-
1
-
-
0025183708
-
Basic local alignment search tool
-
Altschul, S. F., W. Gish, W. Miller, E. W. Myers, and D. J. Lipman. 1990. Basic local alignment search tool. J. Mol. Biol. 215:403-410.
-
(1990)
J. Mol. Biol.
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
2
-
-
0028946084
-
Phylogenetic identification and in situ detection of individual microbial cells without cultivation
-
Amann, R. I., W. Ludwig, and K. H. Schleifer. 1995. Phylogenetic identification and in situ detection of individual microbial cells without cultivation. Microbiol. Rev. 59:143-169.
-
(1995)
Microbiol. Rev.
, vol.59
, pp. 143-169
-
-
Amann, R.I.1
Ludwig, W.2
Schleifer, K.H.3
-
3
-
-
1842408356
-
Isolation of Lautropia mirabilis from sputa of a cystic fibrosis patient
-
Ben Dekhil, S. M., M. M. Peel, V. A. Lennox, E. Stackebrandt, and L. I. Sly. 1997. Isolation of Lautropia mirabilis from sputa of a cystic fibrosis patient. J. Clin. Microbiol. 35:1024-1026.
-
(1997)
J. Clin. Microbiol.
, vol.35
, pp. 1024-1026
-
-
Ben Dekhil, S.M.1
Peel, M.M.2
Lennox, V.A.3
Stackebrandt, E.4
Sly, L.I.5
-
4
-
-
0035319656
-
Community structure of denitrifiers, Bacteria, and Archaea along redox gradients in Pacific Northwest marine sediments by terminal restriction fragment length polymorphism analysis of amplified nitrite reductase (nirS) and 16S rRNA genes
-
Braker, G., H. L. Ayala-Del-Rio, A. H. Devol, A. Fesefeldt, and J. M. Tiedje. 2001. Community structure of denitrifiers, Bacteria, and Archaea along redox gradients in Pacific Northwest marine sediments by terminal restriction fragment length polymorphism analysis of amplified nitrite reductase (nirS) and 16S rRNA genes. Appl. Environ. Microbiol. 67:1893-1901.
-
(2001)
Appl. Environ. Microbiol.
, vol.67
, pp. 1893-1901
-
-
Braker, G.1
Ayala-Del-Rio, H.L.2
Devol, A.H.3
Fesefeldt, A.4
Tiedje, J.M.5
-
5
-
-
0032773442
-
Biochemical identification of Citrobacter species defined by DNA hybridization and description of Citrobacter gillenii sp. nov. (formerly Citrobacter genomospecies 10) and Citrobacter murliniae sp. nov. (formerly Citrobacter genomospecies 11)
-
Brenner, D. J., C. M. O'Hara, P. A. D. Grimont, J. M. Janda, E. Falsen, E. Aldova, E. Ageron, J. Schindler, S. L. Abbott, and A. G. Steigerwalt. 1999. Biochemical identification of Citrobacter species defined by DNA hybridization and description of Citrobacter gillenii sp. nov. (formerly Citrobacter genomospecies 10) and Citrobacter murliniae sp. nov. (formerly Citrobacter genomospecies 11). J. Clin. Microbiol. 37:2619-2624.
-
(1999)
J. Clin. Microbiol.
, vol.37
, pp. 2619-2624
-
-
Brenner, D.J.1
O'Hara, C.M.2
Grimont, P.A.D.3
Janda, J.M.4
Falsen, E.5
Aldova, E.6
Ageron, E.7
Schindler, J.8
Abbott, S.L.9
Steigerwalt, A.G.10
-
6
-
-
0035702402
-
Prevalence of the Bacteroides fragilis group and enterotoxigenic Bacteroides fragilis in immunodeficient children
-
Bressane, M. A., L. E. Durigon, and M. J. Avila-Campos. 2001. Prevalence of the Bacteroides fragilis group and enterotoxigenic Bacteroides fragilis in immunodeficient children. Anaerobe 7:277-281.
-
(2001)
Anaerobe
, vol.7
, pp. 277-281
-
-
Bressane, M.A.1
Durigon, L.E.2
Avila-Campos, M.J.3
-
7
-
-
0034469190
-
Terminal restriction fragment length polymorphism monitoring of genes amplified directly from bacterial communities in soils and sediments
-
Bruce, K. D., and M. R. Hughes. 2000. Terminal restriction fragment length polymorphism monitoring of genes amplified directly from bacterial communities in soils and sediments. Mol. Biotechnol. 16:261-269.
