  • 27
    • 0002351667 scopus 로고
    • Selection of important areas for wildlife conservation in Great Britain: The Nature Conservancy Council's approach
    • Usher MB, ed, London, UK: Chapman and Hall
    • Ratcliffe DA. Selection of important areas for wildlife conservation in Great Britain: the Nature Conservancy Council's approach. In: Usher MB, ed, Wildlife Conservation Evaluation, London, UK: Chapman and Hall, 1986; 136-159.
    • (1986) Wildlife Conservation Evaluation , pp. 136-159
    • Ratcliffe, D.A.1
  • 28
    • 84986860243 scopus 로고
    • Some remarks on disturbance and its relations to diversity and stability
    • Van der Maarel E. Some remarks on disturbance and its relations to diversity and stability. J Veg Sci 1993; 4: 733-736.
    • (1993) J Veg Sci , vol.4 , pp. 733-736
    • Van der Maarel, E.1
  • 29
    • 0036023979 scopus 로고    scopus 로고
    • Assessment of soil contamination - A functional perspective
    • Van Straalen NM. Assessment of soil contamination-a functional perspective. Biodegradation 2002; 13: 41-52.
    • (2002) Biodegradation , vol.13 , pp. 41-52
    • Van Straalen, N.M.1
  • 30
    • 0028870859 scopus 로고
    • Empirical evidence that declining species diversity may alter the performance of terrestrial ecosystems
    • Naeem S, Thompson LJ, Lawler SP, Lawton JH, Woodfin RM. Empirical evidence that declining species diversity may alter the performance of terrestrial ecosystems. Phil Trans R Soc Lond B 1995; 347: 249-262.
    • (1995) Phil Trans R Soc Lond B , vol.347 , pp. 249-262
    • Naeem, S.1    Thompson, L.J.2    Lawler, S.P.3    Lawton, J.H.4    Woodfin, R.M.5
  • 31
    • 0030846289 scopus 로고    scopus 로고
    • The effects of plant composition and diversity on ecosystem processes
    • Hooper D, Vitousek PM. The effects of plant composition and diversity on ecosystem processes. Science 1997; 277: 1302-1305.
    • (1997) Science , vol.277 , pp. 1302-1305
    • Hooper, D.1    Vitousek, P.M.2
  • 32
    • 0001468814 scopus 로고    scopus 로고
    • Which species? What kind of diversity? Which ecosystem function? Some problems in studies of relations between biodiversity and ecosystem function
    • Bengtsson J. Which species? What kind of diversity? Which ecosystem function? Some problems in studies of relations between biodiversity and ecosystem function. Appl Soil Ecol 1998; 6: 191-199.
    • (1998) Appl Soil Ecol , vol.6 , pp. 191-199
    • Bengtsson, J.1
  • 35
    • 0034601498 scopus 로고    scopus 로고
    • Ecology goes underground
    • Copley J. Ecology goes underground. Nature 2000; 406: 452-454.
    • (2000) Nature , vol.406 , pp. 452-454
    • Copley, J.1
  • 37
    • 0033527041 scopus 로고    scopus 로고
    • Spatial scaling laws yield a synthetic theory of biodiversity
    • Ritchie ME, Olff H. Spatial scaling laws yield a synthetic theory of biodiversity. Nature 1999; 400: 557-560.
    • (1999) Nature , vol.400 , pp. 557-560
    • Ritchie, M.E.1    Olff, H.2
  • 38
    • 0036407157 scopus 로고    scopus 로고
    • What are bacterial species?
    • Cohan FM. What are bacterial species? Annu Rev Microbiol 2002; 56: 457-487.
    • (2002) Annu Rev Microbiol , vol.56 , pp. 457-487
    • Cohan, F.M.1
  • 39
    • 0035694116 scopus 로고    scopus 로고
    • A future for soil ecology? Connecting the system levels: Moving from genomes to ecosystems
    • Eijsackers H. A future for soil ecology? Connecting the system levels: moving from genomes to ecosystems. Eur J Soil Biol 2001; 37: 213-220.
    • (2001) Eur J Soil Biol , vol.37 , pp. 213-220
    • Eijsackers, H.1
  • 41
    • 0003721384 scopus 로고
    • Cambridge, UK: Cambridge University Press
    • Killham K. Soil Ecology, Cambridge, UK: Cambridge University Press, 1994.
    • (1994) Soil Ecology
    • Killham, K.1
  • 43
    • 0028684202 scopus 로고
    • Microbial indicators of soil quality
    • Doran JW, Coleman DC, Bezdice DF, Stewart BA, eds, Madison, Wisconsin, USA, SSSA Special Publication 35, Soil Science Society of America
    • Turco RF, Kennedy AC, Jawson MD. Microbial indicators of soil quality. In: Doran JW, Coleman DC, Bezdice DF, Stewart BA, eds, Defining Soil Quality for a Sustainable Environment, Madison, Wisconsin, USA, SSSA Special Publication 35, Soil Science Society of America, 1994; 73-90.
