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Volumn 55, Issue 5, 2003, Pages 307-314

Evolutionarily conserved pattern of gene segment usage within the mammalian TCRβ locus

Author keywords

Evolution; Recombination signal sequence; Repertoire; T cell receptor; VDJ recombination

Indexed keywords

RECOMBINASE; SIGNAL PEPTIDE; T LYMPHOCYTE RECEPTOR BETA CHAIN;

EID: 0042831182     PISSN: 00937711     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00251-003-0577-6     Document Type: Article
Times cited : (6)

References (59)
  • 2
    • 0032951536 scopus 로고    scopus 로고
    • Regional variation in the lamina propria T-cell receptor V beta repertoire in normal human colon
    • Bennet JD, Brown WR, Kotzin BL (1999) Regional variation in the lamina propria T-cell receptor V beta repertoire in normal human colon. Clin Immunol 90:38-46
    • (1999) Clin Immunol , vol.90 , pp. 38-46
    • Bennet, J.D.1    Brown, W.R.2    Kotzin, B.L.3
  • 3
    • 0035172347 scopus 로고    scopus 로고
    • Most alpha/beta T cell receptor diversity is due to terminal deoxynucleotidyl transferase
    • Cabaniols JP, Fazilleau N, Casrouge A, Kourilsky P, Kanellopoulos JM (2001) Most alpha/beta T cell receptor diversity is due to terminal deoxynucleotidyl transferase. J Exp Med 194:1385-1390
    • (2001) J Exp Med , vol.194 , pp. 1385-1390
    • Cabaniols, J.P.1    Fazilleau, N.2    Casrouge, A.3    Kourilsky, P.4    Kanellopoulos, J.M.5
  • 5
    • 0029558857 scopus 로고
    • Comparison of human and mouse T-cell receptor variable gene segment subfamilies
    • Clark SP, Arden B, Kabelitz D, Mak TW (1995) Comparison of human and mouse T-cell receptor variable gene segment subfamilies. Immunogenetics 42:531-540
    • (1995) Immunogenetics , vol.42 , pp. 531-540
    • Clark, S.P.1    Arden, B.2    Kabelitz, D.3    Mak, T.W.4
  • 6
    • 0023720148 scopus 로고
    • T-cell antigen receptor genes and T-cell recognition
    • Davis MM, Bjorkman PJ (1988) T-cell antigen receptor genes and T-cell recognition. Nature 334:395-402
    • (1988) Nature , vol.334 , pp. 395-402
    • Davis, M.M.1    Bjorkman, P.J.2
  • 8
    • 0016440236 scopus 로고
    • H-2 compatibility is required for T-cell-mediated lysis of target cells infected with lymphocytic choriomeningitis virus
    • Doherty PC, Zinkernagel RM (1975) H-2 compatibility is required for T-cell-mediated lysis of target cells infected with lymphocytic choriomeningitis virus. J Exp Med 141:502-507
    • (1975) J Exp Med , vol.141 , pp. 502-507
    • Doherty, P.C.1    Zinkernagel, R.M.2
  • 10
    • 0025765659 scopus 로고
    • Junctional sequences of fetal T cell receptor beta chains have few N regions
    • Feeney AJ (1991) Junctional sequences of fetal T cell receptor beta chains have few N regions. J Exp Med 174:115-124
    • (1991) J Exp Med , vol.174 , pp. 115-124
    • Feeney, A.J.1
  • 11
    • 0033918155 scopus 로고    scopus 로고
    • B-cell repertoire formation: Role of the recombination signal sequence in non-random V segment utilization
    • Feeney AJ, Tang A, Ogwaro KM (2000) B-cell repertoire formation: role of the recombination signal sequence in non-random V segment utilization. Immunol Rev 175:59-69
    • (2000) Immunol Rev , vol.175 , pp. 59-69
    • Feeney, A.J.1    Tang, A.2    Ogwaro, K.M.3
  • 12
    • 0000461280 scopus 로고
    • Confidence limits on phylogenies: An approach using the bootstrap
    • Felsenstein J (1985) Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39:783-791
    • (1985) Evolution , vol.39 , pp. 783-791
    • Felsenstein, J.1
  • 15
    • 0026687789 scopus 로고
    • The basis for the mechanistic bias for deletional over inversional V(D)J recombination
    • Gauss GH, Lieber MR (1992) The basis for the mechanistic bias for deletional over inversional V(D)J recombination. Genes Dev 6:1553-1561
