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Volumn 35, Issue 6, 2003, Pages 771-786

The transcriptional response of Arabidopsis to genotoxic stress - A high-density colony array study (HDCA)

Author keywords

Arabidopsis; Colony array; Genotoxin; Real time PCR; Transcriptome

Indexed keywords

CLONING; DNA; PROTEINS; STRESS ANALYSIS;

EID: 0141790789     PISSN: 09607412     EISSN: None     Source Type: Journal    
DOI: 10.1046/j.1365-313X.2003.01847.x     Document Type: Article
Times cited : (89)

References (53)
  • 1
    • 0032845809 scopus 로고    scopus 로고
    • Four mismatch repair paralogues coexist in Arabidopsis thaliana: AtMSH2, AtMSH3, AtMSH6-1 and AtMSH6-2
    • Ade, J., Belzile, F., Philippe, H. and Doutriaux, M.P. (1999) Four mismatch repair paralogues coexist in Arabidopsis thaliana: AtMSH2, AtMSH3, AtMSH6-1 and AtMSH6-2. Mol. Gen. Genet. 262, 239-249.
    • (1999) Mol. Gen. Genet. , vol.262 , pp. 239-249
    • Ade, J.1    Belzile, F.2    Philippe, H.3    Doutriaux, M.P.4
  • 2
    • 0036007675 scopus 로고    scopus 로고
    • DNA microarrays for functional plant genomics
    • Aharoni, A. and Vorst, O. (2001) DNA microarrays for functional plant genomics. Plant Mol. Biol. 48, 99-118.
    • (2001) Plant Mol. Biol. , vol.48 , pp. 99-118
    • Aharoni, A.1    Vorst, O.2
  • 3
    • 0037172948 scopus 로고    scopus 로고
    • Transcriptional response of Saccharomyces cerevisiae to DNA-damaging agents does not identify the genes that protect against these agents
    • Birrell, G.W., Brown, J.A., Wu, H.I., Giaever, G., Chu, A.M., Davis, R.W. and Brown, J.M. (2002) Transcriptional response of Saccharomyces cerevisiae to DNA-damaging agents does not identify the genes that protect against these agents. Proc. Natl. Acad. Sci. USA, 99, 8778-8783.
    • (2002) Proc. Natl. Acad. Sci. USA , vol.99 , pp. 8778-8783
    • Birrell, G.W.1    Brown, J.A.2    Wu, H.I.3    Giaever, G.4    Chu, A.M.5    Davis, R.W.6    Brown, J.M.7
  • 4
    • 0033788517 scopus 로고    scopus 로고
    • Expression of cell cycle regulatory genes and morphological alterations in response to salt stress in Arabidopsis thaliana
    • Burssens, S., Himanen, K., van de Cotte, B., Beeckman, T., Van Montagu, M., Inze, D. and Verbruggen, N. (2000) Expression of cell cycle regulatory genes and morphological alterations in response to salt stress in Arabidopsis thaliana. Planta, 211, 632-640.
    • (2000) Planta , vol.211 , pp. 632-640
    • Burssens, S.1    Himanen, K.2    Van De Cotte, B.3    Beeckman, T.4    Van Montagu, M.5    Inze, D.6    Verbruggen, N.7
  • 5
    • 0033764384 scopus 로고    scopus 로고
    • Cell cycle regulation of the tobacco ribonucleotide reductase small subunit gene is mediated by E2F-like elements
    • Chaboute, E., Clement, B., Sekine, M., Philipps, G. and Chaubet-Gigot, N. (2000) Cell cycle regulation of the tobacco ribonucleotide reductase small subunit gene is mediated by E2F-like elements. Plant Cell, 12, 1987-2000.
    • (2000) Plant Cell , vol.12 , pp. 1987-2000
    • Chaboute, E.1    Clement, B.2    Sekine, M.3    Philipps, G.4    Chaubet-Gigot, N.5
  • 6
    • 0036010572 scopus 로고    scopus 로고
    • Expression profile matrix of Arabidopsis transcription factor genes suggests their putative functions in response to environmental stresses
    • Chen, W., Provart, N.J., Glazebrook, J. et al. (2002) Expression profile matrix of Arabidopsis transcription factor genes suggests their putative functions in response to environmental stresses. Plant Cell, 14, 559-574.
