Expression cloning and biochemical characterization of a Rhizobium leguminosarum lipid A 1-phosphatase

Journal of Biological Chemistry

Volumn 278, Issue 41, 2003, Pages 39269-39279

  Karbarz, Mark J ^a   Kalb, Suzanne R ^b   Cotter, Robert J ^b   Raetz, Christian R H ^a  

^a DUKE UNIVERSITY MEDICAL CENTER   (United States)

^b JOHNS HOPKINS UNIVERSITY SCHOOL OF MEDICINE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CLONING; DNA; ENZYME KINETICS; ESCHERICHIA COLI; LASER APPLICATIONS; MOLECULAR STRUCTURE; NITROGEN FIXATION;

PATHOGENS;

BIOCHEMISTRY;

BACTERIAL DNA; LIPID; LIPID A; LIPID A 1 PHOSPHATASE; PHOSPHATASE; PHOSPHATE; POLYMYXIN B; UNCLASSIFIED DRUG;

ANTIBIOTIC SENSITIVITY; ARTICLE; BACTERIAL MEMBRANE; BRUCELLA MELITENSIS; CHEMICAL STRUCTURE; CONTROLLED STUDY; COSMID; DNA SEQUENCE; ENDOSYMBIONT; ENZYME ACTIVITY; ENZYME SUBSTRATE; ESCHERICHIA COLI; FRANCISELLA TULARENSIS; GENE EXPRESSION; GRAM NEGATIVE BACTERIUM; LEGIONELLA PNEUMOPHILA; MATRIX ASSISTED LASER DESORPTION IONIZATION TIME OF FLIGHT MASS SPECTROMETRY; NITROGEN FIXATION; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROMOTER REGION; RADIOCHEMISTRY; RHIZOBIUM ETLI; RHIZOBIUM LEGUMINOSARUM; SEQUENCE HOMOLOGY; SINORHIZOBIUM MELILOTI;

AMINO ACID SEQUENCE; BASE SEQUENCE; CARBOHYDRATE SEQUENCE; CLONING, MOLECULAR; COSMIDS; DNA, BACTERIAL; GENES, BACTERIAL; LIPID A; MOLECULAR SEQUENCE DATA; MOLECULAR STRUCTURE; PHOSPHORIC MONOESTER HYDROLASES; RECOMBINANT PROTEINS; RHIZOBIUM LEGUMINOSARUM; SINORHIZOBIUM MELILOTI; SPECTROMETRY, MASS, MATRIX-ASSISTED LASER DESORPTION-IONIZATION;

BACTERIA (MICROORGANISMS); BRUCELLA; BRUCELLA MELITENSIS; ESCHERICHIA COLI; FRANCISELLA TULARENSIS; LEGIONELLA; LEGIONELLA PNEUMOPHILA; NEGIBACTERIA; RHIZOBIUM; RHIZOBIUM ETLI; RHIZOBIUM LEGUMINOSARUM; SINORHIZOBIUM; SINORHIZOBIUM MELILOTI 1021;

EID: 0141891335     PISSN: 00219258     EISSN: None     Source Type: Journal    
DOI: 10.1074/jbc.M305830200     Document Type: Article

References (115)