-
(2000)
Mol. Biotechnol.
, vol.16
, pp. 261-269
-
-
Bruce, K.D.1
Hughes, M.R.2
-
8
-
-
0034793155
-
Granulicatella and Abiotrophia species from human clinical specimens
-
Christensen, J. J., and R. R. Facklam. 2001. Granulicatella and Abiotrophia species from human clinical specimens. J. Clin. Microbiol. 39:3520-3523.
-
(2001)
J. Clin. Microbiol.
, vol.39
, pp. 3520-3523
-
-
Christensen, J.J.1
Facklam, R.R.2
-
9
-
-
0033591467
-
Bacterial biofilms: A common cause of persistent infections
-
Costerton, J. W., P. S. Stewart, and E. P. Greenberg. 1999. Bacterial biofilms: a common cause of persistent infections. Science 284:1318-1322.
-
(1999)
Science
, vol.284
, pp. 1318-1322
-
-
Costerton, J.W.1
Stewart, P.S.2
Greenberg, E.P.3
-
10
-
-
0036265949
-
Characterization of unusual bacteria isolated from respiratory secretions of cystic fibrosis patients and description of Inquilinus limosus gen. nov., sp. nov
-
Coenye, T., J. Goris, T. Spilker, P. Vandamme, and J. J. LiPuma. 2002. Characterization of unusual bacteria isolated from respiratory secretions of cystic fibrosis patients and description of Inquilinus limosus gen. nov., sp. nov. J. Clin. Microbiol 40:2062-2069.
-
(2002)
J. Clin. Microbiol.
, vol.40
, pp. 2062-2069
-
-
Coenye, T.1
Goris, J.2
Spilker, T.3
Vandamme, P.4
LiPuma, J.J.5
-
11
-
-
0032885134
-
PCR identification of Pseudomonas aeruginosa and direct detection in clinical samples from cystic fibrosis patients
-
da Silva Filho, L. V., J. E. Levi, C. N. Oda Bento, S. R. da Silva Ramos, and T. Rozov. 1999. PCR identification of Pseudomonas aeruginosa and direct detection in clinical samples from cystic fibrosis patients. J. Med. Microbiol. 48:357-361.
-
(1999)
J. Med. Microbiol.
, vol.48
, pp. 357-361
-
-
Da Silva Filho, L.V.1
Levi, J.E.2
Oda Bento, C.N.3
Da Silva Ramos, S.R.4
Rozov, T.5
-
13
-
-
0033941482
-
Assessment of microbial diversity in four southwestern United States soils by 16S rRNA gene terminal restriction fragment analysis
-
Dunbar, J., L. O. Ticknor, and C. R. Kuske. 2000. Assessment of microbial diversity in four southwestern United States soils by 16S rRNA gene terminal restriction fragment analysis. Appl. Environ. Microbiol. 66:2943-2950.
-
(2000)
Appl. Environ. Microbiol.
, vol.66
, pp. 2943-2950
-
-
Dunbar, J.1
Ticknor, L.O.2
Kuske, C.R.3
-
14
-
-
0029032318
-
Effect of genome size and rrn gene copy number on PCR amplification of 16S rRNA genes from a mixture of mixture of bacterial species
-
Farrelly, V., F. A. Rainey, and E. Stackebrandt. 1995. Effect of genome size and rrn gene copy number on PCR amplification of 16S rRNA genes from a mixture of mixture of bacterial species. Appl. Environ. Microbiol. 61:2798-2801.
-
(1995)
Appl. Environ. Microbiol.
, vol.61
, pp. 2798-2801
-
-
Farrelly, V.1
Rainey, F.A.2
Stackebrandt, E.3
-
15
-
-
0022481020
-
Conformity of bacterial growth in sputum and contamination free endobronchial samples in patients with cystic fibrosis
-
Gilljam, H., A. S. Malmborg, and B. Strandvik. 1986. Conformity of bacterial growth in sputum and contamination free endobronchial samples in patients with cystic fibrosis. Thorax 41:641-646.