    • (2002) Plant Cell , vol.14 , pp. 559-574
    • Chen, W.1    Provart, N.J.2    Glazebrook, J.3
  • 7
    • 0034813646 scopus 로고    scopus 로고
    • Regulation of the Arabidopsis transcriptome by oxidative stress
    • Desikan, R., A.-H.-Mackerness, S., Hancock, J.T. and Neill, S.J. (2001) Regulation of the Arabidopsis transcriptome by oxidative stress. Plant Physiol. 127, 159-172.
    • (2001) Plant Physiol. , vol.127 , pp. 159-172
    • Desikan, R.1    A-H-Mackerness, S.2    Hancock, J.T.3    Neill, S.J.4
  • 8
    • 0033814516 scopus 로고    scopus 로고
    • Molecular cloning and developmental expression of AtGR1, a new growth-related Arabidopsis gene strongly induced by ionizing radiation
    • Deveaux, Y., Alonso, B., Pierrugues, O., Godon, C. and Kazmaier, M. (2000) Molecular cloning and developmental expression of AtGR1, a new growth-related Arabidopsis gene strongly induced by ionizing radiation. Radiat. Res. 154, 355-364.
    • (2000) Radiat. Res. , vol.154 , pp. 355-364
    • Deveaux, Y.1    Alonso, B.2    Pierrugues, O.3    Godon, C.4    Kazmaier, M.5
  • 10
    • 0031933138 scopus 로고    scopus 로고
    • Isolation and characterisation of the RAD51 and DMC1 homologs from Arabidopsis thaliana
    • Doutriaux, M.P., Couteau, F., Bergounioux, C. and White, C. (1998) Isolation and characterisation of the RAD51 and DMC1 homologs from Arabidopsis thaliana. Mol. Gen. Genet. 257, 283-291.
    • (1998) Mol. Gen. Genet. , vol.257 , pp. 283-291
    • Doutriaux, M.P.1    Couteau, F.2    Bergounioux, C.3    White, C.4
  • 11
    • 0026582672 scopus 로고
    • Ribonucleotide reductase: Regulation, regulation, regulation
    • Elledge, S.J., Zhou, Z. and Allen, J.B. (1992) Ribonucleotide reductase: regulation, regulation, regulation. Trends Biochem. Sci. 17, 119-123.
    • (1992) Trends Biochem. Sci. , vol.17 , pp. 119-123
    • Elledge, S.J.1    Zhou, Z.2    Allen, J.B.3
  • 12
    • 0033152697 scopus 로고    scopus 로고
    • Structural and functional analysis of the six regulatory particle triple-A ATPase subunits from the Arabidopsis 26S proteosome
    • Fu, H., Doelling, J.H., Rubin, D.M. and Vierstra, R.D. (1999) Structural and functional analysis of the six regulatory particle triple-A ATPase subunits from the Arabidopsis 26S proteosome. Plant J. 18, 529-539.
    • (1999) Plant J. , vol.18 , pp. 529-539
    • Fu, H.1    Doelling, J.H.2    Rubin, D.M.3    Vierstra, R.D.4
  • 13
    • 0034002935 scopus 로고    scopus 로고
    • AtRAD1, a plant homologue of human and yeast nucleotide excision repair endonucleases, is involved in dark repair of UV damages and recombination
    • Gallego, F., Fleck, O., Li, A., Wyrzykowska, J. and Tinland, B. (2000) AtRAD1, a plant homologue of human and yeast nucleotide excision repair endonucleases, is involved in dark repair of UV damages and recombination. Plant J. 21, 507-518.
    • (2000) Plant J. , vol.21 , pp. 507-518
    • Gallego, F.1    Fleck, O.2    Li, A.3    Wyrzykowska, J.4    Tinland, B.5
  • 14
    • 0037256448 scopus 로고    scopus 로고
    • AtATM is essential for meiosis and the somatic response to DNA damage in plants
    • Garcia, V., Bruchet, H., Camescasse, D., Granier, F., Bouchez, D. and Tissier, A. (2003) AtATM is essential for meiosis and the somatic response to DNA damage in plants. Plant Cell, 15, 119-132.
