COII: A useful tool for inferring phylogenetic relationships among New World monkeys (Primates, Platyrrhini)

Zoologica Scripta

Volumn 32, Issue 5, 2003, Pages 397-406

  Ascunce, Marina S ^a,b   Hasson, Esteban ^a   Mudry, Marta D ^a  

^a UNIVERSIDAD DE BUENOS AIRES   (Argentina)

^b UNIVERSITY OF FLORIDA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ALOUATTA; ATELES; BRACHYTELES; CEBIDAE; CEBUS; LAGOTHRIX; MAMMALIA; PLATYRRHINI; PRIMATES; SAIMIRI;

EID: 0042358886     PISSN: 03003256     EISSN: None     Source Type: Journal    
DOI: 10.1046/j.1463-6409.2003.00123.x     Document Type: Article

References (55)

1. Adkins, R. M. & Honeycutt, R. L. (1994). Evolution of the primate cytochrome c oxidase subunit II gene. Journal of Molecular Evolution, 38, 215-231.
2. Ascunce, M. S., Hasson, E. & Mudry, M. D. (2002). Description of the cytochrome c oxidase subunit II gene in some genera of New World Monkeys (Primates, Platyrrhini). Genetica, 114, 253-267.
3. Ashley, M. V. & Vaughn, J. L. (1995). Owl monkeys (Aotus) are highly divergent in mitochondrial cytochrome c oxidase (COII) sequences. International Journal of Primatology, 16, 793-806.
4. Boinski, S. & Cropp, S. (1999). Disparate data sets resolve squirrel monkey (Saimiri) taxonomy: Implications for behavioral, ecology and biochemical usage. International Journal of Primatology, 20, 237-256.
5. Cao, Y., Adachi, J., Janke, A., Pääbo, S. & Hasegawa, M. (1994). Phylogenetic relationships among eutherian orders estimated from inferred sequences of mitochondrial proteins: Instability of a tree based on a single gene. Journal of Molecular Evolution, 39, 519-527.
6. Collins, A. C. & Dubach, J. M. (2000). Biogeographic and ecological forces responsible for speciation in Ateles. International Journal of Primatology, 21, 421-444.
7. Cummings, M. P., Otto, P. & Wakeley, J. (1995). Sampling properties of DNA sequence data in phylogenetic analysis. Molecular Biology and Evolution, 12, 814-822.
8. Disotell, T. R., Honeycutt, R. L. & Ruvolo, M. (1992). Mitochondrial DNA phylogeny of the Old-World monkey tribe Papionini. Molecular Biology and Evolution, 9, 1-13.
9. von Dornum, M. & Ruvolo, M. (1999). Phylogenetic relationships of the New World monkeys (Primates, Platyrrhini) based on nuclear G6PD DNA sequences. Molecular Phylogenetics and Evolution, 11, 459-476.
10. Eisengberg, J. F. (1979). Habitat economy and society: some correlations and hypotheses for the Neotropical Primates. In I. S. Bernstein & E. O. Smith (Eds) Primate Ecology and Human Origins (pp. 215-262). New York: Garland STPM.
11. Engel, S. R., Hogan, K. M., Taylor, J. F. & Davis, S. D. (1998). Molecular systematics and paleobiogeography of the South American sigmodontine rodents. Molecular Biology and Evolution, 15, 35-49.
12. Felsenstein, J. (1978). Cases in which parsimony or compatibility methods will be positively misleading. Systematic Zoology, 27, 401-410.
13. Felsenstein, J. (1985). Confidence limits on phylogeny: An approach using the bootstrap. Evolution, 39, 783-791.
14. Figueiredo, W. B., Carvalho-Filho, N. M., Schneider, H. & Sampaio, I. (1998). Mitochondrial DNA sequences and the taxonomic status of Alouatta seniculus populations in northeastern Amazonia. Neotropical Primates, 6, 73-77.
15. Fleagle, J. G. (1998). Primate Adaptation and Evolution. San Diego, CA: Academic Press.
16. Ford, S. (1986). Systematics of the New World monkeys. In D. R. Swindler & J. Erwin (Eds) Comparative Primate Biology, Vol. 1: Systematics, Evolution and Anatomy (pp. 73-135). New York: Alan R. Liss.
17. Graur, D. & Li, W. H. (2000). Genes, genetic codes, and mutation. In A. D. Sinauer (Ed.) Fundamentals of Molecular Evolution (pp. 5-38). Sunderland, MA: Sinauer Associates Inc.