-
(1986)
Thorax
, vol.41
, pp. 641-646
-
-
Gilljam, H.1
Malmborg, A.S.2
Strandvik, B.3
-
16
-
-
0029814366
-
Microbial pathogenesis in cystic fibrosis: Mucoid Pseudomonas aeruginosa and Burkholderia cepacia
-
Govan, J. R. W., and V. Deretic. 1996. Microbial pathogenesis in cystic fibrosis: mucoid Pseudomonas aeruginosa and Burkholderia cepacia. Microbiol. Rev. 60:539-574.
-
(1996)
Microbiol. Rev.
, vol.60
, pp. 539-574
-
-
Govan, J.R.W.1
Deretic, V.2
-
17
-
-
0034852663
-
Biomonitoring of continuous microbial community adaptation toward more efficient phenol-degradation in a fed-batch bioreactor
-
Guieysse, B., P. Wikstrom, M. Forsman, and B. Mattiasson. 2001. Biomonitoring of continuous microbial community adaptation toward more efficient phenol-degradation in a fed-batch bioreactor. Appl. Microbiol. Biotechnol. 56:780-787.
-
(2001)
Appl. Microbiol. Biotechnol.
, vol.56
, pp. 780-787
-
-
Guieysse, B.1
Wikstrom, P.2
Forsman, M.3
Mattiasson, B.4
-
18
-
-
0036244378
-
Persistent and aggressive bacteria in the lungs of cystic fibrosis children
-
Hart, C. A., and C. Winstanley. 2002. Persistent and aggressive bacteria in the lungs of cystic fibrosis children. Br. Med. Bull. 61:81-96.
-
(2002)
Br. Med. Bull.
, vol.61
, pp. 81-96
-
-
Hart, C.A.1
Winstanley, C.2
-
19
-
-
0035458355
-
Detection of methanotroph diversity on roots of submerged rice plants by molecular retrieval of pmoA, mmoX, mraF, and 16S rRNA and ribosomal DNA, including pmoA-based terminal restriction fragment length polymorphism profiling
-
Horz, H. P., M. T. Yimga, and W. Liesack. 2001. Detection of methanotroph diversity on roots of submerged rice plants by molecular retrieval of pmoA, mmoX, mraF, and 16S rRNA and ribosomal DNA, including pmoA-based terminal restriction fragment length polymorphism profiling. Appl. Environ. Microbiol. 67:4177-4185.
-
(2001)
Appl. Environ. Microbiol.
, vol.67
, pp. 4177-4185
-
-
Horz, H.P.1
Yimga, M.T.2
Liesack, W.3
-
20
-
-
0032696604
-
Pathogenicity of microbes associated with cystic fibrosis
-
Hutchison, M. L., and J. R. W. Govan. 1999. Pathogenicity of microbes associated with cystic fibrosis. Microbes Infect. 1:1005-1014.
-
(1999)
Microbes Infect.
, vol.1
, pp. 1005-1014
-
-
Hutchison, M.L.1
Govan, J.R.W.2
-
21
-
-
0035319323
-
16S ribosomal DNA terminal restriction fragment pattern analysis of bacterial communities in feces of rats fed Lactobacillus acidophilus NCFM
-
Kaplan, C. W., J. C. Astaire, M. E. Sanders, B. S. Reddy, and C. L. Kitts. 2001. 16S ribosomal DNA terminal restriction fragment pattern analysis of bacterial communities in feces of rats fed Lactobacillus acidophilus NCFM. Appl. Environ. Microbiol. 67:1935-1939.
-
(2001)
Appl. Environ. Microbiol.
, vol.67
, pp. 1935-1939
-
-
Kaplan, C.W.1
Astaire, J.C.2
Sanders, M.E.3
Reddy, B.S.4
Kitts, C.L.5
-
22
-
-
0036433822
-
Interspecies communication between Burkholderia cepacia and Pseudomonas aeruginosa
-
Lewenza, S., M. B. Visser, and P. A. Sokol. 2002. Interspecies communication between Burkholderia cepacia and Pseudomonas aeruginosa. Can. J. Microbiol. 48:707-716.
-
(2002)
Can. J. Microbiol.
