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Volumn 26, Issue 3, 2003, Pages 367-375

Tsukamurella spumae sp. nov., a novel actinomycete associated with foaming in activated sludge plants

Author keywords

16S rDNA; Mycolic acids; Polyphasic taxonomy; Tsukamurella spumae sp. nov.

Indexed keywords

DNA 16S;

EID: 0141593801     PISSN: 07232020     EISSN: None     Source Type: Journal    
DOI: 10.1078/072320203322497392     Document Type: Article
Times cited : (33)

References (57)
  • 1
    • 0026608859 scopus 로고
    • Outbreak of pseudoinfection with Tsukamurella paurometabolum traced to laboratory contamination: Efficacy of joint epidemiological and laboratory investigation
    • Auerbach, S. B., McNeil, M. M., Brown, J. M., Lasker, B. A., Jarvis, W. R.: Outbreak of pseudoinfection with Tsukamurella paurometabolum traced to laboratory contamination: Efficacy of joint epidemiological and laboratory investigation. Clin. Infect. Dis. 14, 1015-1022 (1992).
    • (1992) Clin. Infect. Dis. , vol.14 , pp. 1015-1022
    • Auerbach, S.B.1    McNeil, M.M.2    Brown, J.M.3    Lasker, B.A.4    Jarvis, W.R.5
  • 5
    • 0028904058 scopus 로고
    • A phylogenetic analysis of the genus Nocardia with 16S rRNA gene sequences
    • Chun, J., Goodfellow, M.: A phylogenetic analysis of the genus Nocardia with 16S rRNA gene sequences. Int. J. Syst. Bacteriol. 45, 240-245 (1995).
    • (1995) Int. J. Syst. Bacteriol. , vol.45 , pp. 240-245
    • Chun, J.1    Goodfellow, M.2
  • 6
    • 0020033722 scopus 로고
    • A survey of the structures of mycolic acids in Corynebacterium and related taxa
    • Collins, M. D., Goodfellow, M., Minnikin, D. E.: A survey of the structures of mycolic acids in Corynebacterium and related taxa. J. Gen. Microbiol. 128, 129-149 (1982).
    • (1982) J. Gen. Microbiol. , vol.128 , pp. 129-149
    • Collins, M.D.1    Goodfellow, M.2    Minnikin, D.E.3
  • 7
    • 0023713354 scopus 로고
    • Tsukamurella gen. nov., harboring Corynebacterium paurometabolum and Rhodococcus aurantiacus
    • Collins, M. D., Smida, J., Dorsch, M., Stackebrandt, E.: Tsukamurella gen. nov., harboring Corynebacterium paurometabolum and Rhodococcus aurantiacus. Int. J. Syst. Bacteriol. 38, 385-391 (1988).
    • (1988) Int. J. Syst. Bacteriol. , vol.38 , pp. 385-391
    • Collins, M.D.1    Smida, J.2    Dorsch, M.3    Stackebrandt, E.4
  • 8
    • 0034009096 scopus 로고    scopus 로고
    • Quantitative use of fluorescence in situ hybridization to examine relationships between mycolic acid-containing actinomycetes and foaming in activated sludge plants
    • Davenport, R. J., Curtis, T. P., Goodfellow, M., Stainsby, F. M., Bingley, M.: Quantitative use of fluorescence in situ hybridization to examine relationships between mycolic acid-containing actinomycetes and foaming in activated sludge plants. Appl. Environ. Microbiol. 66, 1158-1166 (2000).
    • (2000) Appl. Environ. Microbiol. , vol.66 , pp. 1158-1166
    • Davenport, R.J.1    Curtis, T.P.2    Goodfellow, M.3    Stainsby, F.M.4    Bingley, M.5
  • 9
    • 0036730237 scopus 로고    scopus 로고
    • Microbial community structures in foaming and non-foaming full scale activated sludge systems
    • De Los Reyes III, F. L., Raskin, L.: Microbial community structures in foaming and non-foaming full scale activated sludge systems. Wat. Environ. Res. 74, 437-449 (2002).
