Deletion of DnaK's lid strengthens binding to the nucleotide exchange factor, GrpE: A kinetic and thermodynamic analysis

Biochemistry

Volumn 42, Issue 30, 2003, Pages 9028-9040

  Chesnokova, Liudmila S ^a   Slepenkov, Sergey V ^a   Protasevich, Irina I ^b   Sehorn, Michael G ^a   Brouillette, Christie G ^b   Witt, Stephan N ^a  

^a LOUISIANA STATE UNIVERSITY HEALTH SCIENCES CENTER   (United States)

^b UNIVERSITY OF ALABAMA AT BIRMINGHAM   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CALORIMETRY; DISSOCIATION; PROTEINS; RATE CONSTANTS; SURFACE PLASMON RESONANCE; TITRATION;

ISOTHERMAL MICROTITRATION CALORIMETRY (ITC);

BIOCHEMISTRY;

ADENOSINE TRIPHOSPHATASE; BINDING PROTEIN; CHAPERONE; DNA; HEAT SHOCK PROTEIN 70; PROTEIN GRPE; UNCLASSIFIED DRUG;

AMINO TERMINAL SEQUENCE; ARTICLE; BINDING AFFINITY; CALORIMETRY; CHEMICAL INTERACTION; COMPLEX FORMATION; CONTROLLED STUDY; DISSOCIATION; DNA BINDING; EQUILIBRIUM CONSTANT; GENE DELETION; KINETICS; MICROTITER PLATE ASSAY; NONHUMAN; PRIORITY JOURNAL; PROTEIN BINDING; PROTEIN DOMAIN; PROTEIN INTERACTION; SURFACE PLASMON RESONANCE; THERMODYNAMICS;

ADENOSINE DIPHOSPHATE; ADENOSINE TRIPHOSPHATASES; BACTERIAL PROTEINS; CATALYSIS; COLORIMETRY; ESCHERICHIA COLI PROTEINS; HEAT-SHOCK PROTEINS; HSP70 HEAT-SHOCK PROTEINS; KINETICS; MACROMOLECULAR SUBSTANCES; MUTAGENESIS, SITE-DIRECTED; PEPTIDE FRAGMENTS; PROTEIN BINDING; PROTEIN STRUCTURE, TERTIARY; SEQUENCE DELETION; SUBSTRATE SPECIFICITY; SURFACE PLASMON RESONANCE; THERMODYNAMICS;

EID: 0042165849     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi0346493     Document Type: Article

References (49)

