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Volumn 79, Issue 1, 2000, Pages 80-93

Three-dimensional Poisson-Nernst-Planck theory studies: Influence of membrane electrostatics on gramicidin a channel conductance

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Indexed keywords

GRAMICIDIN A;

EID: 0043239420     PISSN: 00063495     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0006-3495(00)76275-8     Document Type: Article
Times cited : (180)

References (56)
  • 2
  • 4
    • 0026471029 scopus 로고
    • Molecular determinants of channel function
    • Andersen, O. S., and R. E. Koeppe, II. 1992. Molecular determinants of channel function. Physiol. Rev. 72:S89-S158.
    • (1992) Physiol. Rev. , vol.72
    • Andersen, O.S.1    Koeppe R.E. II2
  • 5
    • 0018795620 scopus 로고
    • Effects of surface charge on the conductance of the gramicidin channel
    • Apell, H. J., E. Bamberg, and P. Läuger. 1979. Effects of surface charge on the conductance of the gramicidin channel. Biochim. Biophys. Acta. 552:369-378.
    • (1979) Biochim. Biophys. Acta , vol.552 , pp. 369-378
    • Apell, H.J.1    Bamberg, E.2    Läuger, P.3
  • 6
    • 0000346708 scopus 로고
    • Gramicidin A transmembrane ion-channel. Three-dimensional structure reconstruction based on NMR spectroscopy and energy refinement
    • Arsen'ev, A. S., A. L. Lomize, I. L. Barsukov, and V. F. Bystrov. 1986. Gramicidin A transmembrane ion-channel. Three-dimensional structure reconstruction based on NMR spectroscopy and energy refinement. Biol. Membr. 3:1077-1104.
    • (1986) Biol. Membr. , vol.3 , pp. 1077-1104
    • Arsen'ev, A.S.1    Lomize, A.L.2    Barsukov, I.L.3    Bystrov, V.F.4
  • 7
    • 0026929304 scopus 로고
    • Ion flow through narrow membrane channels: Part II
    • Barcilon, V., D. P. Chen, and R. S. Eisenberg. 1992. Ion flow through narrow membrane channels: Part II. SIAM J. Appl. Math. 52:1405-1425.
    • (1992) SIAM J. Appl. Math. , vol.52 , pp. 1405-1425
    • Barcilon, V.1    Chen, D.P.2    Eisenberg, R.S.3
  • 9
    • 0027533833 scopus 로고
    • The use of physical methods in determining gramicidin channel structure and function
    • Busath, D. D. 1993. The use of physical methods in determining gramicidin channel structure and function. Annu. Rev. Physiol. 55:473-501.
    • (1993) Annu. Rev. Physiol. , vol.55 , pp. 473-501
    • Busath, D.D.1
  • 11
    • 0002121327 scopus 로고
    • Stochastic problems in physics and astronomy
    • Chandrasekhar, S. 1943. Stochastic problems in physics and astronomy. Rev. Mod. Phys. 15:1-89.
    • (1943) Rev. Mod. Phys. , vol.15 , pp. 1-89
    • Chandrasekhar, S.1
  • 12
    • 0032708637 scopus 로고    scopus 로고
    • Permeation of ions across the potassium channel: Brownian dynamics studies
    • Chung, S.-H., T. Allen, M. Hoyles, and S. Kuyucak. 1999. Permeation of ions across the potassium channel: Brownian dynamics studies. Biophys. J. 77:2517-2533.
    • (1999) Biophys. J. , vol.77 , pp. 2517-2533
    • Chung, S.-H.1    Allen, T.2    Hoyles, M.3    Kuyucak, S.4
  • 13
    • 0031870447 scopus 로고    scopus 로고
    • Study of ionic currents across a model membrane channel using Brownian dynamics
    • Chung, S.-H., M. Hoyles, T. Allen, and S. Kuyucak. 1998. Study of ionic currents across a model membrane channel using Brownian dynamics. Biophys. J. 75:793-809.
    • (1998) Biophys. J. , vol.75 , pp. 793-809
    • Chung, S.-H.1    Hoyles, M.2    Allen, T.3    Kuyucak, S.4
  • 14
    • 0000383313 scopus 로고    scopus 로고
    • Numerical methods for solving Poisson and Poisson-Boltzmann type equations
    • P. v. R. Schleyer, N. L. Allinger, T. Clark, J. Gasteiter, P. A. Kollman, H. F. Schaefer, III, and H. F. Schreiner, editors. John Wiley and Sons, New York
    • Coalson, R. D., and T. L. Beck. 1998. Numerical methods for solving Poisson and Poisson-Boltzmann type equations. In Encyclopedia of Computational Chemistry. P. v. R. Schleyer, N. L. Allinger, T. Clark, J. Gasteiter, P. A. Kollman, H. F. Schaefer, III, and H. F. Schreiner, editors. Vol. 3. John Wiley and Sons, New York. 2080-2100.