    • (1994) Defining Soil Quality for a Sustainable Environment , pp. 73-90
    • Turco, R.F.1    Kennedy, A.C.2    Jawson, M.D.3
  • 44
    • 0000518894 scopus 로고
    • Microbial biomass in soil: Measurement and turnover
    • Paul EA, Ladd JN, eds, New York, NY, USA: Marcel Dekker
    • Jenkinson DS, Ladd JN. Microbial biomass in soil: measurement and turnover. In: Paul EA, Ladd JN, eds, Soil Biochemistry, New York, NY, USA: Marcel Dekker, 1981; 415-471.
    • (1981) Soil Biochemistry , pp. 415-471
    • Jenkinson, D.S.1    Ladd, J.N.2
  • 45
    • 0002635747 scopus 로고    scopus 로고
    • Biodiversity of soil organisms as an indicator of soil health
    • Pankhurst C, Doube BM, Gupta VVSR, eds, Wallingford, UK: CAB International
    • Pankhurts CE. Biodiversity of soil organisms as an indicator of soil health. In: Pankhurst C, Doube BM, Gupta VVSR, eds, Biological Indicators of Soil Health, Wallingford, UK: CAB International, 1997; 297-324.
    • (1997) Biological Indicators of Soil Health , pp. 297-324
    • Pankhurts, C.E.1
  • 46
    • 0012294001 scopus 로고
    • Organisation of assemblages of decomposer fungi in space and time
    • Giller P, Gee J, eds, Oxford, UK: Blackwell
    • Swift MJ. Organisation of assemblages of decomposer fungi in space and time. In: Giller P, Gee J, eds, Organisation of Ecological Communities: Past and Present, Oxford, UK: Blackwell, 1987; 229-253.
    • (1987) Organisation of Ecological Communities: Past and Present , pp. 229-253
    • Swift, M.J.1
  • 47
    • 0026614856 scopus 로고
    • The fungus Armillaria bulbosa is among the largest and oldest living organisms
    • Smith ML, Bruhn JN, Anderson JB. The fungus Armillaria bulbosa is among the largest and oldest living organisms. Nature 1992; 356: 428-431.
    • (1992) Nature , vol.356 , pp. 428-431
    • Smith, M.L.1    Bruhn, J.N.2    Anderson, J.B.3
  • 48
    • 0002299193 scopus 로고
    • Mycelial interconnectedness
    • Gow NAR, Gadd GM, eds, London, UK: Chapman and Hall
    • Rayner ADM, Griffith GS, Ainsworth AM. Mycelial interconnectedness. In: Gow NAR, Gadd GM, eds, The Growing Fungus, London, UK: Chapman and Hall, 1994; 22-40.
    • (1994) The Growing Fungus , pp. 22-40
    • Rayner, A.D.M.1    Griffith, G.S.2    Ainsworth, A.M.3
  • 49
    • 0029474101 scopus 로고
    • A hierarchial approach to evaluating the significance of soil biodiversity to biogeochemical cycling
    • Beare MH, Coleman DC, Crossley DA, Hendrix PF, Odum EP. A hierarchial approach to evaluating the significance of soil biodiversity to biogeochemical cycling. Plant Soil 1995; 170: 5-22.
    • (1995) Plant Soil , vol.170 , pp. 5-22
    • Beare, M.H.1    Coleman, D.C.2    Crossley, D.A.3    Hendrix, P.F.4    Odum, E.P.5
  • 50
    • 0000905060 scopus 로고
    • Functional attributes of biodiversity in land use systems
    • Greenland DJ, Szabolcs I, eds, Wallingford, UK: CAB International
    • Anderson JM. Functional attributes of biodiversity in land use systems. In: Greenland DJ, Szabolcs I, eds, Soil Resilience and Sustainable Land Use, Wallingford, UK: CAB International, 1994; 267-290.
    • (1994) Soil Resilience and Sustainable Land Use , pp. 267-290
    • Anderson, J.M.1
  • 52
    • 0025256110 scopus 로고
    • Comparison of phenotypic diversity and DNA heterogeneity in a population of soil bacteria
    • Torsvik V, Salte K, Sorheim R, Goksoy J. Comparison of phenotypic diversity and DNA heterogeneity in a population of soil bacteria. Appl Environ Microbiol 1990; 56: 776-781.
