Cloning and characterization of a novel Hsp100/Clp gene (osClpD) from Oryza sativa

DNA Sequence - Journal of DNA Sequencing and Mapping

Volumn 14, Issue 4, 2003, Pages 285-293

  Shen, Guo An ^a   Pang, Yong Zhen ^a   Lin, Chang Fa ^a   Wei, Chun ^a   Qian, Xiao Yin ^a   Jiang, Li Zhi ^a   Du, Xi Ling ^a   Li, Ke Gui ^a   Attia, Kotb ^a   Yang, Jin Shui ^a  

^a FUDAN UNIVERSITY   (China)

Author keywords

Hsp100 Clp; MRNA; Oryza sativa; OsClpD

Indexed keywords

ADENOSINE TRIPHOSPHATASE; ATP DEPENDENT ENDOPROTEASE TI; ATP-DEPENDENT ENDOPROTEASE TI; COMPLEMENTARY DNA; GENE PRODUCT; HEAT SHOCK PROTEIN; HEAT SHOCK PROTEIN 100; OSCLPD PROTEIN; PRIMER DNA; SERINE PROTEINASE; UNCLASSIFIED DRUG;

AMINO ACID SEQUENCE; ANALYTIC METHOD; ARTICLE; CLUSTER ANALYSIS; COMPARATIVE STUDY; DESICCATION; DNA SEQUENCE; GENE; GENE EXPRESSION; GENE ISOLATION; GENETIC ANALYSIS; GENETICS; MOLECULAR CLONING; MOLECULAR GENETICS; NONHUMAN; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; OSCLPD GENE; PHYLOGENETIC TREE; PHYLOGENY; POLYMERASE CHAIN REACTION; RICE; STRESS; TEMPERATURE; WATER DEFICIT;

ADENOSINE TRIPHOSPHATASES; AMINO ACID SEQUENCE; BASE SEQUENCE; CLUSTER ANALYSIS; DESICCATION; DNA PRIMERS; DNA, COMPLEMENTARY; ENDOPEPTIDASE CLP; MOLECULAR SEQUENCE DATA; ORYZA SATIVA; PHYLOGENY; POLYMERASE CHAIN REACTION; SEQUENCE ANALYSIS, DNA; SERINE ENDOPEPTIDASES; TEMPERATURE;

EMBRYOPHYTA; ORYZA SATIVA;

EID: 0042672577     PISSN: 10425179     EISSN: None     Source Type: Journal    
DOI: 10.1080/1085566031000141153     Document Type: Article

References (21)

1. Adam, Z. and Clarke, A.K. (2002) "Cutting edge of chloroplast proteolysis", Trends in Plant Science 7, 451-456.
2. Boston, R.S., Viitanen, P.V. and Vierling, E. (1996) "Molecular chaperones and protein folding in plants", Plant Molecular Biology 32, 191-222.
3. Chou, Q. (1992) "Minimizing deletion mutagenesis artifact during Taq DNA polymerase PCR by E. Coli SSB", Nucleic Acids Research 20, 4371.
4. D'Aquila, R.T., Bechtel, L.J., Videler, J.A., Eron, J.J., Gorczyca, P. and Kaplan, J.C. (1991) "Maximizing sensitivity and specificity of PCR by preamplification heating", Nucleic Acids Research 19, 3749.
5. Emanuelsson, O., Nielsen, H. and Von Heijne, G. (1999) "ChloroP, a neural network-based method for predicting chloroplast transit peptides and their cleavage sites", Protein Science 8, 978-984.
6. Emanuelsson, O., Nielsen, H., Brunak, S. and Von Heijne, G. (2000) "Predicting subcellular localization of proteins based on their N-terminal amino acid sequence", Journal of Molecular Biology 300, 1005-1016.
7. Halperin, T. and Adam, Z. (1996) "Degradation of mistargeted OEE33 in the chloroplast stroma", Plant Molecular Biology 30, 925-933.
8. Kiyosue, T., Yamaguchi-Shinozaki, K. and Shinozaki, K. (1993) "Characterization of cDNA for a dehydration-inducible gene that encodes a CLPA, B-like protein in Arabidopsis thaliana L.", Biochemical and Biophysical Research Communications 196, 1214-1220.
9. Liu, X.Q. and Jagendorf, A.T. (1984) "ATP-dependent proteolysis in pea chloroplasts", FEBS Letters 166, 248-252.
10. ΔΔCT method", Method 25, 402-408.
11. Lohman, K., Gan, S., John, M. and Amasino, R.M. (1994) "Molecular analysis of natural leaf senescence in Arabidopsis thaliana", Plant Physiology 92, 322-328.
12. Lupas, A., Van Dyke, M. and Stock, J. (1991) "Predicting coiled coils from protein sequences", Science 252, 1162-1164.
13. Majeran, W., Wollman, EA. and Vallon, O. (2000) "Evidence for a role of ClpP in the degradation of the chloroplast cytochrome b6f complex", Plant Cell 12, 137-150.
14. Moolenaar, G.F., Franken, K.L., Dijkstra, D.M., Thomas-Oates, J.E., Visse, R., Van De Putte, P. and Goosen, N. (1995) "The C-terminal region of the UvrB protein of Escherichia coli contains an important determinant for UvrC binding to the preincision complex but not the catalytic site for 3′-incision", Journal of Biology Chemistry 270, 30508-30515.
15. Nakashima, K., Kiyosue, T., Yamaguchi-Shinozaki, K. and Shinozaki, K. (1997) "A nuclear gene, erdl, encoding a chloroplast-targeted Clp protease regulatory subunit homolog is not only induced by water stress but also developmentally up-regulated during senescence in Arabidopsis thaliana", Plant Journal 12, 851-861.
16. Nakabayashi, K., Ito, M., Kiosue, T., Shinozaki, K. and Watanabe, A. (1999) "Identification of clp genes expressed in senescing Arabidopsis leaves", Plant Cell Physiology 40, 504-514.
17. Nielsen, H., Engelbrecht, J., Brunak, S. and Von Heijne, G. (1997) "Identification of prokaryotic and eukaryotic signal peptides and prediction of their cleavage sites", Protein Engineering 10, 1-6.
18. Nieto-Sotelo, J., Kannan, K.B., Martúnez, L.M. and Segal, C. (1999) "Characterization of a maize heat-shock protein 101 gene, HSP101, encoding a ClpB/Hsp100 protein homologue", Gene 230, 187-195.
19. Schirmer, E.C., Glover, J.R., Singer, M.A. and Lindquist, S. (1996) "HSP100/Clp proteins: a common mechanism explains diverse functions", Trends in Biochemical Science 21, 289-296.
20. Van Houten, B. and Snowden, A. (1993) "Mechanism of action of the Escherichia coli UvrABC nuclease: clues to the damage recognition problem", Bioessays 15, 51-59.
21. Weaver, L.M., Froehlich, J.E. and Amasino, R.M. (1999) "Chloroplast-targeted ERD1 protein declines but its mRNA increases during senescence in Arabidopsis L.", Plant Physiology 119, 1209-1216.