    • (1998) Encyclopedia of Computational Chemistry , vol.3 , pp. 2080-2100
    • Coalson, R.D.1    Beck, T.L.2
  • 15
    • 0021107965 scopus 로고
    • Solvent-accessible surfaces of proteins and nucleic acids
    • Connolly, M. L. 1983. Solvent-accessible surfaces of proteins and nucleic acids. Science. 221:709-713.
    • (1983) Science , vol.221 , pp. 709-713
    • Connolly, M.L.1
  • 17
    • 0032827130 scopus 로고    scopus 로고
    • Test of Poisson-Nernst-Planck theory in ion channels
    • Corry, B., S. Kuyucak, and S.-H. Chung. 1999. Test of Poisson-Nernst-Planck theory in ion channels. J. Gen. Physiol. 114:597-599.
    • (1999) J. Gen. Physiol. , vol.114 , pp. 597-599
    • Corry, B.1    Kuyucak, S.2    Chung, S.-H.3
  • 19
    • 0032989631 scopus 로고    scopus 로고
    • Exploration of the structural features defining the conduction properties of a synthetic ion channel
    • Dieckmann, G. R., J. D. Lear, Q. Zhong, M. L. Klein, W. F. DeGrado, and K. A. Sharp. 1998. Exploration of the structural features defining the conduction properties of a synthetic ion channel. Biophys. J. 76: 618-630.
    • (1998) Biophys. J. , vol.76 , pp. 618-630
    • Dieckmann, G.R.1    Lear, J.D.2    Zhong, Q.3    Klein, M.L.4    DeGrado, W.F.5    Sharp, K.A.6
  • 21
    • 0018789682 scopus 로고
    • Adsorption of monovalent cations to bilayer membranes containing negative phospholipids
    • Eisenberg, M., T. Gresalfi, T. Riccio, and S. McLaughlin. 1979. Adsorption of monovalent cations to bilayer membranes containing negative phospholipids. Biochemistry. 18:5213-5223.
    • (1979) Biochemistry , vol.18 , pp. 5213-5223
    • Eisenberg, M.1    Gresalfi, T.2    Riccio, T.3    McLaughlin, S.4
  • 22
    • 0000770028 scopus 로고    scopus 로고
    • Ionic channels in biological membranes: Natural nanotubes
    • Eisenberg, R. S. 1998. Ionic channels in biological membranes: natural nanotubes. Acc. Chem. Res. 31:117-123.
    • (1998) Acc. Chem. Res. , vol.31 , pp. 117-123
    • Eisenberg, R.S.1
  • 23
    • 0022670331 scopus 로고
    • The membrane dipole potential in a total membrane potential model. Application to hydrophohic ion interactions with membranes
    • Flewelling, R. F., and W. L. Hubbell. 1986. The membrane dipole potential in a total membrane potential model. Application to hydrophohic ion interactions with membranes. Biophys. J. 49:541-552.
    • (1986) Biophys. J. , vol.49 , pp. 541-552
    • Flewelling, R.F.1    Hubbell, W.L.2
  • 24
    • 0026635481 scopus 로고
    • Membrane dipole potentials, hydration forces, and the ordering of water at membrane surfaces
    • Gawrisch, K., D. Ruston, J. Zimmerberg, V. A. Parsegian, R. P. Rand, and N. Fuller. 1992. Membrane dipole potentials, hydration forces, and the ordering of water at membrane surfaces. Biophys. J. 61:1213-1223.
    • (1992) Biophys. J. , vol.61 , pp. 1213-1223
    • Gawrisch, K.1    Ruston, D.2    Zimmerberg, J.3    Parsegian, V.A.4    Rand, R.P.5    Fuller, N.6
  • 25
    • 0026026676 scopus 로고
    • Surface charges and ion channel function
    • Green, W. N., and O. S. Andersen. 1991. Surface charges and ion channel function. Annu. Rev. Physiol. 53:341-359.
    • (1991) Annu. Rev. Physiol. , vol.53 , pp. 341-359
    • Green, W.N.1    Andersen, O.S.2
  • 26
    • 0032988823 scopus 로고    scopus 로고
    • Experimental evidence for hydrophobic matching and membrane-mediated interactions in lipid bilayers containing gramicidin
    • Harroun, T. A., W. T. Heller, T. M. Weiss, L. Yang, and H. W. Huang. 1999a. Experimental evidence for hydrophobic matching and membrane-mediated interactions in lipid bilayers containing gramicidin. Biophys. J. 76:937-945.