, vol.48
, pp. 707-716
-
-
Lewenza, S.1
Visser, M.B.2
Sokol, P.A.3
-
23
-
-
0032850938
-
Development of rRNA-based PCR assays for identification of Burkholderia cepacia complex isolates recovered from cystic fibrosis patients
-
LiPuma, J. J., B. J. Dulaney, J. D. Mmenamin, P. W. Whitby, T. L. Stull, T. Coenye, and P. Vandamme. 1999. Development of rRNA-based PCR assays for identification of Burkholderia cepacia complex isolates recovered from cystic fibrosis patients. J. Clin. Microbiol. 37:3167-3170.
-
(1999)
J. Clin. Microbiol.
, vol.37
, pp. 3167-3170
-
-
LiPuma, J.J.1
Dulaney, B.J.2
Mmenamin, J.D.3
Whitby, P.W.4
Stull, T.L.5
Coenye, T.6
Vandamme, P.7
-
24
-
-
0030661563
-
Characterization of microbial diversity by determining terminal restriction fragment length polymorphisms of genes encoding 16S rRNA
-
Liu, W.-T., T. L. Marsh, H. Cheng, and L. J. Forney. 1997. Characterization of microbial diversity by determining terminal restriction fragment length polymorphisms of genes encoding 16S rRNA. Appl. Environ. Microbiol. 63:4516-4522.
-
(1997)
Appl. Environ. Microbiol.
, vol.63
, pp. 4516-4522
-
-
Liu, W.-T.1
Marsh, T.L.2
Cheng, H.3
Forney, L.J.4
-
26
-
-
0036301602
-
Burkholderia cepacia complex infection in patients with cystic fibrosis
-
Mahenthiralingam, E., A. Baldwin, and P. Vandamme. 2002. Burkholderia cepacia complex infection in patients with cystic fibrosis. J. Med. Microbiol. 51:533-538.
-
(2002)
J. Med. Microbiol.
, vol.51
, pp. 533-538
-
-
Mahenthiralingam, E.1
Baldwin, A.2
Vandamme, P.3
-
27
-
-
0029071567
-
Genetic diversity of Pseudomonas aeruginosa strains isolated from patients with cystic fibrosis revealed by restriction fragment length polymorphism of the rRNA gene region
-
Martin, C., M. A. Ichou, P. Massicot, A. Goudeau, and R. Quentin. 1995. Genetic diversity of Pseudomonas aeruginosa strains isolated from patients with cystic fibrosis revealed by restriction fragment length polymorphism of the rRNA gene region. J. Clin. Microbiol. 33:1461-1466.
-
(1995)
J. Clin. Microbiol.
, vol.33
, pp. 1461-1466
-
-
Martin, C.1
Ichou, M.A.2
Massicot, P.3
Goudeau, A.4
Quentin, R.5
-
28
-
-
0035205603
-
PCR-based detection and identification of Burkholderia cepacia complex pathogens in sputum from cystic fibrosis patients
-
McDowell, A., E. Mahenthiralingam, J. E. Moore, K. E. A. Dunbar, A. K. Webb, M. E. Dodd, S. L. Martin, B. C. Millar, C. J. Scott, M. Crowe, and J. S. Elborn. 2001. PCR-based detection and identification of Burkholderia cepacia complex pathogens in sputum from cystic fibrosis patients. J. Clin. Microbiol. 39:4247-4255.
-
(2001)
J. Clin. Microbiol.
, vol.39
, pp. 4247-4255
-
-
McDowell, A.1
Mahenthiralingam, E.2
Moore, J.E.3
Dunbar, K.E.A.4
Webb, A.K.5
Dodd, M.E.6
Martin, S.L.7
Millar, B.C.8
Scott, C.J.9
Crowe, M.10
Elborn, J.S.11
-
29
-
-
0030036446
-
Phylogenetic compositions of bacterioplankton from two California estuaries compared by denaturing gradient gel electrophoresis of 16S rDNA fragments
-
Murray, A. E., J. T. Hollibaugh, and C. Orrego. 1996. Phylogenetic compositions of bacterioplankton from two California estuaries compared by denaturing gradient gel electrophoresis of 16S rDNA fragments. Appl. Environ. Microbiol. 62:2676-2680.
-
(1996)
Appl. Environ. Microbiol.