    • (1992) Genes Dev , vol.6 , pp. 1553-1561
    • Gauss, G.H.1    Lieber, M.R.2
  • 16
    • 0035997348 scopus 로고    scopus 로고
    • V(D)J recombination: Rag proteins, repair factors, and regulation
    • Gellert M (2002) V(D)J recombination: rag proteins, repair factors, and regulation, Annu Rev Biochem 71:101-32
    • (2002) Annu Rev Biochem , vol.71 , pp. 101-132
    • Gellert, M.1
  • 18
    • 0033581935 scopus 로고    scopus 로고
    • Selecting and maintaining a diverse T-cell repertoire
    • Goldrath AW, Bevan MJ (1999) Selecting and maintaining a diverse T-cell repertoire. Nature 402:255-262
    • (1999) Nature , vol.402 , pp. 255-262
    • Goldrath, A.W.1    Bevan, M.J.2
  • 20
    • 0034633682 scopus 로고    scopus 로고
    • Evolution of the recombination signal sequences in the Ig heavy-chain variable region locus of mammals
    • Hassanin A, Golub R, Lewis SM, Wu GE (2000) Evolution of the recombination signal sequences in the Ig heavy-chain variable region locus of mammals. Proc Natl Acad Sci USA 97:11415-11420
    • (2000) Proc Natl Acad Sci USA , vol.97 , pp. 11415-11420
    • Hassanin, A.1    Golub, R.2    Lewis, S.M.3    Wu, G.E.4
  • 21
    • 0026562079 scopus 로고
    • The number of replications needed for accurate estimation of the bootstrap P value in phylogenetic studies
    • Hedges SB (1992) The number of replications needed for accurate estimation of the bootstrap P value in phylogenetic studies. Mol Biol Evol 9:366-369
    • (1992) Mol Biol Evol , vol.9 , pp. 366-369
    • Hedges, S.B.1
  • 22
    • 0024691453 scopus 로고
    • V(D)J recombination: A functional definition of the joining signals
    • Hesse JE, Lieber MR, Mizuuchi K, Gellert M (1989) V(D)J recombination: a functional definition of the joining signals. Genes Dev 3:1053-1061
    • (1989) Genes Dev , vol.3 , pp. 1053-1061
    • Hesse, J.E.1    Lieber, M.R.2    Mizuuchi, K.3    Gellert, M.4
  • 23
    • 0001937634 scopus 로고
    • The somatic generation of immune regulation
    • Jerne NK (1971) The somatic generation of immune regulation. Eur J Immunol 1:1-9
    • (1971) Eur J Immunol , vol.1 , pp. 1-9
    • Jerne, N.K.1
  • 24
    • 0023663430 scopus 로고
    • T cell tolerance by clonal elimination in the thymus
    • Kappler JW, Roehm N, Marrack P (1987) T cell tolerance by clonal elimination in the thymus. Cell 49:273-280
    • (1987) Cell , vol.49 , pp. 273-280
    • Kappler, J.W.1    Roehm, N.2    Marrack, P.3
  • 25
    • 0028168231 scopus 로고
    • Comparison of the J beta gene usage among different T-cell receptor V beta families in spleens of C57BL/6 mice
    • Kato T, Suzuki S, Sasakawa H, Masuko K, Ikeda Y, Nishioka K, Yamamoto K (1994) Comparison of the J beta gene usage among different T-cell receptor V beta families in spleens of C57BL/6 mice. Eur J Immunol 24:2410-2414
    • (1994) Eur J Immunol , vol.24 , pp. 2410-2414
    • Kato, T.1    Suzuki, S.2    Sasakawa, H.3    Masuko, K.4    Ikeda, Y.5    Nishioka, K.6    Yamamoto, K.7
  • 26
    • 0025195145 scopus 로고
    • The major histocompatibility complex and the quest for origins
    • Klein J, Takahata N (1990) The major histocompatibility complex and the quest for origins. Immunol Rev 113:5-25
    • (1990) Immunol Rev , vol.113 , pp. 5-25
    • Klein, J.1    Takahata, N.2
  • 27
    • 0024791338 scopus 로고
    • Junctional sequences of T-cell receptor gamma delta genes: Implications for gamma delta T cell lineages and for a novel intermediate of V-(D)-J joining
    • Lafaille JJ, DeCloux A, Bonneville M, Takagaki Y, Tonegawa S (1989) Junctional sequences of T-cell receptor gamma delta genes: implications for gamma delta T cell lineages and for a novel intermediate of V-(D)-J joining. Cell 59:859-870