    • (2003) Plant Cell , vol.15 , pp. 119-132
    • Garcia, V.1    Bruchet, H.2    Camescasse, D.3    Granier, F.4    Bouchez, D.5    Tissier, A.6
  • 15
    • 0033180448 scopus 로고    scopus 로고
    • Genes controlling expression of defense responses in Arabidopsis
    • Glazebrook, J. (1999) Genes controlling expression of defense responses in Arabidopsis. Curr. Opin. Plant Biol. 2, 280-286.
    • (1999) Curr. Opin. Plant Biol. , vol.2 , pp. 280-286
    • Glazebrook, J.1
  • 16
    • 0029684610 scopus 로고    scopus 로고
    • Regulation of synthesis of ribonucleotide reductase and relationship to DNA replication in various systems
    • Greenberg, G.R. and Hilfinger, J.M. (1996) Regulation of synthesis of ribonucleotide reductase and relationship to DNA replication in various systems. Prog. Nucl. Acid Res. Mol. Biol. 53, 345-395.
    • (1996) Prog. Nucl. Acid Res. Mol. Biol. , vol.53 , pp. 345-395
    • Greenberg, G.R.1    Hilfinger, J.M.2
  • 18
    • 0035854029 scopus 로고    scopus 로고
    • Molecular characterization of homologues of both subunits A (SPO11) and B of the archaebacterial topoisomerase 6 in plants
    • Hartung, F. and Puchta, H. (2001) Molecular characterization of homologues of both subunits A (SPO11) and B of the archaebacterial topoisomerase 6 in plants. Gene, 271, 81-86.
    • (2001) Gene , vol.271 , pp. 81-86
    • Hartung, F.1    Puchta, H.2
  • 19
    • 0034326274 scopus 로고    scopus 로고
    • Molecular characterization of RecQ homologues in Arabidopsis thaliana
    • Hartung, F., Plchova, F. and Puchta, H. (2000) Molecular characterization of RecQ homologues in Arabidopsis thaliana. Nucl. Acids Res. 28, 4275-4282.
    • (2000) Nucl. Acids Res. , vol.28 , pp. 4275-4282
    • Hartung, F.1    Plchova, F.2    Puchta, H.3
  • 21
    • 0037440693 scopus 로고    scopus 로고
    • Characterization of Arabidopsis thaliana ortholog of the human breast cancer susceptibility gene 1: AtBRCA1, strongly induced by gamma rays
    • Lafarge, S. and Montane, M.H. (2003) Characterization of Arabidopsis thaliana ortholog of the human breast cancer susceptibility gene 1: AtBRCA1, strongly induced by gamma rays. Nucl. Acids Res. 31, 1148-1155.
    • (2003) Nucl. Acids Res. , vol.31 , pp. 1148-1155
    • Lafarge, S.1    Montane, M.H.2
  • 24
    • 0034000524 scopus 로고    scopus 로고
    • Repair of UV damage in plants by nucleotide excision repair: Arabidopsis UVH1 DNA repair gene is a homolog of Saccharomyces cerevisiae Rad1
    • Liu, Z., Hossain, G.S., Islas-Osuna, M.A., Mitchell, D.L. and Mount, D.W. (2000) Repair of UV damage in plants by nucleotide excision repair: Arabidopsis UVH1 DNA repair gene is a homolog of Saccharomyces cerevisiae Rad1. Plant J. 21, 519-528.
    • (2000) Plant J. , vol.21 , pp. 519-528
    • Liu, Z.1    Hossain, G.S.2    Islas-Osuna, M.A.3    Mitchell, D.L.4    Mount, D.W.5
  • 25
    • 0034659898 scopus 로고    scopus 로고
    • Genomics, gene expression and DNA arrays
    • Lockhart, D.J. and Winzeler, E.A. (2000) Genomics, gene expression and DNA arrays. Nature, 405, 827-836.
    • (2000) Nature , vol.405 , pp. 827-836
    • Lockhart, D.J.1    Winzeler, E.A.2
  • 27
    • 0035999895 scopus 로고    scopus 로고
    • Synchronous Arabidopsis suspension cultures for analysis of cell-cycle gene activity
    • Menges, M. and Murray, J.A. (2002) Synchronous Arabidopsis suspension cultures for analysis of cell-cycle gene activity. Plant J. 30, 203-212.