, vol.62
, pp. 2676-2680
-
-
Murray, A.E.1
Hollibaugh, J.T.2
Orrego, C.3
-
30
-
-
0024553747
-
Rapid extraction of bacterial genomic DNA with guanidium thiocyanate
-
Pitcher, D. G., N. A. Saunders, and R. J. Owen. 1989. Rapid extraction of bacterial genomic DNA with guanidium thiocyanate. Lett. Appl. Microbiol. 8:151-156.
-
(1989)
Lett. Appl. Microbiol.
, vol.8
, pp. 151-156
-
-
Pitcher, D.G.1
Saunders, N.A.2
Owen, R.J.3
-
31
-
-
0032752660
-
Novel bacterium isolated from a lung transplant patient with cystic fibrosis
-
Pitulle, C., D. M. Citron, B. Bochner, R. Barbers, and M. D. Appleman. 1999. Novel bacterium isolated from a lung transplant patient with cystic fibrosis. J. Clin. Microbiol. 37:3851-3855.
-
(1999)
J. Clin. Microbiol.
, vol.37
, pp. 3851-3855
-
-
Pitulle, C.1
Citron, D.M.2
Bochner, B.3
Barbers, R.4
Appleman, M.D.5
-
32
-
-
0032759329
-
Molecular analysis of the microbial diversity present in the colonic wall, colonic lumen, and cecal lumen of a pig
-
Pryde, S. E., A. J. Richardson, C. S. Stewart, and H. J. Flint. 1999. Molecular analysis of the microbial diversity present in the colonic wall, colonic lumen, and cecal lumen of a pig. Appl. Environ. Microbiol. 65:5372-5377.
-
(1999)
Appl. Environ. Microbiol.
, vol.65
, pp. 5372-5377
-
-
Pryde, S.E.1
Richardson, A.J.2
Stewart, C.S.3
Flint, H.J.4
-
33
-
-
0034126356
-
Use of length heterogeneity PCR and fatty acid methyl ester profiles to characterize microbial communities in soil
-
Ritchie, N. J., M. E. Schutter, R. P. Dick, and D. D. Myrold. 2000. Use of length heterogeneity PCR and fatty acid methyl ester profiles to characterize microbial communities in soil. Appl. Environ. Microbiol. 66:1668-1675.
-
(2000)
Appl. Environ. Microbiol.
, vol.66
, pp. 1668-1675
-
-
Ritchie, N.J.1
Schutter, M.E.2
Dick, R.P.3
Myrold, D.D.4
-
34
-
-
0034764166
-
Early pulmonary infection, inflammation, and clinical outcomes in infants with cystic fibrosis
-
Rosenfeld, M., R. L. Gibson, S. McNamara, J. Emerson, J. L. Burns, R. Castile, P. Hiatt, K. McCoy, C. B. Wilson, A. Inglis, A. Smith, T. R. Martin, and B. W. Ramsey. 2001. Early pulmonary infection, inflammation, and clinical outcomes in infants with cystic fibrosis. Pediatr. Pulm. 32:356-366.
-
(2001)
Pediatr. Pulm.
, vol.32
, pp. 356-366
-
-
Rosenfeld, M.1
Gibson, R.L.2
McNamara, S.3
Emerson, J.4
Burns, J.L.5
Castile, R.6
Hiatt, P.7
McCoy, K.8
Wilson, C.B.9
Inglis, A.10
Smith, A.11
Martin, T.R.12
Ramsey, B.W.13
-
35
-
-
0035680095
-
Application of T-RFLP analysis to the study of bacterial community structure in the rhizosphere
-
Sakai, M., N. Matsunaga, A. Matsuka, and S. Kanazawa. 2001. Application of T-RFLP analysis to the study of bacterial community structure in the rhizosphere. Soil Sci. Plant Nutr. 47:773-778.
-
(2001)
Soil Sci. Plant Nutr.
, vol.47
, pp. 773-778
-
-
Sakai, M.1
Matsunaga, N.2
Matsuka, A.3
Kanazawa, S.4
-
36
-
-
0031790538
-
Kinetic bias in estimates of coastal picoplankton community structure obtained by measurements of small-subunit rRNA gene PCR amplicon length heterogeneity
-
Suzuki, M., M. S. Rappe, and S. J. Giovannoni. 1998. Kinetic bias in estimates of coastal picoplankton community structure obtained by measurements of small-subunit rRNA gene PCR amplicon length heterogeneity. Appl. Environ. Microbiol. 64:4522-4529.