1. Bukau, B., and Horwich, A. L. (1998) Cell 92, 351-366.
2. Ellis, R. J., and Hartl, F. U. (1999) Curr. Opin. Struct. Biol. 9, 102-110.
3. Hartl, F. U., and Hayer-Hartl, M. (2002) Science 295, 1852-1858.
4. Slepenkov, S. V., and Witt, S. N. (2002) Mol. Microbiol. 45, 1197-1206.
5. Packschies, L., Theyssen, H., Bucherberger, A., Bukau, B., Goody, R. S., and Reinstein, J. (1997) Biochemistry 36, 3417-3422.
6. Laloraya, S., Gambill, B. D., and Craig, E. A. (1994) Proc. Natl. Acad. Sci. U.S.A. 91, 6481-6485.
7. Naylor, D. J., Hoogenraad, N. J., and Hoj, P. B. (1996) FEBS Lett. 396, 181-188.
8. Stines, A. P., Naylor, D. J., Hoj, P. B., and van Heeswijck, R. (1999) Plant Physiol. 120, 923.
9. Naylor, D. J., Stines, A. P., Hoogenraad, N. J., and Hoj, P. B. (1998) J. Biol. Chem. 273, 21169-21177.
10. Padidam, M., Reddy, V. S., Beachy, R. N., and Fauquet, C. M. (1999) Plant Mol. Biol. 39, 871-881.
11. Kabani, M., Beckerich, J. M., and Brodsky, J. L. (2002) Mol. Cell. Biol. 22, 4677-4689.
12. Schönfeld, H.-J., Schmidt, D., Schröder, H., and Bukau, B. (1995) J. Biol. Chem. 270, 2183-2189.
13. Wu, B., Wawrzynow, Zylicz, M., and Georgopoulos, C. (1996) EMBO J. 15, 4806-4816.
14. Harrison, C. J., Hayer-Hartl, M., Di Liberto, M., Hartl, F.-U., and Kuriyan, J. (1997) Science 276, 431-435.
15. Jordan, R., and McMacken, R. (1995) J. Biol. Chem. 270, 4563-4569.
16. Mally, A., and Witt, S. N. (2001) Nat. Struct. Biol. 8, 254-257.
17. Mehl, A. F., Heskett, L. D., and Neal, K. M. (2001) Biochem. Biophys. Res. Commun. 282, 562-569.
18. Grimshaw, J. P., Jelesarov, I., Schonfeld, H. J., and Christen, P. (2001) J. Biol. Chem. 276, 6098-6104.
19. Groemping, Y., and Reinstein, J. (2001) J. Mol. Biol. 314, 167-178.
20. Groemping, Y., Klostermeier, D., Herrmann, C., Veit, T., Seidel, R., and Reinstein, J. (2001) J. Mol. Biol. 305, 1173-1183.
21. Gelinas, A. D., Langsetmo, K., Toth, J., Bethoney, K. A., Stafford, W. F., and Harrison, C. J. (2002) J. Mol. Biol. 323, 131-142.
22. Farr, C. D., Galiano, F. J., and Witt, S. N. (1995) Biochemistry 34, 15574-15582.
23. Slepenkov, S. V., and Witt, S. N. (1998) Biochemistry 37, 1015-1024.
24. Gao, B., Greene, L., and Eisenberg, E. (1994) Biochemistry 33, 2048-2054.
25. Bukau, B., and Walker, G. C. (1989) J. Bacteriol. 171, 6030-6038.
26. Pellecchia, M., Montgomery, D. L., Stevens, S. Y., Vander Kooi, C. W., Feng, H.-P., Gierasch, L. M., and Zuiderweg, E. R. P. (2000) Nat. Struct. Biol. 7, 298-303.
27. Wang, H., Kurochkin, A. V., Pang, Y., Hu, W., Flynn, G. C., and Zuiderweg, E. R. P. (1998) Biochemistry 37, 7929-7940.
28. Wiseman, T., Williston, S., Brandts, J. F., and Lin, L. N. (1989) Anal. Biochem. 179, 131-137.
29. Bevington, P. R. (1969) Data Reduction and Error Analysis for the Physical Sciences, McGraw-Hill, New York.
30. Montgomery, D., Jordan, R., McMacken, R., and Freire, E. (1993) J. Mol. Biol. 232, 680-692.
31. Flaherty, K. M., DeLuca-Flaherty, C., and McKay, D. B. (1990) Nature 346, 623-628.
32. Slepenkov, S. V., and Witt, S. N. (2002) Biochemistry 41, 12224-12235.
33. Mayer, M. P., Laufen, T., Paal, K., McCarty, J. S., and Bukau, B. (1999) J. Mol. Biol. 289, 1131-1144.
34. Buchberger, A., Schroder, H., Buttner, M., Valencia, A., and Bukau, B. (1994) Nat. Struct. Biol. 1, 95-101.
35. Morton, T. A., and Myszka, D. G. (1998) Methods Enzymol. 295, 268-294.
36. Slepenkov, S. V., Patchen, B., Peterson, K. M., and Witt, S. N. (2003) Biochemistry 42, 5867-5876.
37. Reid, K. L., and Fink, A. L. (1996) Cell Stress Chaperones 1, 127-137.
38. Zylicz, M., Ang, D., and Georgopoulos, C. (1987) J. Biol. Chem. 262, 17437-17442.
39. Palleros, D. R., Reid, K. L., Shi, L., Welch, W. J., and Fink, A. L. (1993) Nature 365, 664-666.
40. Schmid, D., Baici, A., Gehring, H., and Christen, P. (1994) Science 263, 971-973.
41. Gragerov, A., Zeng, L., Zhao, X., Burkholder, W., and Gottesman, M. E. (1994) J. Mol. Biol. 235, 848-854.
42. Farr, C. D., and Witt, S. N. (1997) Biochemistry 36, 10793-10800.
43. Koller, M. F., Baici, A., Huber, M., and Christen, P. (2002) FEBS Lett. 520, 25-29.
44. Pedrazzini, T., Sette, A., Albertson, M., and Grey, H. M. (1991) J. Immunol. 146, 3496-3501.
45. DeKroon, A. I. P. M., and McConnell, H. M. (1993) Proc. Natl. Acad. Sci. U.S.A. 90, 8797-8801.
46. Stuart, J. K., Myszka, D. G., Joss, L., Mitchell, R. S., McDonald, S. M., Xie, Z., Takayama, S., Reed, J. C., and Ely, K. R. (1998) J. Biol. Chem. 273, 22506-22514.
47. Sondermann, H., Scheufler, C., Schneider, C., Hohfeld, J., Hartl, F. U., and Moarefi, I. (2001) Science 291, 1553-1557.
48. Zhu, X., Zhao, X., Burkholder, W. F., Gragerov, A., Ogata, C. M., Gottesman, M. E., and Hendrickson, W. A. (1996) Science 272, 1606-1614.
49. Laemmli, U. K. (1970) Nature 227, 680-685.