Biophysical and structural analysis of a novel heme b iron ligation in the flavocytochrome cellobiose dehydrogenase

Journal of Biological Chemistry

Volumn 278, Issue 35, 2003, Pages 33224-33231

  Rotsaert, Frederik A J ^a   Hallberg, B Martin ^b,c   De Vries, Simon ^d   Moenne Loccoz, Pierre ^a   Divne, Christina ^c   Renganathan, V ^a   Gold, Michael H ^a  

^a OREGON HEALTH AND SCIENCE UNIVERSITY   (United States)

^b UPPSALA UNIVERSITY   (Sweden)

^c ALBANOVA UNIVERSITY CENTER   (Sweden)

^d DELFT UNIVERSITY OF TECHNOLOGY   (Netherlands)

Author keywords

[No Author keywords available]

Indexed keywords

CATALYSIS; DEGRADATION; ELECTROCHEMISTRY; FUNGI; POLYPEPTIDES; RAMAN SPECTROSCOPY;

LIGANDS;

ENZYMES;

BINDING PROTEIN; CARBON MONOXIDE; COORDINATION COMPOUND; CYTOCHROME; CYTOCHROME C; ENZYME VARIANT; FLAVOCYTOCHROME CELLOBIOSE DEHYDROGENASE; FUNGAL ENZYME; HEME; HEME B; HISTIDINE; IMIDAZOLE DERIVATIVE; IRON; LIGAND; LIGNOCELLULOSE; LINK PROTEIN; METHIONINE; MUTANT PROTEIN; NITROGEN DERIVATIVE; OXIDOREDUCTASE; PROTOPORPHYRIN; QUERCETIN; UNCLASSIFIED DRUG;

ACCELERATION; AMINO ACID SUBSTITUTION; ARTICLE; CATALYSIS; COMPLEX FORMATION; CONTROLLED STUDY; CRYSTAL STRUCTURE; DISSOCIATION; ELECTRIC POTENTIAL; ELECTROCHEMICAL ANALYSIS; ELECTRON TRANSPORT; ENZYMATIC DEGRADATION; ENZYME ACTIVITY; ENZYME ANALYSIS; ENZYME BINDING; ENZYME KINETICS; ENZYME MECHANISM; ENZYME STRUCTURE; GEOMETRY; NONHUMAN; OXIDATION REDUCTION REACTION; PRIORITY JOURNAL; PROTEIN DOMAIN; PROTEIN EXPRESSION; PROTEIN STABILITY; RAMAN SPECTROMETRY; ROOM TEMPERATURE; SITE DIRECTED MUTAGENESIS; STRUCTURE ANALYSIS; TEMPERATURE DEPENDENCE; WILD TYPE;

BLOTTING, WESTERN; CARBOHYDRATE DEHYDROGENASES; CRYSTALLOGRAPHY, X-RAY; CYTOCHROMES; ELECTROCHEMISTRY; ELECTRONS; ELECTROPHORESIS, POLYACRYLAMIDE GEL; HEME; HYDROGEN-ION CONCENTRATION; IRON; KINETICS; LIGANDS; MODELS, MOLECULAR; MUTAGENESIS, SITE-DIRECTED; MUTATION; OXIDATION-REDUCTION; OXYGEN; PHANEROCHAETE; PLASMIDS; PROTEIN CONFORMATION; PROTEIN STRUCTURE, TERTIARY; SPECTROPHOTOMETRY; SPECTRUM ANALYSIS, RAMAN;

FUNGI;

EID: 0042858238     PISSN: 00219258     EISSN: None     Source Type: Journal    
DOI: 10.1074/jbc.M302653200     Document Type: Article

References (60)