    • (1989) Cell , vol.59 , pp. 859-870
    • Lafaille, J.J.1    DeCloux, A.2    Bonneville, M.3    Takagaki, Y.4    Tonegawa, S.5
  • 28
    • 0034544507 scopus 로고    scopus 로고
    • Vαβ T cell repertoire of CD8(+) splenocytes selected on nonpolymorphic MHC class I molecules
    • Laouini D, Casrouge A, Dalle S, Lemonnier F, Kourilsky P, Kanellopoulos J (2000) Vαβ T cell repertoire of CD8(+) splenocytes selected on nonpolymorphic MHC class I molecules. J Immunol 165:6381-6386
    • (2000) J Immunol , vol.165 , pp. 6381-6386
    • Laouini, D.1    Casrouge, A.2    Dalle, S.3    Lemonnier, F.4    Kourilsky, P.5    Kanellopoulos, J.6
  • 29
    • 0033151878 scopus 로고    scopus 로고
    • The role of components of recombination signal sequences in immunoglobulin gene segment usage: A V81x model
    • Larijani M, Yu CC, Golub R, Lam QL, Wu GE (1999) The role of components of recombination signal sequences in immunoglobulin gene segment usage: a V81x model. Nucleic Acids Res 27:2304-2309
    • (1999) Nucleic Acids Res , vol.27 , pp. 2304-2309
    • Larijani, M.1    Yu, C.C.2    Golub, R.3    Lam, Q.L.4    Wu, G.E.5
  • 31
    • 0035500156 scopus 로고    scopus 로고
    • Somatic generation of antigen-receptor diversity: A reprise
    • Livak F, Petrie HT (2001) Somatic generation of antigen-receptor diversity: a reprise. Trends Immunol 22:608-612
    • (2001) Trends Immunol , vol.22 , pp. 608-612
    • Livak, F.1    Petrie, H.T.2
  • 32
    • 0034675843 scopus 로고    scopus 로고
    • Genetic modulation of T cell receptor gene segment usage during somatic recombination
    • Livak F, Burtrum DB, Rowen L, Schatz DG, Petrie HT (2000) Genetic modulation of T cell receptor gene segment usage during somatic recombination. J Exp Med 192:1191-1196
    • (2000) J Exp Med , vol.192 , pp. 1191-1196
    • Livak, F.1    Burtrum, D.B.2    Rowen, L.3    Schatz, D.G.4    Petrie, H.T.5
  • 33
    • 0027168220 scopus 로고
    • Rearrangement and diversity of T cell receptor beta chain genes in thymocytes: A critical role for the beta chain in development
    • Mallick CA, Dudley EC, Viney JL, Owen MJ, Hayday AC (1993) Rearrangement and diversity of T cell receptor beta chain genes in thymocytes: a critical role for the beta chain in development. Cell 73:513-519
    • (1993) Cell , vol.73 , pp. 513-519
    • Mallick, C.A.1    Dudley, E.C.2    Viney, J.L.3    Owen, M.J.4    Hayday, A.C.5
  • 35
    • 0032757547 scopus 로고    scopus 로고
    • Non-productive human TCR beta chain genes represent V-D-J diversity before selection upon function: Insight into biased usage of TCRBD and TCRBJ genes and diversity of CDR3 region length
    • Manfras B J, Terjung D, Boehm BO (1999) Non-productive human TCR beta chain genes represent V-D-J diversity before selection upon function: insight into biased usage of TCRBD and TCRBJ genes and diversity of CDR3 region length. Hum Immunol 60:1090-100
    • (1999) Hum Immunol , vol.60 , pp. 1090-1100
    • Manfras, B.J.1    Terjung, D.2    Boehm, B.O.3
  • 38
    • 0032482172 scopus 로고    scopus 로고
    • Sequence of the spacer in the recombination signal sequence affects V(D) J rearrangement frequency and correlates with nonrandom Vkappa usage in vivo
    • Nadel B, Tang A, Escuro G, Lugo G, Feeney AJ (1998a) Sequence of the spacer in the recombination signal sequence affects V(D)J rearrangement frequency and correlates with nonrandom Vkappa usage in vivo. J Exp Med 187:1495-1503
    • (1998) J Exp Med , vol.187 , pp. 1495-1503
    • Nadel, B.1    Tang, A.2    Escuro, G.3    Lugo, G.4    Feeney, A.J.5
  • 39
    • 0032400975 scopus 로고    scopus 로고
    • Decreased frequency of rearrangement due to the synergistic effect of nucleotide changes in the heptamer and nonamer of the recombination signal sequence of the V kappa gene A2b, which is associated with increased susceptibility of Navajos to Haemophilus influenzae type b disease