    • (1990) Appl Environ Microbiol , vol.56 , pp. 776-781
    • Torsvik, V.1    Salte, K.2    Sorheim, R.3    Goksoy, J.4
  • 53
  • 56
    • 0000008516 scopus 로고
    • Biochemical analysis of biomass, community structure, nutritional status, and metabolic activity of microbial communities in soil
    • Stotsky G, Bollag J-M, eds. New York, NY, USA: Dekker
    • Tunlid A, White DC. Biochemical analysis of biomass, community structure, nutritional status, and metabolic activity of microbial communities in soil. In: Stotsky G, Bollag J-M, eds, Soil Biochemistry. Vol. 7. New York, NY, USA: Dekker 1992; 229-262.
    • (1992) Soil Biochemistry , vol.7 , pp. 229-262
    • Tunlid, A.1    White, D.C.2
  • 57
    • 0001587574 scopus 로고
    • Soil lipids: Origin, nature content, decomposition, and effect on soil physical properties
    • Stotsky G, Bollag J-M, eds. New York, NY, USA: Dekker
    • Dinel H, Schnitzer M, Mehuys GR. Soil lipids: origin, nature content, decomposition, and effect on soil physical properties. In: Stotsky G, Bollag J-M, eds, Soil Biochemistry. Vol. 6. New York, NY, USA: Dekker, 1990.
    • (1990) Soil Biochemistry , vol.6
    • Dinel, H.1    Schnitzer, M.2    Mehuys, G.R.3
  • 58
    • 0024739976 scopus 로고
    • Lipid analysis in microbial ecology
    • Vestal JR, White DC. Lipid analysis in microbial ecology. Bioscience 1989; 39: 535-541.
    • (1989) Bioscience , vol.39 , pp. 535-541
    • Vestal, J.R.1    White, D.C.2
  • 59
    • 44049118355 scopus 로고
    • Signature fatty acids in phospholipids and lipopolysaccharides as indicators of microbial biomass and community structure in agricultural soils
    • Zelles L, Bai QY, Beck T, Beese F. Signature fatty acids in phospholipids and lipopolysaccharides as indicators of microbial biomass and community structure in agricultural soils. Soil Biol Biochem 1992; 24: 317-323.
    • (1992) Soil Biol Biochem , vol.24 , pp. 317-323
    • Zelles, L.1    Bai, Q.Y.2    Beck, T.3    Beese, F.4
  • 60
    • 43949170345 scopus 로고
    • Fractionation of fatty acids derived from soil lipids by solid phase extraction and their quantitative analysis by GC-MS
    • Zelles L, Bai QY. Fractionation of fatty acids derived from soil lipids by solid phase extraction and their quantitative analysis by GC-MS. Soil Biol Biochem 1993; 25: 495-507.
    • (1993) Soil Biol Biochem , vol.25 , pp. 495-507
    • Zelles, L.1    Bai, Q.Y.2
  • 61
    • 0025919424 scopus 로고
    • Classification and characterization of heterotrophic microbial communities on the basis of patterns of community-level sole-carbon-source utilization
    • Garland JL, Mills AL. Classification and characterization of heterotrophic microbial communities on the basis of patterns of community-level sole-carbon-source utilization. Appl Environ Microbiol 1991; 57: 2351-2359.
    • (1991) Appl Environ Microbiol , vol.57 , pp. 2351-2359
    • Garland, J.L.1    Mills, A.L.2
  • 62
    • 0030930388 scopus 로고    scopus 로고
    • Use of rhizosphere carbon sources in sole carbon source tests to discriminate soil microbial communities
    • Campbell CD, Grayston SJ, Hirst DJ. Use of rhizosphere carbon sources in sole carbon source tests to discriminate soil microbial communities. J Microbiol Methods 1997; 30: 33-41.
    • (1997) J Microbiol Methods , vol.30 , pp. 33-41
    • Campbell, C.D.1    Grayston, S.J.2    Hirst, D.J.3
  • 63
    • 0030301457 scopus 로고    scopus 로고
    • Functional biodiversity of microbial communities in the rhizospheres of hybrid larch (Larix eurolepis) and sitka spruce (Picea sitchensis)
    • Grayston SJ, Campbell CD. Functional biodiversity of microbial communities in the rhizospheres of hybrid larch (Larix eurolepis) and sitka spruce (Picea sitchensis). Tree Physiol 1996; 16: 1031-1038.
    • (1996) Tree Physiol , vol.16 , pp. 1031-1038
    • Grayston, S.J.1    Campbell, C.D.2
  • 65
    • 0032213361 scopus 로고    scopus 로고
    • Changes in soil microbial biomass and microbial activities in response to 7 years simulated pollutant nitrogen deposition on a heathland and two grasslands
    • Johnson D, Leake JR, Lee JA, Campbell CD. Changes in soil microbial biomass and microbial activities in response to 7 years simulated pollutant nitrogen deposition on a heathland and two grasslands. Environ Poll 1998; 103: 239-250.