    • (2002) Wat. Environ. Res. , vol.74 , pp. 437-449
    • De Los Reyes F.L. III1    Raskin, L.2
  • 10
    • 0031844804 scopus 로고    scopus 로고
    • Quantification of Gordona amarae strains in foaming activated sludge and anaerobic digester systems with oligonucleotide hybridization probes
    • De Los Reyes, M. F., De Los Reyes III, F. L., Hernandez, M., Raskin, L.: Quantification of Gordona amarae strains in foaming activated sludge and anaerobic digester systems with oligonucleotide hybridization probes. Appl. Env. Microbiol. 64, 2503-2512 (1998).
    • (1998) Appl. Env. Microbiol. , vol.64 , pp. 2503-2512
    • De Los Reyes, M.F.1    De Los Reyes F.L. III2    Hernandez, M.3    Raskin, L.4
  • 11
    • 0024358339 scopus 로고
    • Fluorometric deoxyribonucleic acid-deoxyribonucleic acid hybridization in microdilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains
    • Ezaki, T., Hashimoto, Y., Yabuuchi, E.: Fluorometric deoxyribonucleic acid-deoxyribonucleic acid hybridization in microdilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains. Int. J. Syst. Bacteriol. 39, 224-229 (1989).
    • (1989) Int. J. Syst. Bacteriol. , vol.39 , pp. 224-229
    • Ezaki, T.1    Hashimoto, Y.2    Yabuuchi, E.3
  • 12
    • 0019797407 scopus 로고
    • Evolutionary trees from DNA sequences: A maximum likelihood approach
    • Felsenstein, J.: Evolutionary trees from DNA sequences: a maximum likelihood approach. J. Mol. Evol. 17, 368-376 (1981).
    • (1981) J. Mol. Evol. , vol.17 , pp. 368-376
    • Felsenstein, J.1
  • 13
    • 0000461280 scopus 로고
    • Confidence limits on phylogenies: An approach using the bootstrap
    • Felsenstein, J.: Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39, 783-791 (1985).
    • (1985) Evolution , vol.39 , pp. 783-791
    • Felsenstein, J.1
  • 15
    • 0014211361 scopus 로고
    • Construction of phylogenetic trees: A method based on mutation distances as estimated from cytochrome c sequences is of general applicability
    • Fitch, W. M., Margoliash, E.: Construction of phylogenetic trees: a method based on mutation distances as estimated from cytochrome c sequences is of general applicability. Science 155, 279-284 (1967).
    • (1967) Science , vol.155 , pp. 279-284
    • Fitch, W.M.1    Margoliash, E.2
  • 16
    • 0015148670 scopus 로고
    • Numerical taxonomy of some nocardioform bacteria
    • Goodfellow, M.: Numerical taxonomy of some nocardioform bacteria. J. Gen. Microbiol. 69, 33-80 (1971).
    • (1971) J. Gen. Microbiol. , vol.69 , pp. 33-80
    • Goodfellow, M.1
  • 17
    • 0026181776 scopus 로고
    • Polyphasic taxonomic study of the genera Gordonia and Tsukamurella including the description of Tsukamurella wratislaviensis sp. nov.
    • Goodfellow, M., Zakrzewska-Czerwinska, J., Thomas, E.G., Mordarski, M., Ward, A. C., James, A. L.: Polyphasic taxonomic study of the genera Gordonia and Tsukamurella including the description of Tsukamurella wratislaviensis sp. nov. Zbl. Bakt. 275, 162-178 (1991).
    • (1991) Zbl. Bakt. , vol.275 , pp. 162-178
    • Goodfellow, M.1    Zakrzewska-Czerwinska, J.2    Thomas, E.G.3    Mordarski, M.4    Ward, A.C.5    James, A.L.6
  • 18
    • 0030512077 scopus 로고    scopus 로고
    • Actinomycete diversity associated with foaming in activated sludge plants
    • Goodfellow, M., Davenport, R., Stainsby, F. M., Curtis, T. P.: Actinomycete diversity associated with foaming in activated sludge plants. J. Ind. Microbiol. 17, 268-280 (1996).
