Designing hardware for protein sequence analysis

Bioinformatics

Volumn 19, Issue 14, 2003, Pages 1739-1740

  Marongiu, Alessandro ^a   Palazzari, Paolo ^b   Rosato, Vittorio ^b  

^a IPETEC srl   (Italy)

^b ENEA   (Italy)

Author keywords

[No Author keywords available]

Indexed keywords

PROTEIN; PROTEOME;

ALGORITHM; AMINO ACID SEQUENCE; ARTICLE; CHEMISTRY; COMPARATIVE STUDY; COMPUTER; COMPUTER ANALYSIS; COMPUTER LANGUAGE; COMPUTER SYSTEM; DEVICE; EQUIPMENT; EQUIPMENT DESIGN; INSTRUMENTATION; METHODOLOGY; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROTEOMICS; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS; SIGNAL PROCESSOR;

EID: 0141617561     PISSN: 13674803     EISSN: 13674811     Source Type: Journal    
DOI: 10.1093/bioinformatics/btg228     Document Type: Article

References (6)

1. Marongiu,A. and Palazzari,P. (2001) Automatic implementation of affine iterative algorithms: design flow and communication synthesis. Comp. Phys. Comm., 139.
2. Yamaguchi,Y., et al. (2002) High speed homology search with FPGAs. Pacific Symposium on Biocomputing.
3. Marongiu,A., Palazzari,P., Cinque,L. and Mastronardo,F. (2000) High level software synthesis of affine iterative algorithms onto parallel architectures. Proc. of HPCN Europe 8-10, May 2000, Amsterdam.
4. Marongiu,A. and Palazzari,P. (2000) Automatic mapping of system of affine recurrence equations (SARE) onto distributed memory parallel systems. IEEE Trans. Soft. Eng., 26, 262.
5. Loechner,V. and Mongenet,C. (1996) OPERA: a toolbox for loop parallelization, International Workshop on Software Engineering for Parallel and Distributed Systems.
6. Henikoff,S. and Henikoff,J.G. (1992) Amino acid substitution matrices from protein blocks. Proc. Natl Acad. Sci. USA, 89, 10915-10519.