GABI-Kat SimpleSearch: A flanking sequence tag (FST) database for the identification of T-DNA insertion mutants in Arabidopsis thaliana

Bioinformatics

Volumn 19, Issue 11, 2003, Pages 1441-1442

  Li, Yong ^a   Rosso, Mario G ^a   Strizhov, Nicolai ^a,b   Viehoever, Prisca ^a   Weisshaar, Bernd ^a,c  

^a MAX PLANCK INSTITUTE FOR PLANT BREEDING RESEARCH   (Germany)

^b MAX PLANCK UNIT FOR STRUCTURAL MOLECULAR BIOLOGY   (Germany)

^c BIELEFELD UNIVERSITY   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

DNA;

ARABIDOPSIS; ARTICLE; COMPUTER INTERFACE; CONTROLLED STUDY; DNA SEQUENCE; GABI KAT SIMPLESEARCH; GENE INSERTION; GENE SEQUENCE; MEDICAL RESEARCH; MUTAGENESIS; MUTANT; NONHUMAN; PLANT GENETICS; PRIORITY JOURNAL; SEQUENCE ALIGNMENT; SEQUENCE DATABASE; SEQUENCE TAGGED SITE;

ARABIDOPSIS; ARABIDOPSIS THALIANA; INSERTION SEQUENCES;

EID: 0042594466     PISSN: 13674803     EISSN: 13674811     Source Type: Journal    
DOI: 10.1093/bioinformatics/btg170     Document Type: Article

References (8)

1. Altschul,S.F., Madden,T.L., Schaffer,A.A., Zhang,J., Zhang,Z., Miller,W. and Lipman,D.J. (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res., 25, 3389-3402.
2. Ewing,B., Hillier,L., Wendl,M.C. and Green,P. (1998) Base-calling of automated sequencer traces using phred. I. Accuracy assessment. Genome Res., 8, 175-185.
3. Krysan,P.J., Young,J.C. and Sussman,M.R. (1999) T-DNA as an insertional mutagen in Arabidopsis. Plant Cell, 11, 2283-2290.
4. Parinov,S., Sevugan,M., De,Y., Yang,W.C., Kumaran,M. and Sundaresan,V. (1999) Analysis of flanking sequences from dissociation insertion lines: a database for reverse genetics in Arabidopsis. Plant Cell, 11, 2263-2270.
5. Samson,F., Brunaud,V., Balzergue,S., Dubreucq,B., Lepiniec,L., Pelletier,G., Caboche,M. and Lecharny,A. (2002) FLAGdb/FST: a database of mapped flanking insertion sites (FSTs) of Arabidopsis thaliana T-DNA transformants. Nucleic Acids Res., 30, 94-97.
6. Schoof,H., Zaccaria,P., Gundlach,H., Lemcke,K., Rudd,S., Kolesov,G., Arnold,R., Mewes,H.W. and Mayer,K.F. (2002) MIPS Arabidopsis thaliana Database (MAtDB): an integrated biological knowledge resource based on the first complete plant genome. Nucleic Acids Res., 30, 91-93.
7. The Arabidopmis Genome Initiative (2000) Analysis of the genome sequence of the flowering plant Arabidopsis thaliana. Nature, 408, 796-815.
8. Wisman,E., Hartman,U., Sagasser,M., Baumann,E., Palme,K., Hahlbrock,K., Saedler,H. and Weisshaar,B. (1998) Knock-out mutants from an En-1 mutagenized Arabidopsis thaliana population generate phenylpropanoid biosynthesis phenotypes. Proc. Natl Acad. Sci. USA, 95, 12432-12437.