    • (1996) J. Ind. Microbiol. , vol.17 , pp. 268-280
    • Goodfellow, M.1    Davenport, R.2    Stainsby, F.M.3    Curtis, T.P.4
  • 20
    • 0002157735 scopus 로고    scopus 로고
    • Actinomycete systematics: An unfinished synthesis
    • Goodfellow, M., Isik, Y., Yates, E.: Actinomycete systematics: an unfinished synthesis. Nova Acta Leopoldina NF80, Nr. 312, 47-82 (1999).
    • (1999) Nova Acta Leopoldina , vol.NF80 , Issue.312 , pp. 47-82
    • Goodfellow, M.1    Isik, Y.2    Yates, E.3
  • 21
    • 0002418395 scopus 로고
    • The taxonomy of soil bacteria
    • (T.R.G. Gray and D. Parkinson, eds), Liverpool, Liverpool University Press
    • Gordon, R. E.: The taxonomy of soil bacteria, pp. 293-321. In: The ecology of soil bacteria. (T.R.G. Gray and D. Parkinson, eds), Liverpool, Liverpool University Press (1967).
    • (1967) The Ecology of Soil Bacteria , pp. 293-321
    • Gordon, R.E.1
  • 22
    • 84876693306 scopus 로고
    • Identification of Nocardia caviae (Erikson) nov. comb.
    • Gordon, R. E., Mihm, J. M.: Identification of Nocardia caviae (Erikson) nov. comb. Ann. N.Y. Acad. Sci. 98, 628-636 (1962).
    • (1962) Ann. N.Y. Acad. Sci. , vol.98 , pp. 628-636
    • Gordon, R.E.1    Mihm, J.M.2
  • 23
    • 0032434673 scopus 로고    scopus 로고
    • Evaluation of a microplate DNA:DNA hybridization method compared with the initial renaturation method
    • Goris, J., Suzuki, K. I., De Vos, P., Nakase, T., Kersters, K.: Evaluation of a microplate DNA:DNA hybridization method compared with the initial renaturation method. Can. J. Microbiol. 44, 1148-1153 (1998).
    • (1998) Can. J. Microbiol. , vol.44 , pp. 1148-1153
    • Goris, J.1    Suzuki, K.I.2    De Vos, P.3    Nakase, T.4    Kersters, K.5
  • 26
    • 0000732090 scopus 로고
    • Evolution of protein molecules
    • (H.N. Munro, Ed.). New York, Academic Press
    • Jukes, T. H., Cantor, C. R.: Evolution of protein molecules, pp. 21-132. In: Mammalian protein metabolism, volume 3 (H.N. Munro, Ed.). New York, Academic Press (1969).
    • (1969) Mammalian Protein Metabolism , vol.3 , pp. 21-132
    • Jukes, T.H.1    Cantor, C.R.2
  • 29
    • 0001579749 scopus 로고    scopus 로고
    • Fatty acid and menaquinone analysis of actinomycetes and related organisms
    • (M. Goodfellow and D.E. Minnikin, eds.). London, Academic Press
    • Kroppenstedt, R. M.: Fatty acid and menaquinone analysis of actinomycetes and related organisms, pp. 173-199. In: Clinical methods in bacterial systematics (M. Goodfellow and D.E. Minnikin, eds.). London, Academic Press.
    • Clinical Methods in Bacterial Systematics , pp. 173-199
    • Kroppenstedt, R.M.1
  • 30
    • 0002768530 scopus 로고
    • A critical evaluation of the genera of aerobic actinomycetes
    • (H. Prauser, ed.), Jena, Gustav Fischer Verlag
    • Lechevalier, H.A., Lechevalier, M.P.: A critical evaluation of the genera of aerobic actinomycetes, pp. 393-401. In: The Actinomycetales (H. Prauser, ed.), Jena, Gustav Fischer Verlag (1970).