    • (1998) Environ Poll , vol.103 , pp. 239-250
    • Johnson, D.1    Leake, J.R.2    Lee, J.A.3    Campbell, C.D.4
  • 67
    • 0023866522 scopus 로고    scopus 로고
    • DNA probe method for the detection of specific microorganisms in the soil bacterial community
    • Holben WE, Jansson JK, Chelm BK, Tiedje JM. DNA probe method for the detection of specific microorganisms in the soil bacterial community. Appl Environ Microbiol 1998; 64: 703-711.
    • (1998) Appl Environ Microbiol , vol.64 , pp. 703-711
    • Holben, W.E.1    Jansson, J.K.2    Chelm, B.K.3    Tiedje, J.M.4
  • 68
    • 12744281935 scopus 로고
    • The extraction and purification of microbial DNA from sediments
    • Ogram A, Sayler GS, Barkay T. The extraction and purification of microbial DNA from sediments. J Microbiol Methods 1987; 7: 57-66.
    • (1987) J Microbiol Methods , vol.7 , pp. 57-66
    • Ogram, A.1    Sayler, G.S.2    Barkay, T.3
  • 70
    • 0002380902 scopus 로고
    • Isolation and purification of DNA from soil
    • Weaver RW, ed, Madison, WI, USA: Soil Science Society of America
    • Holben WE. Isolation and purification of DNA from soil. In: Weaver RW, ed, Methods of Soil Analysis. Part 2, Microbiological and Biochemical Properties, Madison, WI, USA: Soil Science Society of America, 1994; 727-751.
    • (1994) Methods of Soil Analysis. Part 2, Microbiological and Biochemical Properties , pp. 727-751
    • Holben, W.E.1
  • 72
    • 0004136246 scopus 로고    scopus 로고
    • Cold Spring Harbor, NY, USA: Cold Spring Harbor Laboratory Press
    • rd ed.. Cold Spring Harbor, NY, USA: Cold Spring Harbor Laboratory Press, 2001. Online edition available at http://www.molecularcloning. com/public/vision/index.html
    • (2001) rd Ed.
    • Sambrook, J.1    Russel, D.2
  • 73
    • 0028269319 scopus 로고
    • Quantitative cell lysis of indigenous microorganisms and rapid extraction of microbial DNA from sediment
    • More MI, Herrick JB, Silva MC, Ghoirse WC, Madsen EL. Quantitative cell lysis of indigenous microorganisms and rapid extraction of microbial DNA from sediment. Appl Environ Microbiol 1994; 60: 1572-1580.
    • (1994) Appl Environ Microbiol , vol.60 , pp. 1572-1580
    • More, M.I.1    Herrick, J.B.2    Silva, M.C.3    Ghoirse, W.C.4    Madsen, E.L.5
  • 74
    • 0029759760 scopus 로고    scopus 로고
    • Rapid extraction method of DNA and rRNA from sediments by a novel hydroxyapatite spin-column method
    • Purdy KJ, Embley TM, Takii S, Nedwell DB. Rapid extraction method of DNA and rRNA from sediments by a novel hydroxyapatite spin-column method. Appl Environ Microbiol 1996; 62: 3905-3907.
    • (1996) Appl Environ Microbiol , vol.62 , pp. 3905-3907
    • Purdy, K.J.1    Embley, T.M.2    Takii, S.3    Nedwell, D.B.4
  • 75
    • 0001905011 scopus 로고    scopus 로고
    • Culturable and nonculturable bacteria in soil
    • van Elsas JD, Trevors JT, Wellington EMH, eds, New York, NY, USA: Marcel Dekker
    • Bakken LR. Culturable and nonculturable bacteria in soil. In: van Elsas JD, Trevors JT, Wellington EMH, eds, Modern Soil Microbiology, New York, NY, USA: Marcel Dekker, 1997; 47-61.
    • (1997) Modern Soil Microbiology , pp. 47-61
    • Bakken, L.R.1
  • 77
    • 0029391360 scopus 로고
    • DNA-based monitoring of total bacterial community structure in environmental samples
    • Holben WE, Harris D. DNA-based monitoring of total bacterial community structure in environmental samples. Mol Ecol 1995; 45: 627-631.
    • (1995) Mol Ecol , vol.45 , pp. 627-631
    • Holben, W.E.1    Harris, D.2
  • 79
    • 0141976935 scopus 로고
    • Applications of molecular techniques to soil biochemistry
    • Stotsky G, Bollag J-M, eds. New York, NY, USA: Dekker
    • Sayler GS, Nikbakh K, Fleming JT, Packard J. Applications of molecular techniques to soil biochemistry. In: Stotsky G, Bollag J-M, eds, Soil Biochemistry. Vol. 7. New York, NY, USA: Dekker, 1992; 131-172.