1. Raetz, C. R. H. (1990) Annu. Rev. Biochem. 59, 129-170
2. Raetz, C. R. H. (1996) in Escherichia coli and Salmonella: Cellular and Molecular Biology (Neidhardt, F. C., ed) Vol. 1, 2nd Ed., pp. 1035-1063, American Society for Microbiology, Washington, D. C.
3. Raetz, C. R. H., and Whitfield, C. (2002) Annu. Rev. Biochem. 71, 635-700
4. Brade, H., Opal, S. M., Vogel, S. N., and Morrison, D. C. (eds) (1999) Endotoxin in Health and Disease, Marcel Dekker, Inc., New York
5. Nikaido, H. (1996) in Escherichia coli and Salmonella: Cellular and Molecular Biology (Neidhardt, F. C., ed) Vol. 1, 2nd Ed., pp. 29-47, American Society for Microbiology, Washington, D. C.
6. Vaara, M. (1993) Antimicrob. Agents Chemother. 37, 2255-2260
7. Roantree, R. J. (1967)Annu. Rev. Microbiol. 21, 443-466
8. Galloway, S. M., and Raetz, C. R. H. (1990) J. Biol. Chem. 265, 6394-6402
9. Onishi, H. R., Pelak, B. A., Gerckens, L. S., Silver, L. L., Kahan, F. M., Chen, M. H., Patchett, A. A., Galloway, S. M., Hyland, S. A., Anderson, M. S., and Raetz, C. R. H. (1996) Science 274, 980-982
10. Rietschel, E. T., Kirikae, T., Schade, F. U., Mamat, U., Schmidt, G., Loppnow, H., Ulmer, A. J., Zähringer, U., Seydel, U., Di Padova, F., Schreler, M., and Brade, H. (1994) FASEB J. 8, 217-225
11. Parillo, J. E. (1993) N. Engl. J. Med. 328, 1471-1477
12. Aderem, A., and Ulevitch, R. J. (2000) Nature 406, 782-787
13. Zähringer, U., Lindner, B., and Rietschel, E. T. (1999) in Endotoxin in Health and Disease (Brade, H., Opal, S. M., Vogel, S. N., and Morrison, D. C., eds) pp. 93-114, Marcel Dekker, Inc., New York
14. Bhat, U. R., Forsberg, L. S., and Carlson, R. W. (1994) J. Biol. Chem. 269, 14402-14410
15. Forsberg, L. S., and Carlson, R. W. (1998) J. Biol. Chem. 273, 2747-2757
16. Que, N. L. S., Lin, S., Cotter, R. J., and Raetz, C. R. H. (2000) J. Biol. Chem. 275, 26006-26016
17. Que, N. L. S., Ribeiro, A. A., and Raetz, C. R. H. (2000) J. Biol. Chem. 275, 26017-26027
18. Qureshi, N., Takayama, K., Mascagni, P., Honovich, J., Wong, R., and Cotter, R. J. (1988) J. Biol. Chem. 263, 11971-11976
19. Brozek, K. A., and Raetz, C. R. H. (1990) J. Biol. Chem. 265, 15410-15417
20. Clementz, T., Bednarski, J. J., and Raetz, C. R. H. (1996) J. Biol. Chem. 271, 12095-12102
21. Clementz, T., Zhou, Z., and Raetz, C. R. H. (1997) J. Biol. Chem. 272, 10353-10360
22. Brozek, K. A., Carlson, R. W., and Raetz, C. R. H. (1996) J. Biol. Chem. 271, 32126-32136
23. Loppnow, H., Brade, H., Dürrbaum, I., Dinarello, C. A., Kusumoto, S., Rietschel, E. T., and Flad, H. D. (1989) J. Immunol. 142, 3229-3238
24. Golenbock, D. T., Hampton, R. Y., Qureshi, N., Takayama, K., and Raetz, C. R. H. (1991) J. Biol. Chem. 266, 19490-19498
25. Lien, E., Means, T. K., Heine, H., Yoshimura, A., Kusumoto, S., Fukase, K., Fenton, M. J., Oikawa, M., Qureshi, N., Monks, B., Finberg, R. W., Ingalls, R. R., and Golenbock, D. T. (2000) J. Clin. Invest. 105, 497-504