    • (1970) The Actinomycetales , pp. 393-401
    • Lechevalier, H.A.1    Lechevalier, M.P.2
  • 31
    • 73049166370 scopus 로고
    • Thermal denaturation of deoxyribonucleic acids
    • Marmur, J., Doty, P.: Thermal denaturation of deoxyribonucleic acids. J. Mol. Biol. 3, 585-594 (1961).
    • (1961) J. Mol. Biol. , vol.3 , pp. 585-594
    • Marmur, J.1    Doty, P.2
  • 32
    • 0030915099 scopus 로고    scopus 로고
    • Fatty acid characterization of rapidly growing pathogenic aerobic actinomycetes as a means of identification
    • McNabb, A., Shuttleworth, R., Behme, R., Colby, W.D.: Fatty acid characterization of rapidly growing pathogenic aerobic actinomycetes as a means of identification. J. Clin. Microbiol. 35, 1361-1368 (1997).
    • (1997) J. Clin. Microbiol. , vol.35 , pp. 1361-1368
    • McNabb, A.1    Shuttleworth, R.2    Behme, R.3    Colby, W.D.4
  • 33
    • 0018834020 scopus 로고
    • Thin-layer chromatography of methanolysates of mycolic acid-containing bacteria
    • Minnikin, D. E., Hutchinson, I. G., Caldicott, A. B., Goodfellow, M.: Thin-layer chromatography of methanolysates of mycolic acid-containing bacteria. J. Chromatogr. 188, 221-233 (1980).
    • (1980) J. Chromatogr. , vol.188 , pp. 221-233
    • Minnikin, D.E.1    Hutchinson, I.G.2    Caldicott, A.B.3    Goodfellow, M.4
  • 35
    • 0015357317 scopus 로고
    • Chemotaxonomic characters and classification of some nocardioform bacteria
    • Mordarska, H., Mordarski, M., Goodfellow, M.: Chemotaxonomic characters and classification of some nocardioform bacteria. J. Gen. Microbiol. 71, 77-86 (1972).
    • (1972) J. Gen. Microbiol. , vol.71 , pp. 77-86
    • Mordarska, H.1    Mordarski, M.2    Goodfellow, M.3
  • 36
    • 0017121158 scopus 로고
    • Deoxyribonucleic acid reassociation in the classification of the "rhodochrous" complex and allied taxa
    • Mordarski, M., Szyba, K., Pulverer, G., Goodfellow, M.: Deoxyribonucleic acid reassociation in the classification of the "rhodochrous" complex and allied taxa. J. Gen. Microbiol. 94, 235-245 (1976).
    • (1976) J. Gen. Microbiol. , vol.94 , pp. 235-245
    • Mordarski, M.1    Szyba, K.2    Pulverer, G.3    Goodfellow, M.4
  • 39
    • 0023375195 scopus 로고
    • The neighbour-joining method: A new method for reconstructing phylogenetic trees
    • Saitou, N., Nei, M.: The neighbour-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4, 406-425 (1987).
    • (1987) Mol. Biol. Evol. , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 42
    • 0004045309 scopus 로고
    • New York, McGraw-Hill
    • Society for American Bacteriologists: Manual for Microbiological Methods. New York, McGraw-Hill (1957).
    • (1957) Manual for Microbiological Methods
  • 43
    • 0031929945 scopus 로고    scopus 로고
    • Numerical taxonomy of Skermania piniformis and related isolates from activated sludge
    • Soddell, J., Seviour, R.: Numerical taxonomy of Skermania piniformis and related isolates from activated sludge. J. Appl. Microbiol. 84, 272-284 (1998).
    • (1998) J. Appl. Microbiol. , vol.84 , pp. 272-284
    • Soddell, J.1    Seviour, R.2
  • 46
    • 0036024737 scopus 로고    scopus 로고
    • Dispelling the Nocardia amarae myth: A phylogenetic and phenotypic study of mycolic acid-containing actinomycetes isolated from activated sludge foam
    • Stainsby, F. M., Soddell, J., Seviour, R., Upton, J., Goodfellow, M.: Dispelling the Nocardia amarae myth: A phylogenetic and phenotypic study of mycolic acid-containing actinomycetes isolated from activated sludge foam. Wat. Sci. Technol. 46, 81-90 (2002).