    • (1992) Soil Biochemistry , vol.7 , pp. 131-172
    • Sayler, G.S.1    Nikbakh, K.2    Fleming, J.T.3    Packard, J.4
  • 80
    • 0023184331 scopus 로고
    • Bacterial evolution
    • Woese CR. Bacterial evolution. Microbiol Rev 1987; 51: 221-271.
    • (1987) Microbiol Rev , vol.51 , pp. 221-271
    • Woese, C.R.1
  • 82
    • 0001815418 scopus 로고
    • Sequence databases
    • Akkermans A, ed, Dordrecht, The Netherlands: Kluwer Academic Publishers
    • Ludwig W. Sequence databases. In: Akkermans A, ed, Molecular Microbial Ecology Manual, Dordrecht, The Netherlands: Kluwer Academic Publishers, 1995; 1-22.
    • (1995) Molecular Microbial Ecology Manual , pp. 1-22
    • Ludwig, W.1
  • 96
    • 0030765449 scopus 로고    scopus 로고
    • Database on the structure of large ribosomal subunit RNA
    • De Rijk P, Van de Peer Y, De Wachter R. Database on the structure of large ribosomal subunit RNA. Nucleic Acid Res 1997; 25: 117-116.
    • (1997) Nucleic Acid Res , vol.25 , pp. 117-116
    • De Rijk, P.1    Van de Peer, Y.2    De Wachter, R.3
  • 97
    • 0029981542 scopus 로고    scopus 로고
    • Database on the structure of large ribosomal subunit RNA
    • De Rijk P, Van de Peer Y, De Wachter R. Database on the structure of large ribosomal subunit RNA. Nucleic Acid Res 1996; 24: 92-97.
    • (1996) Nucleic Acid Res , vol.24 , pp. 92-97
    • De Rijk, P.1    Van de Peer, Y.2    De Wachter, R.3
  • 111
    • 0002842298 scopus 로고
    • The analysis of natural microbial communities by ribosomal RNA sequences
    • Pace N, Stahl DA, Lane DJ, Olsen GJ. The analysis of natural microbial communities by ribosomal RNA sequences. Microbiol Ecol 1985; 9: 1-56.
    • (1985) Microbiol Ecol , vol.9 , pp. 1-56
    • Pace, N.1    Stahl, D.A.2    Lane, D.J.3    Olsen, G.J.4
  • 112
    • 0025366456 scopus 로고
    • 16S rRNA sequences reveal numerous uncultured inhabitants in a natural community
    • Ward DM, Weller R, Bateson MM. 16S rRNA sequences reveal numerous uncultured inhabitants in a natural community. Nature 1990; 345: 63-65.
    • (1990) Nature , vol.345 , pp. 63-65
    • Ward, D.M.1    Weller, R.2    Bateson, M.M.3
  • 113
    • 0026764237 scopus 로고
    • Occurrence of novel groups of the domain Bacteria as revealed by analysis of genetic material isolated from an Australian terrestrial environment
    • Liesack W, Stackebrandt E. Occurrence of novel groups of the domain Bacteria as revealed by analysis of genetic material isolated from an Australian terrestrial environment. J Bact 1992; 174: 2072-2078.
    • (1992) J Bact , vol.174 , pp. 2072-2078
    • Liesack, W.1    Stackebrandt, E.2
  • 114
    • 0027441283 scopus 로고
    • Bacterial diversity in a soil sample from a subtropical Australian environment as determined by 16S rDNA analysis
    • Stackebrandt E, Liesack W, Goebel BM. Bacterial diversity in a soil sample from a subtropical Australian environment as determined by 16S rDNA analysis. FASEB J 1993; 7: 232-236.
    • (1993) FASEB J , vol.7 , pp. 232-236
    • Stackebrandt, E.1    Liesack, W.2    Goebel, B.M.3
  • 116
    • 0141976933 scopus 로고
    • Enumerating Frankia in soil using molecular methods
    • Ritz J, Dighton J, Giller K, eds. Exeter, UK: Wiley
    • Myrold DD, Hilger AB, Huss-Danell K, Martin KJ. Enumerating Frankia in soil using molecular methods. In: Ritz J, Dighton J, Giller K, eds, Beyond the Biomass. Exeter, UK: Wiley 1994; 39-48.
    • (1994) Beyond the Biomass , pp. 39-48
    • Myrold, D.D.1    Hilger, A.B.2    Huss-Danell, K.3    Martin, K.J.4
  • 117
    • 0001093837 scopus 로고    scopus 로고
    • Microbial diversity in soil: The need for a combined approach using molecular and cultivation techniques
    • van Elsas JD, Trevors JT, Wellington EMH, eds, New York, NY, USA: Marcel Dekker
    • Liesack W, Janssen PH, Rainey FA, Ward-Rainey NL, Stackebrandt E. Microbial diversity in soil: the need for a combined approach using molecular and cultivation techniques. In: van Elsas JD, Trevors JT, Wellington EMH, eds, Modern Soil Microbiology, New York, NY, USA: Marcel Dekker, 1997; 375-439.