18. Graybeal, A. (1993). The phylogenetic utility of cytochrome b: lessons from bufoid frogs. Molecular Phylogenetics and Evolution, 2, 256-269.
19. Harada, M. L., Schneider, H., Schneider, M. P. C., Sampaio, I., Czelusniak, J. & Goodman, M. (1995). DNA evidence on the phylogenetic systematics of New World monkeys: Support for the sister-grouping of Cebus and Saimiri from two unlinked nuclear genes. Molecular Phylogenetics and Evolution, 4, 331-349.
20. Hershkovitz, P. (1949). Mammals of Northern Colombia. Preliminary report, 4 (Primates) with taxonomic revisions of some forms. Proceedings of the United States Natural Museum, 98, 323-427.
21. Hershkovitz, P. (1984). Taxonomy of squirrel monkeys genus Saimiri (Cebidae: Platyrrhini): a preliminary report with description of a hitherto unnamed form. American Journal of Primatology, 7, 155-210.
22. Hill, W. C. O. (1960). Primates: Comparative Anatomy and Taxonomy, Vol. 4. Cebidae, Part A. Edinburgh: Edinburgh University Press.
23. Hill, W. C. O. (1962). Primates: Comparative Anatomy and Taxonomy, Vol. 5. Cebidae, Part B. Edinburgh: Edinburgh University Press.
24. Hillis, D. M. & Dixon, M. T. (1989). Vertebrate phylogeny: evidence from 28S ribosomal DNA sequences. In B. Fernholm, K. Bremer & H. Jörnvall (Eds) The Hierarchy of Life: Molecules and Morphology in Phylogenetic Analysis (pp. 355-367). Amsterdam: Elsevier.
25. Hillis, D. M. & Huelsenbeck, J. P. (1992). Signal, noise, and reliability in molecular phylogenetic analyses. Journal of Heredity, 83, 189-195.
26. Horovitz, I., Zardoya, R. & Meyer, A. (1998). Platyrrhine systematics: a simultaneous analysis of molecular and morphological data. American Journal of Physical Anthropology, 106, 261-281.
27. Kay, R. F. (1990). The phyletic relationships of extant and fossil Pitheciinae (Platyrrhini, Anthropoidea). Journal of Human Evolution, 19, 175-208.
28. Kimura, M. (1980). A simple method for estimating evolutionary rate of base substitutions through comparative studies of nucleotide sequences. Journal of Molecular Evolution, 16, 111-120.
29. th International Symposium Association of Tropical Biology. New York: Columbia University Press.
30. Kumar, S., Tamura, K., Jakobsen, I. B. & Nei, M. (2001). MEGA 2 - Molecular Evolutionary Genetics Analysis, Version 2. [Computer software]. Bioinformatics, 17, 1244-1245.
31. Lockhart, P. J., Steel, M. A., Hendy, M. D. & Penny, D. (1994). Recovering evolutionary trees under a more realistic model of sequences evolution. Molecular Biology and Evolution, 11, 605-612.
32. Meireles, C. M., Czelusniak, J., Schneider, M. P. C., Muniz, J. A. P. C., Brigido, M. C., Ferreira, H. S. & Goodman, M. (1999a). Molecular phylogeny of ateline New World monkeys (Platyrrhini, Atelinae) based on γ-globin gene sequences: Evidence that Brachyteles is the sister group of Lagothrix. Molecular Phylogenetics and Evolution, 12, 10-30.
33. 1-globin pseudogene sequences. Genetics and Molecular Biology, 22, 337-344.
34. Meyer, A. (1994). Shortcomings of the cytochrome b gene as a molecular marker. Trends in Ecology and Evolution, 9, 278-280.
35. Miyamoto, M. M. & Boyle, S. M. (1989). The potential importance of mitochondrial DNA sequence data to eutherian mammal phylogeny. In B. Fernholm, K. Bremer & H. Jörnvall (Eds) The Hierarchy of Life: Molecules and Morphology in Phylogenetic Analysis (pp. 437-450). Elsevier: Amsterdan.
36. Mudry, M. D. (1990). Cytogenetic variability within and across populations of Cebus apella in Argentina. Folia Primatologica, 54, 206-216.
37. Napier, J. S. & Napier, P. H. (1967). A Handbook of Living Primates. London: Academic Press.