    • Nadel B, Tang A, Lugo G, Love V, Escuro G, Feeney AJ (1998b) Decreased frequency of rearrangement due to the synergistic effect of nucleotide changes in the heptamer and nonamer of the recombination signal sequence of the V kappa gene A2b, which is associated with increased susceptibility of Navajos to Haemophilus influenzae type b disease. J Immunol 161:6068-6073
    • (1998) J Immunol , vol.161 , pp. 6068-6073
    • Nadel, B.1    Tang, A.2    Lugo, G.3    Love, V.4    Escuro, G.5    Feeney, A.J.6
  • 40
    • 0025021670 scopus 로고
    • Role of self-peptides in positively selecting the T-cell repertoire
    • Nikolic-Zugic J, Bevan MJ (1990) Role of self-peptides in positively selecting the T-cell repertoire. Nature 344:65-67
    • (1990) Nature , vol.344 , pp. 65-67
    • Nikolic-Zugic, J.1    Bevan, M.J.2
  • 41
    • 0030203863 scopus 로고    scopus 로고
    • TREEVIEW: An application to display phylogenetic trees on personal computers
    • Page RDM (1996) TREEVIEW: an application to display phylogenetic trees on personal computers. Comput Appl Biosci 12:357-358
    • (1996) Comput Appl Biosci , vol.12 , pp. 357-358
    • Page, R.D.M.1
  • 42
    • 0028351920 scopus 로고
    • Level of human TCRBV3S1 (Vfi3) expression correlates with allelic polymorphism in the spacer region of the recombination signal sequence
    • Posnett DN, Vissinga CS, Pambuccian C, Wei S, Robinson MA, Kostyu D, Concannon P (1994) Level of human TCRBV3S1 (Vfi3) expression correlates with allelic polymorphism in the spacer region of the recombination signal sequence. J Exp Med 179:1707-1711
    • (1994) J Exp Med , vol.179 , pp. 1707-1711
    • Posnett, D.N.1    Vissinga, C.S.2    Pambuccian, C.3    Wei, S.4    Robinson, M.A.5    Kostyu, D.6    Concannon, P.7
  • 43
    • 0025788230 scopus 로고
    • Mouse κ-light-chain recombination signal sequences mediate recombination more frequently than do those of λ-light chain
    • Ramsden DA, Wu GE (1991) Mouse κ-light-chain recombination signal sequences mediate recombination more frequently than do those of λ-light chain. Proc Natl Acad Sci USA 88:10721-10725
    • (1991) Proc Natl Acad Sci USA , vol.88 , pp. 10721-10725
    • Ramsden, D.A.1    Wu, G.E.2
  • 44
    • 0028291092 scopus 로고
    • Conservation of sequence in recombination signal sequence spacers
    • Ramsden DA, Baetz K, Wu GE (1994) Conservation of sequence in recombination signal sequence spacers. Nucleic Acids Res 22:1785-1796
    • (1994) Nucleic Acids Res , vol.22 , pp. 1785-1796
    • Ramsden, D.A.1    Baetz, K.2    Wu, G.E.3
  • 45
    • 0030017526 scopus 로고    scopus 로고
    • The complete 685-kilobase DNA sequence of the human beta T-cell receptor locus
    • Rowen L, Koop BF, Hood L (1996) The complete 685-kilobase DNA sequence of the human beta T-cell receptor locus. Science 272:1755-1762
    • (1996) Science , vol.272 , pp. 1755-1762
    • Rowen, L.1    Koop, B.F.2    Hood, L.3
  • 46
    • 0023375195 scopus 로고
    • The neighbor-joining method: A new method for reconstructing phylogenetic trees
    • Saitou N, Nei M (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406-425
    • (1987) Mol Biol Evol , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 48
    • 0030959068 scopus 로고    scopus 로고
    • Initiation of V(D)J recombination in vivo: Role of recombination signal sequences in formation of single and paired double-strand breaks
    • Steen SB, Gomelsky L, Speidel SL, Roth D B(1997) Initiation of V(D)J recombination in vivo: role of recombination signal sequences in formation of single and paired double-strand breaks. EMBO J 16:2656-2664
    • (1997) EMBO J , vol.16 , pp. 2656-2664