    • (1997) Modern Soil Microbiology , pp. 375-439
    • Liesack, W.1    Janssen, P.H.2    Rainey, F.A.3    Ward-Rainey, N.L.4    Stackebrandt, E.5
  • 119
    • 0000425025 scopus 로고    scopus 로고
    • Chemical and molecular approaches for rapid assessment of the biological status of soils
    • Pankhurst CE, Doube BM, Gupta VVSR, eds, New York, NY, USA: CAB International
    • White DC, Macnaughton SJ. Chemical and molecular approaches for rapid assessment of the biological status of soils. In: Pankhurst CE, Doube BM, Gupta VVSR, eds, Biological Indicators of Soil Health, New York, NY, USA: CAB International, 1997; 371-396.
    • (1997) Biological Indicators of Soil Health , pp. 371-396
    • White, D.C.1    Macnaughton, S.J.2
  • 120
    • 0026225472 scopus 로고
    • Fecal coliforms in soil detected by polymerase chain reaction and DNA-DNA hybridization
    • Josephson KL, Pillai SD, Way J, Gerba CP, Pepper IL. Fecal coliforms in soil detected by polymerase chain reaction and DNA-DNA hybridization. Soil Sci Soc Am J 1991; 55: 1326-1332.
    • (1991) Soil Sci Soc Am J , vol.55 , pp. 1326-1332
    • Josephson, K.L.1    Pillai, S.D.2    Way, J.3    Gerba, C.P.4    Pepper, I.L.5
  • 122
    • 0026745065 scopus 로고
    • Detection and enumeration of bacteria in soil by direct DNA extraction and polymerase chain reaction
    • Picard C, Ponsonnet C, Paget E, Nesme X, Simonet P. Detection and enumeration of bacteria in soil by direct DNA extraction and polymerase chain reaction. Appl Environ Microbiol 1992; 58: 2717-2722.
    • (1992) Appl Environ Microbiol , vol.58 , pp. 2717-2722
    • Picard, C.1    Ponsonnet, C.2    Paget, E.3    Nesme, X.4    Simonet, P.5
  • 123
    • 0041589931 scopus 로고    scopus 로고
    • Molecular methods for assessing and manipulating the diversity of microbial populations and processes
    • Burns RG, Dick RP, eds, New York, NY, USA: Marcel Dekker Inc.
    • Sørensen SJ, Müller AK, Hansen LH, Rasmussen LD, de Lipthay JR, Barkay T. Molecular Methods for Assessing and Manipulating the Diversity of Microbial Populations and Processes. In: Burns RG, Dick RP, eds, Enzymes in the Environment, New York, NY, USA: Marcel Dekker Inc., 2002; 363-389.
    • (2002) Enzymes in the Environment , pp. 363-389
    • Sørensen, S.J.1    Müller, A.K.2    Hansen, L.H.3    Rasmussen, L.D.4    De Lipthay, J.R.5    Barkay, T.6
  • 124
    • 0025752564 scopus 로고
    • Deletion mutagenesis during polymerase chain reaction: Dependence on DNA polymerase
    • Cariello NF, Thilly WG, Swenberg JA, Skopek TR. Deletion mutagenesis during polymerase chain reaction: dependence on DNA polymerase. Gene 1991; 99: 105-108.
    • (1991) Gene , vol.99 , pp. 105-108
    • Cariello, N.F.1    Thilly, W.G.2    Swenberg, J.A.3    Skopek, T.R.4
  • 125
    • 0025731189 scopus 로고
    • 16S rRNA sequences of uncultivated hot spring cyanobacterial mat inhabitants retrieved as randomly primed cDNA
    • Weller R, Walsh-Weller J, Ward DM. 16S rRNA sequences of uncultivated hot spring cyanobacterial mat inhabitants retrieved as randomly primed cDNA. Appl Environ Microbiol 1991; 57: 1146-1151.
    • (1991) Appl Environ Microbiol , vol.57 , pp. 1146-1151
    • Weller, R.1    Walsh-Weller, J.2    Ward, D.M.3
  • 127
    • 12044254346 scopus 로고
    • Surveys of gene families using polymerase chain reaction: PCR selection and PCR drift
    • Wagner A, Blackstone N, Cartwright P, Dick M, Misof B, Snow P et al. Surveys of gene families using polymerase chain reaction: PCR selection and PCR drift. Syst Biol 1994; 42: 250-261.