26. Poltorak, A., Ricciardi-Castagnoli, P., Citterio, S., and Beutler, B. (2000) Proc. Natl. Acad. Sci. U. S. A. 97, 2163-2167
27. Persing, D. H., Coler, R. N., Lacy, M. J., Johnson, D. A., Baldridge, J. R., Hershberg, R. M., and Reed, S. G. (2002) Trends Microbiol. 10, S32-37
28. Poltorak, A., He, X., Smirnova, I., Liu, M. Y., Huffel, C. V., Du, X., Birdwell, D., Alejos, E., Silva, M., Galanos, C., Freudenberg, M., Ricciardi-Castagnoli, P., Layton, B., and Beutler, B. (1998) Science 282, 2085-2088
29. Hoshino, K., Takeuchi, O., Kawai, T., Sanjo, H., Ogawa, T., Takeda, Y., Takeda, K., and Akira, S. (1999) J. Immunol. 162, 3749-3752
30. Lien, E., and Ingalls, R. R. (2002) Crit. Care Med. 30, S1-S11
31. Janeway, C. A., Jr., and Medzhitov, R. (2002) Annu. Rev. Immunol. 20, 197-216
32. Takeda, K., and Akira, S. (2003) Cell. Microbiol, 5, 143-153
33. Shimazu, R., Akashi, S., Ogata, H., Nagai, Y., Fukudome, K., Miyake, K., and Kimoto, M. (1999) J. Exp. Med. 189, 1777-1782
34. Endre, G., Kereszt, A., Kevei, Z., Mihacea, S., Kalo, P., and Kiss, G. B. (2002) Nature 417, 962-966
35. Stracke, S., Kistner, C., Yoshida, S., Mulder, L., Sato, S., Kaneko, T., Tabata, S., Sandal, N., Stougaard, J., Szczyglowski, K., and Parniske, M. (2002) Nature 417, 959-962
36. Spaink, H. P. (2002) Nature 417, 910-911
37. Price, N. P. J., Kelly, T. M., Raetz, C. R. H., and Carlson, R. W. (1994) J. Bacteriol. 176, 4646-4655
38. Price, N. J. P., Jeyaretnam, B., Carlson, R. W., Kadrmas, J. L., Raetz, C. R. H., and Brozek, K. A. (1995) Proc. Natl. Acad. Sci. U. S. A. 92, 7352-7356
39. Brozek, K. A., Kadrmas, J. L., and Raetz, C. R. H. (1996) J. Biol. Chem. 271, 32112-32118
40. Basu, S. S., Karbarz, M. J., and Raetz, C. R. H. (2002) J. Biol. Chem. 277, 28959-28971
41. Kadrmas, J. L., Brozek, K. A., and Raetz, C. R. H. (1996) J. Biol. Chem. 271, 32119-32125
42. Kadrmas, J. L., Allaway, D., Studholme, R. E., Sullivan, J. T., Ronson, C. W., Poole, P. S., and Raetz, C. R. H. (1998) J. Biol. Chem. 273, 26432-26440
43. Que-Gewirth, N. L. S., Lin, S., Cotter, R. J., and Raetz, C. R. H. (2003) J. Biol. Chem. 278, 12109-12119
44. Que-Gewirth, N. L. S., Karbarz, M. J., Kalb, S. R., Cotter, R. J., and Raetz, C. R. H. (2003) J. Biol. Chem. 278, 12120-12129
45. Ronson, C. W., Astwood, P. M., and Downie, J. A. (1984) J. Bacteriol. 160, 903-909
46. Cava, J. R., Elias, P. M., Turowski, D. A., and Noel, K. D. (1989) J. Bacteriol. 171, 8-15
47. Noel, K. D., Sanchez, A., Fernandez, L., Leemans, J., and Cevallos, M. A. (1984) J. Bacteriol. 158, 148-155
48. Johnston, A. W., and Beringer, J. E. (1975) J. Gen. Microbiol. 87, 343-350