38. Patton, J. L. & Smith, M. F. (1992). mtDNA phylogeny of Andean mice: a test of diversification across ecological gradients. Evolution, 46, 174-183.
39. Peres, C. A. J. L. & Patton & da Silva, M. N. F. (1996). Riverine barriers and gene flow in Amazonian saddle-back tamarins. Folia Primatologica, 67, 113-124.
40. Ponsà, M., García, M., Borell, A., García, F., Egozcue, J., Gorostiaga, M. A., Delprat, A. & Mudry, M. (1995). Heterochromatin and cytogenetic polymorphisms in Cebus apella (Cebidae, Platyrrhini). American Journal of Primatology, 37, 325-331.
41. Rosenberger, A. L. (1981). Systematics: the Higher Taxa. In A. F. Coimbra-Filho & R. A. Mittermeier (Eds) Ecology and Behavior of the Neotropical Primates, Vol. 1 (pp. 9-27). Rio de Janeiro: Brazilian Academy of Science.
42. Ruvolo, M., Disotell, T. R., Allard, M. W., Brown, W. M. & Honeycutt, R. L. (1991). Resolution of the African hominoid trichotomy by use of a mitochondrial gene sequence. Proceedings of the National Academic of Sciences, USA, 88, 1570-1574.
43. Ruvolo, M., Zehr, S., von Dormun, M., Pan, D. B. & Chang & Lin, J. (1993). Mitochondrial COII sequences and modern human origins. Molecular Biology and Evolution, 10, 1115-1135.
44. Rylands, A. B., Schneider, H., Langguth, A., Mittermeier, R. A., Groves, C. P. & Rodríguez-Luna, E. (2000). An assessment of the diversity of New World Primates. Neotropical Primates, 8 (2), 61-93.
45. Rzhetsky, A. & Nei, M. (1992). A simple method for estimating and testing minimum evolution trees. Molecular Biology and Evolution, 9, 945-967.
46. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Molecular Biology and Evolution, 4, 406-425.
47. Schneider, H. (2000). The current stares of the New World Monkey Phylogeny. Annals of Academia Brasileira de Ciencias, 72, 165-172.
48. Schneider, H., Sampaio, I., Harada, M. L., Barroso, C. M. L., Schneider, M. P. C., Czelusniak, J. & Goodman, M. (1996). Molecular phylogeny of the New World Monkeys (Platyrrhini, Primates) based on two unlinked nuclear genes: IRBP intron1 and ε-globin sequences. American Journal of Physical Anthropology, 100, 153-179.
49. Schneider, H., Schneider, M. P. C., Sampaio, I., Harada, M. L., Stanhope, M., Czelusniak, J. & Goodman, M. (1993). Molecular phylogeny of the New World Monkeys (Platyrrhini, Primates). Molecular Phylogenetics and Evolution, 2, 225-242.
50. Simon, C., Frati, F., Beckenbach, A. T., Crespi, B., Liu, H. & Flook, P. (1994). Evolution, weighting, and phylogenetic utility of mitochondrial gene sequences and a compilation of conserved polymerase chain reaction primers. Annals of the Entomological Society of America, 87, 651-701.
51. Swofford, D. L. (1998). PAUP* - Phylogenetic Analysis Using Parsimony (*and Other Methods), Version 4. B8. [Computer software and manual]. Sunderland, MA: Sinauer Associates Inc.
52. Tagliaro, C. H., Schneider, M. P. C., Schneider, H., Sampaio, I. C. & Stanhope, M. J. (1997). Marmoset phylogenetics, conservation perspectives, and evolution of mtDNA control region. Molecular Biology and Evolution, 14, 674-684.
53. Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F. & Higgins, D. G. (1997). The ClustalX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Research, 24, 4876-4882.
54. Walsh, P. S., Metzger, D. A. & Higuchi, R. (1991). Chelex® 100 as a medium for simple extraction of DNA for PCR-based typing from forensic material. Bio Technique, 10, 506-513.
55. Zardoya, R. & Meyer, A. (1996). Phylogenetic performance of the mitochondrial protein-coding genes in resolving relationships among vertebrates. Molecular Biology and Evolution, 13, 933-942.