    • (2002) Plant J. , vol.30 , pp. 203-212
    • Menges, M.1    Murray, J.A.2
  • 28
    • 0036829989 scopus 로고    scopus 로고
    • Cell cycle-regulated gene expression in Arabidopsis
    • Menges, M., Hennig, L., Gruissem, W. and Murray, J.A. (2002) Cell cycle-regulated gene expression in Arabidopsis. J. Biol. Chem. 277, 41987-42002.
    • (2002) J. Biol. Chem. , vol.277 , pp. 41987-42002
    • Menges, M.1    Hennig, L.2    Gruissem, W.3    Murray, J.A.4
  • 29
    • 0035958280 scopus 로고    scopus 로고
    • DNA damage and repair in Arabidopsis thaliana as measured by the comet assay after treatment with different classes of genotoxins
    • Menke, M., Chen, I., Angelis, K.J. and Schubert, I. (2001) DNA damage and repair in Arabidopsis thaliana as measured by the comet assay after treatment with different classes of genotoxins. Mutat. Res. 493, 87-93.
    • (2001) Mutat. Res. , vol.493 , pp. 87-93
    • Menke, M.1    Chen, I.2    Angelis, K.J.3    Schubert, I.4
  • 30
    • 0035915413 scopus 로고    scopus 로고
    • Transcriptional induction of repair genes during slowing of replication in irradiated Sacchromyces cerevisiae
    • Mercier, G., Denis, Y., Marc, P., Picard, L and Dutreix, M. (2001) Transcriptional induction of repair genes during slowing of replication in irradiated Sacchromyces cerevisiae. Mutat. Res. 487, 157-172.
    • (2001) Mutat. Res. , vol.487 , pp. 157-172
    • Mercier, G.1    Denis, Y.2    Marc, P.3    Picard, L.4    Dutreix, M.5
  • 31
    • 0037187201 scopus 로고    scopus 로고
    • DNA repair capacity after γ-irradition and expression profiles of DNA repair genes in resting and proliferating human peripheral blood lymphocytes
    • Meyer, C., Popanda, O., Zelezny, O., von Brevern, M., Bach, A., Bartsch, H. and Schmezer, P. (2002) DNA repair capacity after γ-irradition and expression profiles of DNA repair genes in resting and proliferating human peripheral blood lymphocytes. DNA Repair, 1, 237-250.
    • (2002) DNA Repair , vol.1 , pp. 237-250
    • Meyer, C.1    Popanda, O.2    Zelezny, O.3    Von Brevern, M.4    Bach, A.5    Bartsch, H.6    Schmezer, P.7
  • 32
    • 0031717014 scopus 로고    scopus 로고
    • The Saccharomyces cerevisiae gene PSO5/Rad16 is involved in the regulation of DNA damage-inducible genes RNR2 and RNR3
    • Paesi-Toresan, S.O., Maris, A.F., Brendel, M. and Henriques, J.A.P. (1998) The Saccharomyces cerevisiae gene PSO5/Rad16 is involved in the regulation of DNA damage-inducible genes RNR2 and RNR3. Curr. Genet. 34, 124-127.
    • (1998) Curr. Genet. , vol.34 , pp. 124-127
    • Paesi-Toresan, S.O.1    Maris, A.F.2    Brendel, M.3    Henriques, J.A.P.4
  • 33
    • 0035984373 scopus 로고    scopus 로고
    • Characterization of cis-acting element involved in cell cycle phase-independent activation of Arath;CycB1;1 transcription and identification of putative regulatory proteins
    • Planchais, S., Perennes, C., Glab, N., Mironov, V., Inze, D. and Bergounioux, C. (2002) Characterization of cis-acting element involved in cell cycle phase-independent activation of Arath;CycB1;1 transcription and identification of putative regulatory proteins. Plant Mol. Biol. 50, 111-127.
    • (2002) Plant Mol. Biol. , vol.50 , pp. 111-127
    • Planchais, S.1    Perennes, C.2    Glab, N.3    Mironov, V.4    Inze, D.5    Bergounioux, C.6
  • 34
    • 0029167734 scopus 로고
    • Induction of intrachromosomal homologous recombination in whole plants
    • Puchta, H., Swoboda, P. and Hohn, B. (1995) Induction of intrachromosomal homologous recombination in whole plants. Plant J. 7, 203-210.