    • (2002) Wat. Sci. Technol. , vol.46 , pp. 81-90
    • Stainsby, F.M.1    Soddell, J.2    Seviour, R.3    Upton, J.4    Goodfellow, M.5
  • 47
    • 0016202002 scopus 로고
    • Simplified approach to identification of aerobic actinomycetes by thin-layer chromatography
    • Staneck, J. L., Roberts, G. D.: Simplified approach to identification of aerobic actinomycetes by thin-layer chromatography. Appl. Microbiol. 28, 226-231 (1974).
    • (1974) Appl. Microbiol. , vol.28 , pp. 226-231
    • Staneck, J.L.1    Roberts, G.D.2
  • 48
    • 0001344603 scopus 로고
    • A study of bacteria associated with thirty species of insects
    • Steinhaus, E. A.: A study of bacteria associated with thirty species of insects. J. Bacteriol. 42, 757-790 (1942).
    • (1942) J. Bacteriol. , vol.42 , pp. 757-790
    • Steinhaus, E.A.1
  • 49
    • 0015041209 scopus 로고
    • A new species, Gordonia aurantiaca, occurring in sputa of patients with pulmonary disease
    • in Japanese
    • Tsukamura, M., Mizuno, S.: A new species, Gordonia aurantiaca, occurring in sputa of patients with pulmonary disease. Kekkaku 46, 93-98 (1971) [in Japanese].
    • (1971) Kekkaku , vol.46 , pp. 93-98
    • Tsukamura, M.1    Mizuno, S.2
  • 50
    • 0021883996 scopus 로고
    • Rhodococcus sputi sp. nov., nom. rev. and Rhodococcus aurantiacus sp. nov., nom. rev.
    • Tsukamura, M., Yano, I.: Rhodococcus sputi sp. nov., nom. rev. and Rhodococcus aurantiacus sp. nov., nom. rev. Int. J. Syst. Bacteriol. 35, 364-368 (1985).
    • (1985) Int. J. Syst. Bacteriol. , vol.35 , pp. 364-368
    • Tsukamura, M.1    Yano, I.2
  • 51
    • 0017590905 scopus 로고
    • Acyl type of bacterial cell wall: Its simple identification by colorimetric method
    • Uchida, K., Aida, K.: Acyl type of bacterial cell wall: its simple identification by colorimetric method. J. Gen. Appl. Microbiol. 23, 249-260 (1977).
    • (1977) J. Gen. Appl. Microbiol. , vol.23 , pp. 249-260
    • Uchida, K.1    Aida, K.2
  • 52
    • 0000770675 scopus 로고
    • International Committee on Systematic Bacteriology Report of the ad hoc Committee on reconciliation of approaches to bacterial systematics
    • Wayne, L. G., Brenner, D. J., Colwell, R. R. and nine other authors: International Committee on Systematic Bacteriology Report of the ad hoc Committee on reconciliation of approaches to bacterial systematics. Int. J. Syst. Bacteriol. 37, 463-464 (1987).
    • (1987) Int. J. Syst. Bacteriol. , vol.37 , pp. 463-464
    • Wayne, L.G.1    Brenner, D.J.2    Colwell, R.R.3
  • 57
    • 0031045463 scopus 로고    scopus 로고
    • Organisation and nucleotide sequence analysis of the ribosomal gene set (rrn B) from Streptomyces lividans
    • Zarko-Postawka, M., Hunderuk, M., Mordarski, M., Zakrzewska-Czerwinska, J.: Organisation and nucleotide sequence analysis of the ribosomal gene set (rrn B) from Streptomyces lividans. Gene 185, 231-237 (1997).
    • (1997) Gene , vol.185 , pp. 231-237
    • Zarko-Postawka, M.1    Hunderuk, M.2    Mordarski, M.3    Zakrzewska-Czerwinska, J.4


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