    • Steen, S.B.1    Gomelsky, L.2    Speidel, S.L.3    Roth, D.B.4
  • 50
    • 0031574072 scopus 로고    scopus 로고
    • The CLUSTAL-X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
    • Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG (1997) The CLUSTAL-X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25:4876-4882
    • (1997) Nucleic Acids Res , vol.25 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeanmougin, F.4    Higgins, D.G.5
  • 51
    • 0037017376 scopus 로고    scopus 로고
    • Restrictions limiting the generation of DNA double strand breaks during chromosomal V(D)J recombination
    • Tillman RE, Wooley AL, Hughes MM, Wehrly TD, Swat W, Sleckman BP (2002) Restrictions limiting the generation of DNA double strand breaks during chromosomal V(D)J recombination. J Exp Med 195:309-316
    • (2002) J Exp Med , vol.195 , pp. 309-316
    • Tillman, R.E.1    Wooley, A.L.2    Hughes, M.M.3    Wehrly, T.D.4    Swat, W.5    Sleckman, B.P.6
  • 52
    • 0020534965 scopus 로고
    • Somatic generation of antibody diversity
    • Tonegawa S (1983) Somatic generation of antibody diversity. Nature 302:575-581
    • (1983) Nature , vol.302 , pp. 575-581
    • Tonegawa, S.1
  • 54
    • 0029447502 scopus 로고
    • Nomenclature for T-cell receptor (TCR) gene segments of the immune system
    • WHO-IUIS Nomenclature Sub-Committee on TCR Designation (1995) Nomenclature for T-cell receptor (TCR) gene segments of the immune system. Immunogenetics 42:451-453
    • (1995) Immunogenetics , vol.42 , pp. 451-453
  • 55
    • 0035160218 scopus 로고    scopus 로고
    • Biased Vβ usage in immature thymocytes is independent of DJβ proximity and pTα pairing
    • Wilson A, Marechal C, MacDonald HR (2001) Biased Vβ usage in immature thymocytes is independent of DJβ proximity and pTα pairing. J Immunol 166:51-57
    • (2001) J Immunol , vol.166 , pp. 51-57
    • Wilson, A.1    Marechal, C.2    MacDonald, H.R.3
  • 56
    • 0037243276 scopus 로고    scopus 로고
    • Dramatically increased rearrangement and peripheral representation of Vbeta14 driven by the 3′Dbeta1 recombination signal sequence
    • Wu C, Bassing CH, Jung D, Woodman BB, Foy D, Alt FW (2003) Dramatically increased rearrangement and peripheral representation of Vbeta14 driven by the 3′Dbeta1 recombination signal sequence. Immunity 18:75-85
    • (2003) Immunity , vol.18 , pp. 75-85
    • Wu, C.1    Bassing, C.H.2    Jung, D.3    Woodman, B.B.4    Foy, D.5    Alt, F.W.6
  • 57
    • 0036682133 scopus 로고    scopus 로고
    • Two-step binding mechanism for T-cell receptor recognition of peptide MHC
    • Wu LC, Tuot DS, Lyons DS, Garcia KC, Davis MM (2002) Two-step binding mechanism for T-cell receptor recognition of peptide MHC. Nature 418:552-556
    • (2002) Nature , vol.418 , pp. 552-556
    • Wu, L.C.1    Tuot, D.S.2    Lyons, D.S.3    Garcia, K.C.4    Davis, M.M.5
  • 58
    • 0005444226 scopus 로고    scopus 로고
    • The cleavage efficiency of the human immunoglobulin heavy chain VH elements by the RAG complex: Implications for the immune repertoire
    • Yu K, Taghva A, Lieber MR (2001) The cleavage efficiency of the human immunoglobulin heavy chain VH elements by the RAG complex: Implications for the immune repertoire. J Biol Chem 5:5
    • (2001) J Biol Chem , vol.5 , pp. 5
    • Yu, K.1    Taghva, A.2    Lieber, M.R.3
  • 59
    • 0030935007 scopus 로고    scopus 로고
    • The MHC reactivity of the T cell repertoire prior to positive and negative selection
    • Zerrahn J, Held W, Raulet DH (1997) The MHC reactivity of the T cell repertoire prior to positive and negative selection. Cell 88:627-636
    • (1997) Cell , vol.88 , pp. 627-636
    • Zerrahn, J.1    Held, W.2    Raulet, D.H.3


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