-
(1998)
Appl. Environ. Microbiol.
, vol.64
, pp. 4522-4529
-
-
Suzuki, M.1
Rappe, M.S.2
Giovannoni, S.J.3
-
37
-
-
0032839275
-
Cystic fibrosis: An inherited susceptibility to bacterial respiratory infections
-
Tümmler, B., and B. C. Kiewitz. 1999. Cystic fibrosis: an inherited susceptibility to bacterial respiratory infections. Mol. Med. Today 5:351-357.
-
(1999)
Mol. Med. Today
, vol.5
, pp. 351-357
-
-
Tümmler, B.1
Kiewitz, B.C.2
-
38
-
-
0033986769
-
Comparison of conventional and molecular methods for the detection of bacterial pathogens in sputum samples from cystic fibrosis patients
-
van Belkum, A., N. H. Renders, S. Smith, S. E. Overbeek, and H. A. Verbrugh. 2000. Comparison of conventional and molecular methods for the detection of bacterial pathogens in sputum samples from cystic fibrosis patients. FEMS Immunol. Med. Microbiol. 27:51-57.
-
(2000)
FEMS Immunol. Med. Microbiol.
, vol.27
, pp. 51-57
-
-
Van Belkum, A.1
Renders, N.H.2
Smith, S.3
Overbeek, S.E.4
Verbrugh, H.A.5
-
39
-
-
0345195995
-
Determination of microbial diversity in environmental samples: Pitfalls of PCR-based rRNA analysis
-
von Wintzingerode, F., U. B. Gobel, and E. Stackebrandt. 1997. Determination of microbial diversity in environmental samples: pitfalls of PCR-based rRNA analysis. FEMS Microbiol. Rev. 21:213-229.
-
(1997)
FEMS Microbiol. Rev.
, vol.21
, pp. 213-229
-
-
Von Wintzingerode, F.1
Gobel, U.B.2
Stackebrandt, E.3
-
40
-
-
0000026508
-
Cystic fibrosis
-
C. R. Sciver, A. L. Beaudet, W. S. Sly, and D. Valle (ed.). McGraw-Hill Professional, New York, N.Y.
-
Welsh, M. J., L. C. Tsui, T. F. Boat, and A. L. Beaudet. 1995. Cystic fibrosis, p. 3799-3876. In C. R. Sciver, A. L. Beaudet, W. S. Sly, and D. Valle (ed.), The metabolic and molecular bases of inherited disease. McGraw-Hill Professional, New York, N.Y.
-
(1995)
The Metabolic and Molecular Bases of Inherited Disease
, pp. 3799-3876
-
-
Welsh, M.J.1
Tsui, L.C.2
Boat, T.F.3
Beaudet, A.L.4
-
41
-
-
0031969024
-
Comparison of culture and PCR for detection of Burkholderia cepacia in sputum samples of patients with cystic fibrosis
-
Whitby, P. W., H. L. N. Dick, P. W. Preston III, D. E. Tullis, A. Matlow, and T. L. Stull. 1998. Comparison of culture and PCR for detection of Burkholderia cepacia in sputum samples of patients with cystic fibrosis. J. Clin. Microbiol. 36:1642-1645.
-
(1998)
J. Clin. Microbiol.
, vol.36
, pp. 1642-1645
-
-
Whitby, P.W.1
Dick, H.L.N.2
Preston P.W. III3
Tullis, D.E.4
Matlow, A.5
Stull, T.L.6
-
42
-
-
0033989530
-
Species-specific PCR as a tool for the identification of Burkholderia gladioli
-
Whitby, P. W., L. C. Pope, K. B. Carter, J. J. LiPuma, and T. L. Stull. 2000. Species-specific PCR as a tool for the identification of Burkholderia gladioli. J. Clin. Microbiol. 38:282-285.
-
(2000)
J. Clin. Microbiol.
, vol.38
, pp. 282-285
-
-
Whitby, P.W.1
Pope, L.C.2
Carter, K.B.3
LiPuma, J.J.4
Stull, T.L.5
|