1. Henriksson, G., Johansson, G., and Pettersson, G. (2000) J. Biotechnol. 78, 93-113
2. Li, B., Nagalla, S. R., and Renganathan, V. (1996) Appl. Environ. Microbiol. 62, 1329-1335
3. Raices, M., Paifer, E., Cremata, J., Montesino, R., Stahlberg, J., Divne, C., Szabo Istvan, J., Henriksson, G., Johansson, G., and Pettersson, G. (1995) FEBS Lett. 369, 233-238
4. Cox, M. C., Rogers, M. S., Cheesman, M., Jones, G. D., Thomson, A. J., Wilson, M. T., and Moore, G. R. (1992) FEBS Lett. 307, 233-236
5. Cohen, J. D., Bao, W., Renganathan, V., Subramaniam, S. S., and Loehr, T. M. (1997) Arch. Biochem. Biophys. 341, 321-328
6. Higham, C. W., Gordon-Smith, D., Dempsey, C. E., and Wood, P. M. (1994) FEBS Lett. 351, 128-132
7. Hallberg, B. M., Bergfors, T., Backbro, K., Pettersson, G., Herriksson, G., and Divne, C. (2000) Structure 8, 79-88
8. Rotsaert, F. A., Li, B., Renganathan, V., and Gold, M. H. (2001)Arch. Biochem. Biophys. 390, 206-214
9. Miles, C. S., Manson, F. D., Reid, G. A., and Chapman, S. K. (1993) Biochim. Biophys. Acta 1202, 82-86
10. Hampsey, D. M., Das, G., and Sherman, F. (1988) FEBS Lett. 231, 275-283
11. Davis, C. A., Dhawan, I. K., Johnson, M. K., and Barber, M. J. (2002) Arch. Biochem. Biophys. 400, 63-75
12. Beck von Bodman, S., Schuler, M. A., Jollie, D. R., and Sligar, S. G. (1986) Proc. Natl. Acad. Sci. U. S. A. 83, 9443-9447
13. Aubert, C., Guerlesquin, F., Bianco, P., Leroy, G., Tron, P., Stetter, K. O., and Bruschi, M. (2001) Biochemistry 40, 13690-13698
14. Darrouzet, E., Mandaci, S., Li, J., Qin, H., Knaff, D. B., and Daldal, F. (1999) Biochemistry 38, 7908-7917
15. Miller, G. T., Zhang, B., Hardman, J. K., and Timkovich, R. (2000) Biochemistry 39, 9010-9017
16. Raphael, A. L., and Gray, H. B. (1989) Proteins 6, 338-340
17. Akileswaran, L., Alic, M., Clark, E. K., Hornick, J. L., and Gold, M. H. (1993) Curr. Genet. 23, 351-356
18. Alic, M., Clark, E. K., Kornegay, J. R., and Gold, M. H. (1990) Curr. Genet. 17, 305-311
19. Li, B., Rotsaert, F. A. J., Gold, M. H., and Renganathan, V. (2000) Biochem. Biophys. Res. Commun. 270, 141-146
20. Sollewijn Gelpke, M. D., Mayfield-Gambill, M., Cereghino, G. P. L., and Gold, M. H. (1999) Appl. Environ. Microbiol. 65, 1670-1674
21. Alic, M., Kornegay, J. R., Pribnow, D., and Gold, M. H. (1989) Appl. Environ. Microbiol. 55, 406-411
22. Alic, M., Mayfield, M. B., Akileswaran, L., and Gold, M. H. (1991) Curr. Genet. 19, 491-494
23. Henriksson, G., Pettersson, G., Johansson, G., Ruiz, A., and Uzcategui, E. (1991) Eur. J. Biochem. 196, 101-106
24. Laemmli, U. K. (1970) Nature 227, 680-685
25. Smith, P. K., Krohn, R. I., Hermanson, G. T., Mallia, A. K., Gartner, F. H., Provenzano, M. D., Fujimoto, E. K., Goeke, N. M., Olson, B. J., and Klenk, D. C. (1985) Anal. Biochem. 150, 76-85
26. Berry, E. A., and Trumpower, B. L. (1987) Anal. Biochem. 161, 1-15
27. Dutton, P. L. (1978) Methods Enzymol. 54, 411-435
28. McPherson, A. (1982) Preparation and Analysis of Protein Chrystals, John Wiley & Sons, New York
29. Powell, H. R. (1999) Acta Crystallogr. Sect. D Biol. Crystallogr. 55, 1690-1695
30. Evans, P. R. (1993) in Proceedings of CCP4 Sutdy Weekend on Data Collection and Processing (Sawyer, L., Isaacs, N., and Bailey, S., eds) pp. 114-122, SERC Daresbury Lab., Warrington, UK
