Characterization of two porcine endogenous retrovirus integration loci and variability in pigs

Immunogenetics

Volumn 55, Issue 4, 2003, Pages 262-270

  Gorbovitskaia, Marie ^a   Liu, Zhaoliang ^b   Bourgeaux, Noelle ^a   Li, Ning ^b   Lian, Zhengxing ^b   Chardon, Patrick ^a   Rogel Gaillard, Claire ^a  

^a DIF   (France)

^b CHINA AGRICULTURAL UNIVERSITY   (China)

Author keywords

Genetic variability; Pig; Porcine endogenous retrovirus; Proviral integration; Xenotransplantation

Indexed keywords

ANIMAL TISSUE; ARTICLE; BACTERIAL ARTIFICIAL CHROMOSOME; BIODIVERSITY; BREEDING; CHROMOSOME 1Q; CHROMOSOME 7P; CONTROLLED STUDY; DNA FLANKING REGION; EXPRESSED SEQUENCE TAG; GENE; GENE LOCUS; GENETIC SELECTION; GENETIC VARIABILITY; NONHUMAN; NUCLEOTIDE SEQUENCE; PERV A GENE; PERV B GENE; POLYMERASE CHAIN REACTION; PORCINE ENDOGENOUS RETROVIRUS; PRIORITY JOURNAL; RETROVIRUS; SEQUENCE ANALYSIS; STRAIN DIFFERENCE; SWINE; VIRUS DNA CELL DNA INTERACTION; VIRUS INTEGRATION LOCUS; XENOTRANSPLANTATION;

ANIMALS; BASE SEQUENCE; CLONING, MOLECULAR; DNA, VIRAL; ENDOGENOUS RETROVIRUSES; EXPRESSED SEQUENCE TAGS; HUMANS; MOLECULAR SEQUENCE DATA; SEQUENCE HOMOLOGY, NUCLEIC ACID; SUS SCROFA; TERMINAL REPEAT SEQUENCES; TISSUE DONORS; TRANSPLANTATION, HETEROLOGOUS; VARIATION (GENETICS); VIRUS INTEGRATION;

ANIMALIA; BACTERIA (MICROORGANISMS); PIERIS BRASSICAE; PORCINE ENDOGENOUS RETROVIRUS; SUIDAE; SUS; SUS SCROFA; UNIDENTIFIED RETROVIRUS;

EID: 0042158683     PISSN: 00937711     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00251-003-0579-4     Document Type: Article

References (36)