    • (1999) Biophys. J. , vol.76 , pp. 937-945
    • Harroun, T.A.1    Heller, W.T.2    Weiss, T.M.3    Yang, L.4    Huang, H.W.5
  • 27
    • 0033038093 scopus 로고    scopus 로고
    • Theoretical analysis of hydrophobic matching and membrane-mediated interactions in lipid bilayers containing gramicidin
    • Harroun, T. A., W. T. Heller, T. M. Weiss, L. Yang, and H. W. Huang. 1999b. Theoretical analysis of hydrophobic matching and membrane-mediated interactions in lipid bilayers containing gramicidin. Biophys. J. 76:3176-3185.
    • (1999) Biophys. J. , vol.76 , pp. 3176-3185
    • Harroun, T.A.1    Heller, W.T.2    Weiss, T.M.3    Yang, L.4    Huang, H.W.5
  • 28
    • 0015829732 scopus 로고
    • Surface charge, surface dipoles and membrane conductance
    • Haydon, D. A., and V. B. Myers. 1973. Surface charge, surface dipoles and membrane conductance. Biochim. Biophys. Acta. 307:429-443.
    • (1973) Biochim. Biophys. Acta , vol.307 , pp. 429-443
    • Haydon, D.A.1    Myers, V.B.2
  • 30
    • 0021358272 scopus 로고
    • The total electrostatic potential in a gramicidin channel
    • Jordan, P. C. 1984. The total electrostatic potential in a gramicidin channel. J. Membr. Biol. 78:91-102.
    • (1984) J. Membr. Biol. , vol.78 , pp. 91-102
    • Jordan, P.C.1
  • 31
    • 0031574382 scopus 로고    scopus 로고
    • High-resolution polypeptide structure in a lamellar phase lipid environment from solid state NMR derived orientational constraints
    • Ketchem, R. R., B. Roux, and T. A. Cross. 1997. High-resolution polypeptide structure in a lamellar phase lipid environment from solid state NMR derived orientational constraints. Structure. 5:1655-1669.
    • (1997) Structure , vol.5 , pp. 1655-1669
    • Ketchem, R.R.1    Roux, B.2    Cross, T.A.3
  • 33
    • 0033032906 scopus 로고    scopus 로고
    • A lattice relaxation algorithm for three-dimensional Poisson-Nernst-Planck theory with application to ion transport through the gramicidin A channel
    • Kurnikova, M. G., R. D. Coalson, P. Graf, and A. Nitzan. 1999. A lattice relaxation algorithm for three-dimensional Poisson-Nernst-Planck theory with application to ion transport through the gramicidin A channel. Biophys. J. 76:642-656.
    • (1999) Biophys. J. , vol.76 , pp. 642-656
    • Kurnikova, M.G.1    Coalson, R.D.2    Graf, P.3    Nitzan, A.4
  • 34
    • 0026011790 scopus 로고
    • General continuum theory for multiion channel. I. Theory
    • Levitt, D. G. 1991a. General continuum theory for multiion channel. I. Theory. Biophys. J. 59:271-277.
    • (1991) Biophys. J. , vol.59 , pp. 271-277
    • Levitt, D.G.1
  • 35
    • 0026078627 scopus 로고
    • General continuum theory for multiion channel. II. Application to acetylcholine channel
    • Levitt, D. G. 1991b. General continuum theory for multiion channel. II. Application to acetylcholine channel. Biophys. J. 59:278-288.
    • (1991) Biophys. J. , vol.59 , pp. 278-288
    • Levitt, D.G.1
  • 36
    • 0033010064 scopus 로고    scopus 로고
    • Modeling of ion channels
    • Levitt, D. G. 1999. Modeling of ion channels. J. Gen. Physiol. 113: 789-794.
    • (1999) J. Gen. Physiol. , vol.113 , pp. 789-794
    • Levitt, D.G.1
  • 37
    • 0001200430 scopus 로고
    • Solving the finite-difference non-linear Poisson-Boltzmann equation
    • Luty, B. A., M. E. Davis, and J. A. McCammon. 1992. Solving the finite-difference non-linear Poisson-Boltzmann equation. J. Comp. Chem. 13:1114-1118.
    • (1992) J. Comp. Chem. , vol.13 , pp. 1114-1118
    • Luty, B.A.1    Davis, M.E.2    McCammon, J.A.3
  • 38
    • 0007165005 scopus 로고    scopus 로고
    • Mobility and solvation of ions in channels
    • Lynden-Bell, R. M., and J. C. Rasaiah. 1996. Mobility and solvation of ions in channels. J. Chem. Phys. 105:9266-9280.