31. Brunger, A. T., Adams, P. D., Clore, G. M., DeLano, W. L., Gros, P., Grosse-Kunstleve, R. W., Jiang, J. S. Kuszewski, J., Nilges, M., Pannu, N. S., Read, R. J., Rice, L. M., Simonson, T., and Warren, G. L. (1998) Acta Crystallogr. Sect. D Biol. Crystallogr. 54, 905-921
32. Jones, T. A., Zou, J. Y., Cowan, S. W., and Kjeldgaard, M. (1991) Acta Crystallogr. Sect. A 47, 110-119
33. Murshudov, G. N., Vagin, A. A., and Dodson, E. J. (1997) Acta Crystallogr. Sect. D Biol. Crystallogr. 53, 240-255
34. Kleywegt, G. J. (2000) Acta Crystallogr. Sect. D Biol. Crystallogr. 56, 249-265
35. Moore, G. R., and Pettigrew, G. W. (eds) (1990) Cytochrome c: Evolutionary, Structural, and Physiochemical Aspects, Springer-Ver]ag, Berlin
36. Spiro, T. G., and Li, X. (1988) in Biological Application of Raman Spectroscopy (Spiro, T. G., ed) Vol. 3, pp. 1-37, John Wiley & Sons, New York
37. Kremer, S. M., and Wood, P. M. (1992) Eur. J. Biochem. 205, 133-138
38. Igarashi, K., Verhagen, M. F., Samejima, M., Schulein, M., Eriksson, K. E., and Nishino, T. (1999) J. Biol. Chem. 274, 3338-3344
39. Moore, G. R., Williams, R. J., Peterson, J., Thomson, A. J., and Mathews, F. S. (1985) Biochim. Biophys. Acta 829, 83-96
40. Reid, L. S., Taniguschi, F. T. Gray, H. B., and Mauk, A. G. (1982) J. Am. Chem. Soc. 104, 7516-7519
41. Iverson, T. M., Arciero, D. M., Hsu, B. T., Logan, M. S., Hooper, A. B., and Rees, D. C. (1998) Nat. Struct. Biol. 5, 1005-1012
42. Iverson, T. M., Arciero, D. M. Hooper, A. B., and Rees, D. C. (2001) J. Biol. Inorg. Chem. 6, 390-397
43. Dou, Y., Admiraal, S. J., Ikeda-Saito, M., Krzywda, S., Wilkinson, A. J., Li, T., Olson, J. S., Prince, R. C., Pickering, I. J., and George, G. N. (1995) J. Biol. Chem. 270, 15993-16001
44. Qin, J., La Mar, G. N., Dou, Y., Admiraal, S. J., and Ikeda-Saito, M. (1994) J. Biol. Chem. 269, 1083-1090
45. Harbury, H. A., Cronin, J. R., Fanger, M. W. Hettinger, T. P., Murphy, A. J., Myer, Y. P., and Vinogradov, S. N. (1965) Proc. Natl. Acad. Sci. U. S. A. 54, 1658-1664
46. Gunner, M. R., Alexov, E., Torres, E., and Lipovaca, S. (1997) J. Biol. Inorg. Chem. 2, 126-143
47. Henriksson, G., Johansson, G., and Pettersson, G. (1993) Biochim. Biophys. Acta 1144, 184-190
48. Delgado-Nixon, V. M., Gonzalez, G., and Gilles-Gonzalez, M. A. (2000) Biochemistry 39, 2685-2691
49. Gonzalez, G., Dioum, E. M., Bertolucci, C. M., Tomita, T., Ikeda-Saito, M., Cheesman, M. R. Watmough, N. J., and Gilles-Gonzalez, M. A. (2002) Biochemistry 41, 8414-8421
50. Zaric, S. D., Popovic, D. M., and Knapp, E. W. (2001) Biochemistry 40, 7914-7928
51. Ozols, J., and Strittmatter, P. J. (1964) J. Biol. Chem. 239, 1018-1023
52. Itagaki, E., and Hager, L. P. (1966) J. Biol. Chem. 241, 3687-3695
53. Tamura, M., Asakura, T., and Yonetani, T. (1972) Biochim. Biophys. Acta 268, 292-304
54. Antonini, E., and Brunori, B. (1971) Hemoglobin and Myoglobin in Their Reaction with Ligands, North-Holland Publishing Co., Amsterdam, The Netherlands
55. Lloyd, E., Hildebrand, D. P., Tu, K. M., and Mauk, A. G. (1995) J. Am. Chem. Soc. 117, 6433-6438
56. Choi, S., Spiro, T. G., Langry, K. C., Smith, K. M., Budd, D. L. and LaMar, G. N. (1982) J. Am. Chem. Soc. 104, 4345-4351
57. Spiro, T. G., Stong, J. D., and Stein, P. (1979) J. Am. Chem. Soc. 101, 2648-2655
58. Ramakrishnan, C., and Ramachandran, G. N. (1965) Biophys. J. 5, 909-933
59. Kleywegt, G. J., and Jones, T. A. (1996) Structure 4, 1395-1400
60. Igarashi, K., Momohara, I., Nishino T., and Samejima, M. (2002) Biochem. J. 365, 521-526