1. Akiyoshi DE, Denaro M, Zhu H, Greenstein JL, Banerjee P, Fishman JA (1998) Identification of a full-length cDNA for an endogenous retrovirus of miniature swine. J Virol 72:4503-4507
2. Blusch JH, Seelmeir S, vonder Helm K (2002) Molecular and enzymatic characterization of the porcine endogenous retrovirus protease. J Virol 76:7913-7917
3. Clémenceau B, Jegou D, Martignat L, Sai P (2002) PERV infection of mouse and human cells by SFP pig islets in nude mice. Diabetologia 45:914-923
4. Coffin JM (1996) Retroviridae; the viruses and their replication. In: Fields BN, Knipe DM, Howley PM (eds) Fields Virology, 3rd edn. Lippincott-Raven, Philadelphia, Md, pp 1767-1847
5. Czauderna F, Fisher N, Boller K, Kurth R, Tönjes RR (2000) Establishment and characterization of molecular clones of porcine endogenous retroviruses replicating on human cells. J Virol 74:4028-4038
6. Deng YM, Tuch BE, Rawlinson WD (2000a) Transmission of porcine endogenous retroviruses in severe combined immunodeficient mice xenotransplanted with fetal porcine pancreatic cells. Transplantation 70:1010-1016
7. Deng, YM, Lee JH, Moran C, Jin JH, Tuch BE, Rawlinson WD (2000b) Mapping dispersed repetitive loci using semi-specific PCR cloning and somatic cell hybrid mapping. Nucleic Acids Res 28:E103
8. Heneine W, Tibell A, Switzer WM, Sandstrom P, Vazquez Rosales G, Mathews A, Korsgren O, Chapman LE, Folks TM, Groth CG (1998) No evidence of infection with porcine endogenous retrovirus in recipients of porcine islet-cell xenografts. Lancet 352:695-699
9. Herring C, Quinn G, Bower R, Parsons N, Logan NA, Brawley A, Elsome K, Whittam A, Fernandez-Suarez XM, Cunningham D, Onions D, Langford G, Scorbie L (2001) Mapping full-length porcine endogenous retroviruses in a Large White pig. J Virol 75:12252-12265
10. Hughes SH, Mutschler A, Bishop JM, Varmus HE (1981) A Rous sarcoma virus provirus is flanked by short direct repeats of a cellular DNA sequence present in only one copy prior to integration. Proc Natl Acad Sci U S A 78:4299-4303
11. Krach U, Fischer N, Czauderna F, Tönjes RR (2001) Comparison of replication-competent molecular clones of porcine endogenous retrovirus class A and class B derived from pig and human cells. J Virol 75:5465-5472
12. Lai L, Kolber-Simonds D, Park KW, Cheong HT, Greenstein JL, Im GS, Samuel M, Bonk A, Rieke A, Day BN, Murphy CN, Carter DB, Hawley RJ, Prather RS (2002) Production of alpha-1,3-galactosyltransferase knockout pigs by nuclear transfer cloning. Science 295:1089-1092
13. Le Tissier P, Stoye JP, Takeuchi Y, Patience C, Weiss RA (1997) Two sets of human-tropic pig retrovirus. Nature 389:681-682
14. Lee JH, Webb GC, Allen RDM, Moran C (2002) Characterizing and mapping porcine endogenous retroviruses in Westran pigs. J Virol 76:5548-5556
15. Martin U, Steinhoff G, Kiessig V, Chikobava M, Anssar M, Morschheuser T, Lapin B, Haverich A (1998) Porcine endogenous retrovirus (PERV) was not transmitted from transplanted porcine endothelial cells to baboons in vivo. Transplant Int 11:247-251
16. Martin U, Steinhoff G, Kiessig V, Chikobava M, Anssar M, Morschheuser T, Lapin B, Haverich A (1999) Porcine endogenous retrovirus is transmitted neither in vivo nor in vitro from porcine endothelial cells to baboons. Transplant Proc 31:913-914
17. Niebert M, Rogel-Gaillard C, Chardon P, Tönjes RR (2002) Characterization of chromosomally assigned replication-competent gamma porcine endogenous retroviruses derived from a Large White pig and expression in human cells. J Virol 76:2714-2720
18. Nikbakht KN, Boone LR, Glover PL, Myer FE, Yang WK (1987) Characterization of a molecular clone of RFM/Un mouse chromosomal DNA that contains a full-length endogenous murine leukaemia virus-related proviral genome. J Gen Virol 68:683-693
19. Oldmixon BA, Wood JC, Ericsson TA, Wilson CA, White-Scharf ME, Andersson G, Greenstein JL, Schuurman HJ, Patience C (2002) Porcine endogenous retrovirus transmission characteristics of an inbred herd of miniature swine. J Virol 76:3045-3048
20. Paradis K, Langford G, Long Z, Heneine W, Sandstrom P, Switzer WM, Chapman LE, Lockey C, Onions D, the XEN 111 Study Group, Otto E (1999) Search for cross-species transmission of porcine endogenous retrovirus in patients treated with living pig tissue. Science 285:1236-1241
21. Patience C, Takeuchi Y, Weiss RA (1997) Infection of human cells by an endogenous retrovirus of pigs. Nat Med 3:282-286
22. Patience C, Patton GS, Takeuchi Y, Weiss RA, McClure MO, Rydberg L, Breimer ME (1998) No evidence of pig DNA or retroviral infection in patients with short-term extracorporeal connection to pig kidneys. Lancet 352:699-701
23. Patience C, Switzer WM, Takeuchi Y, Griffiths DJ, Goward ME, Heneine W, Stoye JP, Weiss RA (2001) Multiple groups of novel retroviral genomes in pigs and related species. J Virol 75:2771-2775
24. Qari SH, Magre S, Garcia-Lerma JG, Hussain AI, Takeuchi Y, Patience C, Weiss RA, Heneine W (2001) Susceptibility of the porcine endogenous retrovirus to reverse transcriptase and protease inhibitors. J Virol 75:1048-1053
25. Rogel-Gaillard C, Bourgeaux N, Billault A, Vaiman M, Chardon P (1999) Construction of a swine BAC library: application to the characterization and mapping of porcine type C endoviral elements. Cytogenet Cell Genet 85:205-211
26. Rogel-Gaillard C, Hayes H, Bourgeaux N, Chardon P (2001) Assignment of two new loci for gamma 1 porcine endogenous retroviruses (γ1 PERV) to pig chromosome bands 2q21 and 11q12 by in situ hybridization. Cytogenet Cell Genet 95:112-113
27. Sambrook J, Fritsch EF, Maniatis T (1989) Molecular cloning: a laboratory manual, 2nd edn. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
28. Scherdin U, Rhodes K, Breindl M (1990) Transcriptionally active genome regions are preferred targets for retroviral integration. J Virol 64:907-912
29. Shih CC, Stoye JP, Coffin JM (1988) Highly preferred targets for retrovirus integration. Cell 53:531-537
30. Takeuchi Y, Patience C, Magre S, Weiss RA, Banerjee PT, Le Tissier P, Stoye JP (1998) Host range and interference studies of three classes of pig endogenous retrovirus. J Virol 72:9986-9991
31. Thompson JD, Higgins DG, Gibson TJ (1994) CLUSTALW: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22:4673-4680
32. Tristem M, Kabat P, Lieberman L, Linde S, Karpas A, Hill F (1996) Characterization of a novel murine leukemia virus-related subgroup within mammals. J Virol 70:8241-8246
33. van der Laan LJW, Lockey C, Griffeth BC, Frasier FS, Wilson CA, Onions DE, Hering BJ, Long Z, Otto E, Torbett BE, Salomon DR (2000) Infection by porcine endogenous retrovirus after islet xenotransplantation in SCID mice. Nature 407:90-94
34. Wilson CA, Wong S, Muller J, Davidson CE, Rose TM, Burd P (1998) Type C retrovirus released from porcine primary peripheral blood mononuclear cells infects human cells. J Virol 72:3082-3087
35. Wilson CA, Wong S, VanBrocklin M, Federspiel MJ (2000) Extended analysis of the in vitro tropism of porcine endogenous retrovirus. J Virol 74:49-56
36. Weiss RA (1998) Transgenic pigs and virus adaptation. Nature 391:327-328