    • (1995) Plant J. , vol.7 , pp. 203-210
    • Puchta, H.1    Swoboda, P.2    Hohn, B.3
  • 35
    • 0035057561 scopus 로고    scopus 로고
    • Validation of array-based gene expression profiles by real-time (kinetic) RT-PCR
    • Rajeevan, M.S., Vernon, S.D., Taysavang, N. and Unger, E.R. (2001) Validation of array-based gene expression profiles by real-time (kinetic) RT-PCR. J. Mol. Diag. 3, 26-31.
    • (2001) J. Mol. Diag. , vol.3 , pp. 26-31
    • Rajeevan, M.S.1    Vernon, S.D.2    Taysavang, N.3    Unger, E.R.4
  • 38
    • 0035949690 scopus 로고    scopus 로고
    • Gene transcription analysis of Saccharomyces cerevisiae exposed to neocarzinostatin protein-chromophore complex reveals evidence of DNA damage, a potential mechanism of resistance, and consequences of prolonged exposure
    • Schaus, S.E., Cavalieri, D. and Myers, A.G. (2001) Gene transcription analysis of Saccharomyces cerevisiae exposed to neocarzinostatin protein-chromophore complex reveals evidence of DNA damage, a potential mechanism of resistance, and consequences of prolonged exposure. Proc. Natl. Acad. Sci. USA, 98, 11075-11080.
    • (2001) Proc. Natl. Acad. Sci. USA , vol.98 , pp. 11075-11080
    • Schaus, S.E.1    Cavalieri, D.2    Myers, A.G.3
  • 40
    • 0036679053 scopus 로고    scopus 로고
    • Monitoring the expression profiles of 7000 Arabidopsis genes under drought, cold and high-salinity stresses using a full-length cDNA microarray
    • Seki, M., Narusaka, M., Ishida, J. et al. (2002) Monitoring the expression profiles of 7000 Arabidopsis genes under drought, cold and high-salinity stresses using a full-length cDNA microarray. Plant J, 31, 279-292.
    • (2002) Plant J. , vol.31 , pp. 279-292
    • Seki, M.1    Narusaka, M.2    Ishida, J.3
  • 41
    • 0037022571 scopus 로고    scopus 로고
    • Analysis of the ultraviolet B response in primary human keratinocytes using oligonucleotide microarrays
    • Sesto, A., Navarro, M., Burslem, F. and Jorcano, J.L. (2002) Analysis of the ultraviolet B response in primary human keratinocytes using oligonucleotide microarrays. Proc. Natl. Acad. Sci. USA, 99, 2965-2970.
    • (2002) Proc. Natl. Acad. Sci. USA , vol.99 , pp. 2965-2970
    • Sesto, A.1    Navarro, M.2    Burslem, F.3    Jorcano, J.L.4
  • 43
    • 0034649566 scopus 로고    scopus 로고
    • Analysis of the genome sequence of the flowering plant Arabidopsis thaliana
    • The Arabidopsis Genome Initiative
    • The Arabidopsis Genome Initiative (2000) Analysis of the genome sequence of the flowering plant Arabidopsis thaliana. Nature, 408, 796-815.
    • (2000) Nature , vol.408 , pp. 796-815
  • 44
    • 0035201585 scopus 로고    scopus 로고
    • Response of Arabidodpsis to iron deficiency stress as revealed by microarray analysis
    • Thimm, O., Essigmann, B., Kloska, S., Altmann, T. and Buckhout, T.J. (2001) Response of Arabidodpsis to iron deficiency stress as revealed by microarray analysis. Plant Physiol. 127, 1030-1043.
    • (2001) Plant Physiol. , vol.127 , pp. 1030-1043
    • Thimm, O.1    Essigmann, B.2    Kloska, S.3    Altmann, T.4    Buckhout, T.J.5
  • 45
    • 0035942271 scopus 로고    scopus 로고
    • Significance analysis of microarrays applied to ionizing radiation response
    • Tusher, V.G., Tibshirani, R. and Chu, G. (2001) Significance analysis of microarrays applied to ionizing radiation response. Proc. Natl. Acad. Sci. USA, 98, 5116-5121.