    • (1994) Syst Biol , vol.42 , pp. 250-261
    • Wagner, A.1    Blackstone, N.2    Cartwright, P.3    Dick, M.4    Misof, B.5    Snow, P.6
  • 128
    • 0028184602 scopus 로고
    • Estimation of diversity and community structure through restricttion fragment length polymorphism distribution analysis of bacterial 16S rRNA genes from a microbial mat at an active, hydrothermal vent system, Loihi Seamount, Hawaii
    • Moyer CL, Dobbs FC, Karl DM. Estimation of diversity and community structure through restricttion fragment length polymorphism distribution analysis of bacterial 16S rRNA genes from a microbial mat at an active, hydrothermal vent system, Loihi Seamount, Hawaii. Appl Environ Microbiol 1994; 60: 871-879.
    • (1994) Appl Environ Microbiol , vol.60 , pp. 871-879
    • Moyer, C.L.1    Dobbs, F.C.2    Karl, D.M.3
  • 129
    • 0001971276 scopus 로고    scopus 로고
    • Microbial biomarkers
    • van Elsas JD, Trevors JT, Wellington EMH, eds, New York, NY, USA: Marcel Dekker
    • Morgan JAW, Winstanley C. Microbial biomarkers. In: van Elsas JD, Trevors JT, Wellington EMH, eds, Modern Soil Microbiology, New York, NY, USA: Marcel Dekker, 1997; 331-352.
    • (1997) Modern Soil Microbiology , pp. 331-352
    • Morgan, J.A.W.1    Winstanley, C.2
  • 130
    • 0027460328 scopus 로고
    • Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA
    • Muyzer G, de Waal EC, Uitterlinder AG. Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA. Appl Environ Microbiol 1993; 59: 695-700.
    • (1993) Appl Environ Microbiol , vol.59 , pp. 695-700
    • Muyzer, G.1    De Waal, E.C.2    Uitterlinder, A.G.3
  • 131
    • 0031902077 scopus 로고    scopus 로고
    • Monitoring impact of pesticide treatment on bacterial soil communities by metabolic and genetic fingerprinting in addition to conventional testing procedures
    • Engelen B, Meinken K, von Wintzingerode F, Heuer H, Malkomes H-P, Backhaus H. Monitoring impact of pesticide treatment on bacterial soil communities by metabolic and genetic fingerprinting in addition to conventional testing procedures. Appl Environ Microbiol 1998; 64: 2814-2821.
    • (1998) Appl Environ Microbiol , vol.64 , pp. 2814-2821
    • Engelen, B.1    Meinken, K.2    Von Wintzingerode, F.3    Heuer, H.4    Malkomes, H.-P.5    Backhaus, H.6
  • 132
    • 0031909733 scopus 로고    scopus 로고
    • Phylogeny of the main bacterial 16S rRNA sequences in Drentse A grassland soils (The Netherlands)
    • Felske A, Wolterink A, van Lis R, Akkermans ADL. Phylogeny of the main bacterial 16S rRNA sequences in Drentse A grassland soils (The Netherlands). Appl Environ Microbiol 1998; 64: 871-879.
    • (1998) Appl Environ Microbiol , vol.64 , pp. 871-879
    • Felske, A.1    Wolterink, A.2    Van Lis, R.3    Akkermans, A.D.L.4
  • 133
    • 0002912874 scopus 로고    scopus 로고
    • Application of denaturing gradient gel electrophoresis and temperature gradient gel electrophoresis for studying soil microbial communities
    • van Elsas JD, Trevors JT, Wellington EMH, eds, New York, NY, USA: Marcel Dekker
    • Heuer H, Smalla K. Application of denaturing gradient gel electrophoresis and temperature gradient gel electrophoresis for studying soil microbial communities. In: van Elsas JD, Trevors JT, Wellington EMH, eds, Modern Soil Microbiology, New York, NY, USA: Marcel Dekker, 1997; 353-373.
    • (1997) Modern Soil Microbiology , pp. 353-373
    • Heuer, H.1    Smalla, K.2
  • 134
    • 0033025914 scopus 로고    scopus 로고
    • Effect of herbicides on soil microbial communities estimated by analysis of 16S rRNA gene fingerprinting and community level physiological profiles
    • Fantroussi SE, Verschuere HL, Verstraete W, Top EM. Effect of herbicides on soil microbial communities estimated by analysis of 16S rRNA gene fingerprinting and community level physiological profiles. Appl Environ Microbiol 1999; 65: 982-988.
    • (1999) Appl Environ Microbiol , vol.65 , pp. 982-988
    • Fantroussi, S.E.1    Verschuere, H.L.2    Verstraete, W.3    Top, E.M.4
  • 135
    • 0032432258 scopus 로고    scopus 로고
    • Analysis of broad-scale differences in microbial community composition of two pristine forest soils
    • Chatzinotas A, Sandaa RA, Schohuber W, Amann R, Daae FL, Torsvik V et al. Analysis of broad-scale differences in microbial community composition of two pristine forest soils. Syst Appl Microbiol 1998; 21: 579-587.