49. Galibert, F., Finan, T. M., Long, S. R., Puhler, A., Abola, P., Ampe, F., Barloy-Hubler, F., Barnett, M. J., Becker, A., Boistard, P., Bothe, G., Boutry, M., Bowser, L., Buhrmester, J., Cadieu, E., Capela, D., Chain, P., Cowie, A., Davis, R. W., Dreano, S., Federspiel, N. A., Fisher, R. F., Gloux, S., Godrie, T., Goffeau, A., Golding, B., Gouzy, J., Gurjal, M., Hernandez-Lucas, I., Hong, A., Huizar, L., Hyman, R. W., Jones, T., Kahn, D., Kahn, M. L., Kalman, S., Keating, D. H., Kiss, E., Komp, C., Lelaure, V., Masuy, D., Palm, C., Peck, M. C., Pohl, T. M., Portetelle, D., Purnelle, B., Ramsperger, U., Surzycki, R., Thebault, P., Vandenbol, M., Vorholter, F. J., Weidner, S., Wells, D. H., Wong, K., Yeh, K. C., and Batut, J. (2001) Science 293, 668-672
50. Miller, J. R. (1972) Experiments in Molecular Genetics, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY
51. Smith, P. K., Krohn, R. I., Hermanson, G. T., Mallia, A. K., Gartner, F. H., Provenzano, M. D., Fujimoto, E. K., Goeke, N. M., Olson, B. J., and Klenk, D. C. (1985) Anal. Biochem. 150, 76-85
52. Garrett, T. A., Kadrmas, J. L., and Raetz, C. R. H. (1997) J. Biol. Chem. 272, 21855-21864
53. Basu, S. S., York, J. D., and Raetz, C. R. H. (1999) J. Biol. Chem. 274, 11139-11149
54. Belunis, C. J., and Raetz, C. R. H. (1992) J. Biol. Chem. 267, 9988-9997
55. Brozek, K. A., Hosaka, K., Robertson, A. D., and Raetz, C. R. H. (1989) J. Biol. Chem. 264, 6956-6966
56. Nishijima, M., and Raetz, C. R. H. (1979) J. Biol. Chem. 254, 7837-7844
57. Nishijima, M., Bulawa, C. E., and Raetz, C. R. H. (1981) J. Bacteriol. 145, 113-121
58. Takayama, K., Qureshi, N., Mascagni, P., Nashed, M. A., Anderson, L., and Raetz, C. R. H. (1983) J. Biol. Chem. 258, 7379-7385
59. Radika, K., and Raetz, C. R. H. (1988) J. Biol. Chem. 263, 14859-14867
60. Friedman, A. M., Long, S. R., Brown, S. E., Buikema, W. J., and Ausubel, F. M. (1982) Gene (Amst.) 18, 289-296
61. Wood, W. (1966) J. Mol. Biol. 16, 118-133
62. Glazebrook, J., and Walker, G. C. (1991) Methods Enzymol. 204, 398-418
63. Finan, T. M., Kunkel, B., De Vos, G. F., and Signer, E. R. (1986) J. Bacteriol. 167, 66-72
64. Ausubel, F. M., Brent, R., Kingston, R. E., Moore, D. D., Seidman, J. G., Smith, J. A., and Struhl, K. (eds) (1989) Current Protocols in Molecular Biology, John Wiley & Sons, New York
65. Ditta, G., Stanfield, S., Corbin, D., and Helinski, D. R. (1980) Proc. Natl. Acad. Sci. U. S. A. 77, 7347-7351
66. von Jagow, G., and Schagger, H. (eds) (1994) A Practical Guide to Membrane Protein Purification., Academic Press, New York
67. Bligh, E. G., and Dyer, J. J. (1959) Can. J. Biochem. Physiol. 37, 911-917
68. Raetz, C. R. H., and Kennedy, E. P. (1973) J. Biol. Chem. 248, 1098-1105
69. Raetz, C. R. H., Purcell, S., Meyer, M. V., Qureshi, N., and Takayama, K. (1985) J. Biol. Chem. 260, 16080-16088
70. Gudlavalleti, S. K., and Forsberg, L. S. (2003) J. Biol. Chem. 278, 3957-3968