    • (1996) J. Chem. Phys. , vol.105 , pp. 9266-9280
    • Lynden-Bell, R.M.1    Rasaiah, J.C.2
  • 41
    • 0032970498 scopus 로고    scopus 로고
    • Ionic hopping defended
    • Miller, C. 1999. Ionic hopping defended. J. Gen. Physiol. 113:783-787.
    • (1999) J. Gen. Physiol. , vol.113 , pp. 783-787
    • Miller, C.1
  • 43
  • 46
    • 0024976565 scopus 로고
    • Liquid junction potentials calculated from numerical solutions of the Nernst-Planck and Poisson equations
    • Riveros, O. J., T. L. Croxton, and W. M. Armstrong. 1989. Liquid junction potentials calculated from numerical solutions of the Nernst-Planck and Poisson equations. J. Theor. Biol. 140:221-230.
    • (1989) J. Theor. Biol. , vol.140 , pp. 221-230
    • Riveros, O.J.1    Croxton, T.L.2    Armstrong, W.M.3
  • 48
    • 33748583013 scopus 로고
    • Ion transport in a gramicidin-like channel: Dynamics and mobility
    • Roux, B., and M. Karplus. 1991. Ion transport in a gramicidin-like channel: dynamics and mobility. J. Phys. Chem. 75:4856-4868.
    • (1991) J. Phys. Chem. , vol.75 , pp. 4856-4868
    • Roux, B.1    Karplus, M.2
  • 49
    • 0027232024 scopus 로고
    • Ion transport in the gramicidin channel: Free energy of the solvated ion in a model membrane
    • Roux, B., and M. Karplus. 1993. Ion transport in the gramicidin channel: free energy of the solvated ion in a model membrane. J. Am. Chem. Soc. 115:3250-3260.
    • (1993) J. Am. Chem. Soc. , vol.115 , pp. 3250-3260
    • Roux, B.1    Karplus, M.2
  • 50
    • 0031886681 scopus 로고    scopus 로고
    • Calculation of electron-transfer reorganization energies using the finite-difference Poisson-Boltzmann model
    • Sharp, K. A. 1998. Calculation of electron-transfer reorganization energies using the finite-difference Poisson-Boltzmann model. Biophys. J. 74: 1241-1250.
    • (1998) Biophys. J. , vol.74 , pp. 1241-1250
    • Sharp, K.A.1
  • 51
    • 32844457567 scopus 로고
    • Accurate calculation of hydration free-energies using macroscopic solvent models
    • Sitkoff, D., K. A. Sharp, and B. Honig. 1994. Accurate calculation of hydration free-energies using macroscopic solvent models. J. Phys. Chem. 98:1978-1988.
    • (1994) J. Phys. Chem. , vol.98 , pp. 1978-1988
    • Sitkoff, D.1    Sharp, K.A.2    Honig, B.3
  • 52
    • 0014642598 scopus 로고
    • Iterative scheme for 1- and 2-dimensional d.c.-transistor simulation
    • Slotboom, J. W. 1969. Iterative scheme for 1- and 2-dimensional d.c.-transistor simulation. Electron. Lett. 5:677-678.
    • (1969) Electron. Lett. , vol.5 , pp. 677-678
    • Slotboom, J.W.1
  • 53
    • 0031767375 scopus 로고    scopus 로고
    • + ions in models of ion channels: A molecular dynamics study
    • + ions in models of ion channels: a molecular dynamics study Biophys. J. 75:2767-2782.
    • (1998) Biophys. J. , vol.75 , pp. 2767-2782
    • Smith, G.R.1    Sansom, M.S.P.2
  • 54
    • 0030447720 scopus 로고    scopus 로고
    • Structure of staphylococcal alpha-hemolysin, a heptameric transmembrane pore
    • Song, L., M. R. Hobauch, C. Shustak, S. Cheley, H. Bayley, and J. E. Gouaux. 1996. Structure of staphylococcal alpha-hemolysin, a heptameric transmembrane pore. Science. 274:1859-1866.
    • (1996) Science , vol.274 , pp. 1859-1866
    • Song, L.1    Hobauch, M.R.2    Shustak, C.3    Cheley, S.4    Bayley, H.5    Gouaux, J.E.6
  • 55
    • 0000309704 scopus 로고
    • Theoretical perspectives of ion-channel electrostatics, continuum and microscopic approach
    • Venkatchalam, M., and P. Urri. 1983. Theoretical perspectives of ion-channel electrostatics, continuum and microscopic approach. J. Comput. Chem. 4:461-469.
    • (1983) J. Comput. Chem. , vol.4 , pp. 461-469
    • Venkatchalam, M.1    Urri, P.2


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