    • (2001) Proc. Natl. Acad. Sci. USA , vol.98 , pp. 5116-5121
    • Tusher, V.G.1    Tibshirani, R.2    Chu, G.3
  • 46
    • 0035868754 scopus 로고    scopus 로고
    • Mitogen-activated protein kinase phosphatase is required for genotoxic stress relief in Arabidopsis
    • Ulm, R., Revenkova, E., di Sansebastiano, G.P., Bechtold, N. and Paszkowski, J. (2001) Mitogen-activated protein kinase phosphatase is required for genotoxic stress relief in Arabidopsis. Genes Dev. 15, 699-709.
    • (2001) Genes Dev. , vol.15 , pp. 699-709
    • Ulm, R.1    Revenkova, E.2    Di Sansebastiano, G.P.3    Bechtold, N.4    Paszkowski, J.5
  • 47
    • 18744393379 scopus 로고    scopus 로고
    • Distinct regulation of salinity and genotoxic stress responses by Arabidopsis MAP kinase phosphatase 1
    • Ulm, R., Ichimura, K., Mizoguchi, T., Peck, S.C., Zhu, T., Wang, X., Shinozaki, K. and Paszkowski, J. (2002) Distinct regulation of salinity and genotoxic stress responses by Arabidopsis MAP kinase phosphatase 1. EMBO J. 21, 6483-6493.
    • (2002) EMBO J. , vol.21 , pp. 6483-6493
    • Ulm, R.1    Ichimura, K.2    Mizoguchi, T.3    Peck, S.C.4    Zhu, T.5    Wang, X.6    Shinozaki, K.7    Paszkowski, J.8
  • 50
    • 12244274355 scopus 로고    scopus 로고
    • DNA-damage induction of RAD54 can be regulated independently of the Rad9- and DDC1-dependent checkpoints that regulate RNR2
    • Walsh, L., Schmuckli-Maurer, J., Billinton, N., Barker, M.G., Heyer, W.D. and Walmsley, R.M. (2002) DNA-damage induction of RAD54 can be regulated independently of the Rad9- and DDC1-dependent checkpoints that regulate RNR2. Curr. Genet. 41, 232-240.
    • (2002) Curr. Genet. , vol.41 , pp. 232-240
    • Walsh, L.1    Schmuckli-Maurer, J.2    Billinton, N.3    Barker, M.G.4    Heyer, W.D.5    Walmsley, R.M.6
  • 51
    • 0033775992 scopus 로고    scopus 로고
    • Arabidopsis DNA ligase IV is induced by γ-irradiation and interacts with an Arabidopsis homologue of the double strand break repair protein XRCC4
    • West, C.E., Waterworth, W.M., Jiang, Q. and Bray, C.M. (2000) Arabidopsis DNA ligase IV is induced by γ-irradiation and interacts with an Arabidopsis homologue of the double strand break repair protein XRCC4. Plant J. 24, 67-78.
    • (2000) Plant J. , vol.24 , pp. 67-78
    • West, C.E.1    Waterworth, W.M.2    Jiang, Q.3    Bray, C.M.4
  • 52
    • 0036159744 scopus 로고    scopus 로고
    • NBR1 interacts with fasciculation and elongation protein zeta-1 (FEZ1) and calcium and integrin binding protein (CIB) and shows developmentally restricted expression in the neural tube
    • Whitehouse, C., Chambers, J., Howe, K., Cobourne, M., Sharpem, P. and Solomon, E. (2002) NBR1 interacts with fasciculation and elongation protein zeta-1 (FEZ1) and calcium and integrin binding protein (CIB) and shows developmentally restricted expression in the neural tube. Eur. J. Biochem. 269, 538-545.
    • (2002) Eur. J. Biochem. , vol.269 , pp. 538-545
    • Whitehouse, C.1    Chambers, J.2    Howe, K.3    Cobourne, M.4    Sharpem, P.5    Solomon, E.6
  • 53
    • 0034524684 scopus 로고    scopus 로고
    • Large-scale profiling of the Arabidopsis transcriptome
    • Zhu, T. and Wang, X. (2000) Large-scale profiling of the Arabidopsis transcriptome. Plant Physiol. 124, 1472-1476.
    • (2000) Plant Physiol. , vol.124 , pp. 1472-1476
    • Zhu, T.1    Wang, X.2


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