71. Kanipes, M. I., Kalb, S. R., Cotter, R. J., Hozbor, D. F., Lagares, A., and Raetz, C. R. H. (2003) J. Biol. Chem. 278, 16365-16371
72. Wheeler, D. L., Church, D. M., Federhen, S., Lash, A. E., Madden, T. L., Pontius, J. U., Schuler, G. D., Schriml, L. M., Sequeira, E., Tatusova, T. A., and Wagner, L. (2003) Nucleic Acids Res. 31, 28-33
73. Stukey, J., and Carman, G. M. (1997) Protein Sci. 6, 469-472
74. Urbanik-Sypniewska, T., Choma, A., Kutkowska, J., Kaminska, T., Kandefer-Szerszen, M., Russa, R., and Dolecka, J. (2000) Immunobiology 202, 408-420
75. Vinogradov, E., Perry, M. B., and Conlan, J. W. (2002) Eur. J. Biochem. 269, 6112-6118
76. Nikaido, H., and Vaara, M. (1985) Microbiol. Rev. 49, 1-32
77. Plotz, B. M., Lindner, B., Stetter, K. O., and Holst, O. (2000) J. Biol. Chem. 275, 11222-11228
78. Moran, A. P., Lindner, B., and Walsh, E. J. (1997) J. Bacteriol. 179, 6453-6463
79. Ogawa, T. (1993) FEBS Lett. 332, 197-201
80. Icho, T., and Raetz, C. R. H. (1983) J. Bacteriol. 153, 722-730
81. Icho, T. (1988) J. Bacteriol. 170, 5117-5124
82. Funk, C. R., Zimniak, L., and Dowhan, W. (1992) J. Bacteriol. 174, 205-213
83. Park, J. T. (1987) in Escherichia coli and Salmonella typhimurium (Neidhardt, F., ed) Vol. 1, pp. 663-671, American Society for Microbiology, Washington, D.C.
84. Bugg, T. D., and Brandish, P. E. (1994) FEMS Microbiol. Lett. 119, 255-262
85. Carman, G. M. (1997) Biochim. Biophys. Acta 1348, 45-55
86. Altschul, S. F., Madden, T. L., Schaffer, A. A., Zhang, J., Zhang, Z., Miller, W., and Lipman, D. J. (1997) Nucleic Acids Res. 25, 3389-3402
87. Goodner, B., Hinkle, G., Gattung, S., Miller, N., Blanchard, M., Qurollo, B., Goldman, B. S., Cao, Y., Askenazi, M., Halling, C., Mullin, L., Houmiel, K., Gordon, J., Vaudin, M., Iartchouk, O., Epp, A., Liu, F., Wollam, C., Allinger, M., Doughty, D., Scott, C., Lappas, C., Markelz, B., Flanagan, C., Crowell, C., Gurson, J., Lomo, C., Sear, C., Strub, G., Cielo, C., and Slater, S. (2001) Science 294, 2323-2328
88. Wood, D. W., Setubal, J. C., Kaul, R., Monks, D. E., Kitajima, J. P., Okura, V. K., Zhou, Y., Chen, L., Wood, G. E., Almeida, N. F., Jr., Woo, L., Chen, Y., Paulsen, I. T., Eisen, J. A., Karp, P. D., Bovee, D., Sr., Chapman, P., Clendenning, J., Deatherage, G., Gillet, W., Grant, C., Kutyavin, T., Levy, R., Li, M. J., McClelland, E., Palmieri, A., Raymond, C., Rouse, G., Saenphimmachak, C., Wu, Z., Romero, P., Gordon, D., Zhang, S., Yoo, H., Tao, Y., Biddle, P., Jung, M., Krespan, W., Perry, M., Gordon-Kamm, B., Liao, L., Kim, S., Hendrick, C., Zhao, Z. Y., Dolan, M., Chumley, F., Tingey, S. V., Tomb, J. F., Gordon, M. P., Olson, M. V., and Nester, E. W. (2001) Science 294, 2317-2323
89. Kaneko, T., Nakamura, Y., Sato, S., Asamizu, E., Kato, T., Sasamoto, S., Watanabe, A., Idesawa, K., Ishikawa, A., Kawashima, K., Kimura, T., Kishida, Y., Kiyokawa, C., Kohara, M., Matsumoto, M., Matsuno, A., Mochizuki, Y., Nakayama, S., Nakazaki, N., Shimpo, S., Sugimoto, M., Takeuchi, C., Yamada, M., and Tabata, S. (2000) DNA Res. 7, 331-338
