Sequence variation and evolution of Cryphonectria hypovirus 1 (CHV-1) in Europe

Virus Research

Volumn 97, Issue 1, 2003, Pages 39-46

  Gobbin, D ^a,b   Hoegger, P J ^a,c   Heiniger, U ^a   Rigling, D ^a  

^a SWISS FEDERAL RESEARCH INSTITUTE WSL   (Switzerland)

^b ETH ZURICH   (Switzerland)

^c UNIVERSITY OF GÖTTINGEN   (Germany)

Author keywords

Chestnut blight; Cryphonectria parasitica; DsRNA; Fungal virus; Genetic diversity; Hypovirus

Indexed keywords

AMINO ACID SEQUENCE; ARTICLE; CALCULATION; CONTROLLED STUDY; CRYPHONECTRIA HYPOVIRUS 1; EUROPE; GENETIC VARIABILITY; MOLECULAR EVOLUTION; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PRIORITY JOURNAL; SEQUENCE HOMOLOGY; VIRUS; VIRUS CULTURE; VIRUS ISOLATION;

CRYPHONECTRIA; CRYPHONECTRIA HYPOVIRUS; CRYPHONECTRIA HYPOVIRUS 1; CRYPHONECTRIA PARASITICA; HYPOVIRUS; TEREBRANTIA;

EID: 0141450365     PISSN: 01681702     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0168-1702(03)00220-X     Document Type: Article

References (37)