    • (1998) Syst Appl Microbiol , vol.21 , pp. 579-587
    • Chatzinotas, A.1    Sandaa, R.A.2    Schohuber, W.3    Amann, R.4    Daae, F.L.5    Torsvik, V.6
  • 136
    • 0032792809 scopus 로고    scopus 로고
    • Abundance and diversity of Archae in heavy-metal-contaminated soils
    • Sandaa RA, Enger O, Torsvik V. Abundance and diversity of Archae in heavy-metal-contaminated soils. Appl Environ Microbiol 1999; 65: 3293-3297.
    • (1999) Appl Environ Microbiol , vol.65 , pp. 3293-3297
    • Sandaa, R.A.1    Enger, O.2    Torsvik, V.3
  • 137
    • 0027871331 scopus 로고
    • Differentiation of bacterial-feeding nematodes in soil ecological studies by means of arbitrarily primed PCR
    • Van der Knaap E, Rodríguez RJ, Freckman DW. Differentiation of bacterial-feeding nematodes in soil ecological studies by means of arbitrarily primed PCR. Soil Biol Biochem 1993; 25: 1141-1151.
    • (1993) Soil Biol Biochem , vol.25 , pp. 1141-1151
    • Van der Knaap, E.1    Rodríguez, R.J.2    Freckman, D.W.3
  • 138
    • 0141873128 scopus 로고
    • Assessment of diversity of 2,4-D-catabolic plasmids in bacteria isolated from different soils
    • Madison, Wisconsin, USA: American Society of Agronomy
    • Calabrese VGM, Holben WE, Sexstone AJ. Assessment of diversity of 2,4-D-catabolic plasmids in bacteria isolated from different soils. Agronomy Abstracts. Madison, Wisconsin, USA: American Society of Agronomy, 1992; 260.
    • (1992) Agronomy Abstracts , pp. 260
    • Calabrese, V.G.M.1    Holben, W.E.2    Sexstone, A.J.3
  • 139
    • 0034628432 scopus 로고    scopus 로고
    • Stable-isotope probing as a tool in microbial ecology
    • Radajewski S, Ineson P, Parekh NR, Murrell JC. Stable-isotope probing as a tool in microbial ecology. Nature 2000; 403: 646-649.
    • (2000) Nature , vol.403 , pp. 646-649
    • Radajewski, S.1    Ineson, P.2    Parekh, N.R.3    Murrell, J.C.4
  • 140
    • 0034636417 scopus 로고    scopus 로고
    • Detection and classification of atmospheric methane oxidizing bacteria in soil
    • Bull ID, Parekh NR, Hall GH, Ineson P, Evershed RP. Detection and classification of atmospheric methane oxidizing bacteria in soil. Nature 2000; 405: 175-178.
    • (2000) Nature , vol.405 , pp. 175-178
    • Bull, I.D.1    Parekh, N.R.2    Hall, G.H.3    Ineson, P.4    Evershed, R.P.5
  • 141
    • 0031831891 scopus 로고    scopus 로고
    • Microbiological and molecular methods for monitoring microbial inoculants and their effects in the soil environment
    • Van Elsas JD, Duarte GF, Rosado AS, Smalla K. Microbiological and molecular methods for monitoring microbial inoculants and their effects in the soil environment. J Microbiol Methods 1998; 32: 133-154.
    • (1998) J Microbiol Methods , vol.32 , pp. 133-154
    • Van Elsas, J.D.1    Duarte, G.F.2    Rosado, A.S.3    Smalla, K.4
  • 142
    • 0028091275 scopus 로고
    • The regulation of ribosomal RNA synthesis and bacterial cell growth
    • Wagner R. The regulation of ribosomal RNA synthesis and bacterial cell growth. Arch Microbiol 1994; 161: 100-106.
    • (1994) Arch Microbiol , vol.161 , pp. 100-106
    • Wagner, R.1
  • 143
    • 0141873129 scopus 로고    scopus 로고
    • Heterotrophic bacteria: The cultivation approach
    • Hall GS, Lasserre P, Hawksworth DL, eds, Wallingford, Oxon, UK: CAB International
    • Staley JT. Heterotrophic bacteria: the cultivation approach. In: Hall GS, Lasserre P, Hawksworth DL, eds, Methods for the Examination of Organismal Diversity in Soils and Sediments, Wallingford, Oxon, UK: CAB International, 1996; 1-10.
    • (1996) Methods for the Examination of Organismal Diversity in Soils and Sediments , pp. 1-10
    • Staley, J.T.1


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