90. Galperin, M. Y., Nikolskaya, A. N., and Koonin, E. V. (2001) FEMS Microbiol. Lett. 203, 11-21
91. VandenBosch, K. A., Brewin, N. J., and Kannenberg, E. L. (1989) J. Bacteriol. 171, 4537-4542
92. Sindhu, S. S., Brewin, N. J., and Kannenberg, E. L. (1990) J. Bacteriol. 172, 1804-1813
93. Kannenberg, E. L., Perotto, S., Bianciotto, V., Rathbun, E. A., and Brewin, N. J. (1994) J. Bacteriol. 176, 2021-2032
94. Kannenberg, E. L., and Brewin, N. J. (1994) Trends Microbiol. 2, 277-283
95. Kannenberg, E. L., and Brewin, N. J. (1989) J. Bacteriol. 171, 4543-4548
96. Kannenberg, E. L., Rathbun, E. A., and Brewin, N. J. (1992) Mol. Microbiol. 6, 2477-2487
97. Guo, L., Lim, K. B., Gunn, J. S., Bainbridge, B., Darveau, R. P., Hackett, M., and Miller, S. I. (1997) Science 276, 250-253
98. Guo, L., Lim, K. B., Poduje, C. M., Daniel, M., Gunn, J. S., Hackett, M., and Miller, S. L. (1998) Cell 95, 189-198
99. Gunn, J. S., Lim, K. B., Krueger, J., Kim, K., Guo, L., Hackett, M., and Miller, S. I. (1998) Mol. Microbiol. 27, 1171-1182
100. Zhou, Z., Lin, S., Cotter, R. J., and Raetz, C. R. H. (1999) J. Biol. Chem. 274, 18503-18514
101. Bishop, R. E., Gibbons, H. S., Guina, T., Trent, M. S., Miller, S. I., and Raetz, C. R. H. (2000) EMBO J. 19, 5071-5080
102. Zhou, Z., Ribeiro, A. A., Lin, S., Cotter, R. J., Miller, S. I., and Raetz, C. R. H. (2001) J. Biol. Chem. 276, 43111-43121
103. Groisman, E. A. (2001) J. Bacteriol. 183, 1835-1842
104. Ohl, M. E., and Miller, S. I. (2001) Annu. Rev. Med. 52, 259-274
105. Medzhitov, R., and Janeway, C. A., Jr. (1998) Curr. Opin. Immunol. 10, 12-15
106. Borregaard, N., Elsbach, P., Ganz, T., Garred, P., and Svejgaard, A. (2000) Immunol. Today 21, 68-70
107. Caaveiro, J. M., Molina, A., Gonzalez-Manas, J. M., Rodriguez-Palenzuela, P., Garcia-Olmedo, F., and Gonii, F. M. (1997) FEBS Lett. 410, 338-342
108. Boman, H. G. (1998) Scand. J. Immunol. 48, 15-25
109. Vandenplas, M. L., Carlson, R. W., Jeyaretnam, B. S., McNeill, B., Barton, M. H., Norton, N., Murray, T. F., and Moore, J. N. (2002) J. Biol. Chem. 277, 41811-41816
110. Qureshi, N., Takayama, K., and Ribi, E. (1982) J. Biol. Chem. 257, 11808-11815
111. Kanipes, M. I., Lin, S., Cotter, R. J., and Raetz, C. R. H. (2001) J. Biol. Chem. 276, 1156-1163
112. Kanipes, M. I., Ribeiro, A. A., Lin, S., Cotter, R. J., and Raetz, C. R. H. (2003) J. Biol. Chem. 278, 16356-16364
113. Brabetz, W., Muller-Loennies, S., Holst, O., and Brade, H. (1997) Eur. J. Biochem. 247, 716-724
114. Basu, S. S., White, K. A., Que, N. L., and Raetz, C. R. H. (1999) J. Biol. Chem. 274, 11150-11158
115. Babinski, K. J., Ribeiro, A. A., and Raetz, C. R. H. (2002) J. Biol. Chem. 277, 25937-25946