1. Allemann C., Hoegger P., Heiniger U., Rigling D. Genetic variation of Cryphonectria hypoviruses (CHV1) in Europe, assessed using RFLP markers. Mol. Ecol. 8:1999;843-854.
2. Anagnostakis S.L. Chestnut blight: the classical problem of an introduced pathogen. Mycologia. 79:1987;23-37.
3. Anagnostakis S.L. Cryphonectria parasitica, cause of chestnut blight. Adv. Plant Pathol. 6:1988;123-136.
4. Bazzigher G., Kanzler E. Long-term conservation of living fungal pathogens. Eur. J. For. Pathol. 15:1985;58-61.
5. Bissegger M., Rigling D., Heiniger U. Population structure, disease development of Cryphonectria parasitica in European chestnut forests in the presence of natural hypovirulence. Phytopathology. 87:1997;50-59.
6. Chen B., Nuss D.L. Infectious cDNA clone of hypovirus CHV1-Euro7: a comparative virology approach to investigate virus-mediated hypovirulence of the chestnut blight fungus Cryphonectria parasitica. J. Virol. 73:1999;985-992.
7. Choi G.H., Nuss D.L. Hypovirulence of chestnut blight fungus conferred by an infectious viral cDNA. Science. 257:1992;800-803.
8. Chung P.H., Bedker P.J., Hillman B.I. Diversity of Cryphonectria parasitica hypovirulence-associated double-stranded RNAs within a chestnut population in New Jersey. Phytopathology. 84:1994;984-990.
9. Cortesi P., Rigling D., Heiniger U. Comparison of vegetative compatibility types in Italian, Swiss subpopulations of Cryphonectria parasitica. Eur. J. For. Pathol. 28:1998;167-176.
10. Domingo E., Holland J.J. RNA virus mutations, fitness for survival. Annu. Rev. Microbiol. 51:1997;151-178.
11. Excoffier L., Smouse P.E., Quattro J.M. Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data. Genetics. 131:1992;479-491.
12. Fahima T., Kazmierczak P., Hansen D.R., Pfeiffer P., Van Alfen N.K. Membrane-associated replication of an unencapsidated double-stranded RNA of the fungus Cryphonectria parasitica. Virology. 195:1993;81-89.
13. Felsenstein J. Confidence limits on phylogenies: an approach using the bootstrap. Evolution. 39:1985;783-791.
14. Heiniger U., Rigling D. Biological control of chestnut blight in Europe. Ann. Rev. Phytopathol. 32:1994;581-599.
15. Hillman B.I., Tian Y., Bedker P.J., Brown M.P. A North American hypovirulent isolate of the chestnut blight fungus with European isolate-related dsRNA. J. Gen. Virol. 73:1992;681-686.
16. Hillman B.I., Halpern B.T., Brown M.P. A viral dsRNA element of the chestnut blight fungus with a distinct genetic organisation. Virology. 201:1994;214-250.
17. Jenkins G.M., Rambaut A., Pybus O.G., Holmes E.C. Rates of molecular evolution in RNA viruses: A quantitative phylogenetic analysis. J. Mol. Evol. 54:2002;156-165.
18. Korber, B., 2000. HIV Signature, Sequence Variation Analysis. In: Rodrigo, A.G., Learn, G.H. (Eds.), Computational Analysis of HIV Molecular Sequences. Kluwer Academic Publishers, Dordrecht, The Netherlands, pp. 55-72.
19. Li W.H., Tanimura M., Sharp P.M. Rates and dates of divergence between AIDS virus nucleotide sequences. Mol. Biol. E. 5:1988;313-330.
20. MacDonald W.L., Fulbright D.W. Biological control of chestnut blight: use, limitations of transmissible hypovirulence. Plant Dis. 75:1991;656-661.
21. McCabe P.M., Pfeiffer P., Van Alfen N.K. The influence of dsRNA viruses on the biology of plant pathogenic fungi. Trends Microbiol. 7:1999;377-381.
22. Milgroom M.G. Population biology of the chestnut blight fungus Cryphonectria parasitica. Can. J. Bot. 73(Suppl. 1):1995;311-319.
23. Milgroom M.G., Wang K., Zhou Y., Kaneko S. Intercontinental population structure of the chestnut blight fungus Cryphonectria parasitica. Mycologia. 88:1996;179-190.
24. Nei M., Gojobori T. Simple methods for estimating the number of synonymous, nonsynonymous nucleotide substitutions. Mol. Biol. E. 3:1986;418-426.
25. Nuss D.L. Biological control of chestnut blight: an example of virus-mediated attenuation of fungal pathogenesis. Microbiol. Rev. 56:1992;561-576.
26. Peever T.L., Liu Y.C., Milgroom M.G. Diversity of hypoviruses, other double-stranded RNAs in Cryphonectria parasitica in North America. Phytopathology. 87:1997;1026-1033.
27. Peever T.L., Liu Y.C., Wang K., Hillman B.I., Foglia R., Milgroom M.G. Incidence, diversity of double-stranded RNAs occurring in the chestnut blight fungus, Cryphonectria parasitica, in China, Japan. Phytopathology. 88:1998;811-817.
28. Peever T.L., Liu Y.C., Cortesi P., Milgroom M.G. Variation in tolerance, virulence in the chestnut blight fungus-hypovirus interaction. Appl. Environ. Microbiol. 66:2000;4863-4869.
29. Rambaut A. Estimating the rate of molecular evolution: incorporating non-contemporaneous sequences into maximum likelihood phylogenies. Bioinformatics. 16:2000;395-399.
30. Rigling, D., Hillman, B.I., 2002. Genus Hypovirus (Hypoviridae). In: Tidona, C.A., Darai, G. (Eds.), The Springer Index of Viruses. Springer, Berlin, New York, pp. 456-460.
31. Robin C., Anziani C., Cortesi P. Relationship between biological control, incidence of hypovirulence, diversity of vegetative compatibility types of Cryphonectria parasitica in France. Phytopathology. 90:2000;730-737.
32. Shapira R., Choi G.H., Nuss D.L. Virus-like genetic organization, expression strategy for a double-stranded RNA genetic element associated with biological control of chestnut blight. EMBO J. 10:1991;731-739.
33. Suzuki Y., Yamaguchi-Kabata Y., Gojobori T. Nucleotide substitution rates in HIV-1. AIDS Rev. 2:2000;39-47.
34. Swofford, D.L., 2003. PAUP. Phylogenetic analysis using parsimony (and other methods). Version 4. Sinauer Associates, Sunderland, MA.
35. Thompson J.D., Higgins D.G., Gibson T.J., Gibson T.J. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties weight matrix choice. Nucleic Acids Res. 22:1994;4673-4680.
36. Weir B.S., Cockerham C.C. Estimating F-statistics for the analysis of population structure. Evolution. 38:1984;1358-1370.
37. Wright S. The genetical structure of populations. Ann. Eugenics. 15:1951;323-354.