Reexamination of the structural characteristics of the acyl carrier protein

Biospectroscopy

Volumn 3, Issue 3, 1997, Pages 171-181

  Bienkiewicz, Ewa A ^a   Woody, Robert W ^a  

^a Department of Environmental and Radiological Health Sciences   (United States)

Author keywords

Circular dichroism spectroscopy; Dimer to monomer conversion; Protein secondary structure analysis

Indexed keywords

EID: 0041988755     PISSN: 10754261     EISSN: None     Source Type: Journal    
DOI: 10.1002/(sici)1520-6343(1997)3:3<171::aid-bspy1>3.0.co;2-9     Document Type: Article

References (55)

1. P. W. Majerus, "Acyl carrier protein. Structural requirements for function in fatty acid biosynthesis," J. Biol. Chem., 242, 2325-2332 (1967).
2. P. R. Vagelos, A. W. Alberts, and P. W. Majerus, "Mechanism of saturated fatty acid biosynthesis in Escherichia coli," Methods Enzymol., XIV, 39-51 (1969).
3. W. S. Hancock, D. J. Prescott, G. R. Marshall, and P. R. Vagelos, "Acyl carrier protein. XVIII. Chemical synthesis and characterization of a protein with acyl carrier protein activity," J. Biol. Chem., 247, 6224-6233 (1972).
4. W. S. Hancock, G. R. Marshall, and P. R. Vagelos, "Acyl carrier protein. XX. Chemical synthesis and characterization of analogues of acyl carrier protein," J. Biol. Chem., 248, 2424-2434 (1973).
5. C. O. Rock, J. E. Cronan, Jr., and I. M. Armitage, "Molecular properties of acyl carrier derivatives," J. Biol. Chem., 256, 2669-2674 (1981).
6. P. W. Majerus, A. W. Alberts, and P. R. Vagelos, "Acyl carrier protein. VII. The primary structure of the substrate-binding site," J. Biol. Chem., 240, 4723-4726 (1965).
7. T. C. Vanaman, S. J. Wakil, and R. L. Hill, "The complete amino acid sequence of the acyl carrier protein of Escherichia coli," J. Biol. Chem., 243, 6420-6431 (1968).
8. C. O. Rock and S. Jackowski, "Regulation of phospholipid synthesis in Escherichia coli," J. Biol. Chem., 257, 10759-10765 (1982).
9. K. A. Brozek and C. R. H. Raetz, "Biosynthesis of lipid A in Escherichia coli," J. Biol. Chem., 265, 15410-15417 (1990).
10. H. Therisod and E. P. Kennedy, "The function of acyl carrier protein in the synthesis of membrane-derived oligosaccharides does not require its phosphopantetheine prosthetic group," Proc. Natl. Acad. Sci. U.S.A., 84, 8235-8238 (1987).
11. J-P. Issartel, V. Koronakis, and C. Hughes, "Activation of Escherichia coli prohaemolysin to the mature toxin by acyl carrier protein-dependent fatty acylation," Nature, 351, 759-761 (1991).
12. D. A. Hopwood and D. H. Sherman, "Molecular genetics of polyketides and its comparison to fatty acid biosynthesis," Annu. Rev. Genet., 24, 37-66 (1990).
13. S. Brody and S. Mikolajczyk, "Neurospora mitochondria contain an acyl carrier protein," Eur. J. Biochem., 173, 353-359 (1988).
14. M. J. Runswick, I. M. Fearnley, J. M. Skehel, and J. E. Walker, "Presence of an acyl carrier protein in NADH : ubiquinone oxidoreductase from bovine heart mitochondria," FEBS Lett., 286, 121-124 (1991).
15. R. Zensen, H. Husmann, R. Schneider, T. Peine, and H. Weiss, "De novo synthesis and desaturation of fatty acids at the mitochondrial acyl-carrier protein, a subunit of NADH : ubiquinone oxidoreductase in Neurospora crassa," FEBS Lett., 310, 179-181 (1992).
16. S. Jackowski and C. O. Rock, "Altered molecular form of acyl carrier protein associated with β-ketoacyl-acyl carrier protein synthase II (fabF) mutants," J. Bacteriol., 169, 1469-1473 (1987).
17. C. O. Rock and J. E. Cronan, Jr., "Re-evaluation of the solution structure of acyl carrier protein," J. Biol. Chem., 254, 9778-9785 (1979).
18. C. O. Rock and J. E. Cronan, Jr., "Improved purification of acyl carrier protein," Anal. Biochem., 102, 362-364 (1980).
19. K. H. Mayo, P. M. Tyrell, and J. H. Prestegard, "Acyl carrier protein from Escherichia coli. I. Aspects of the solution structure as evidenced by proton nuclear Overhauser experiments at 500 MHz," Biochemistry, 22, 4485-4493 (1983).
20. T. A. Holak and J. H. Prestegard, "Secondary structure of acyl carrier protein as derived from two-dimensional 1 H NMR spectroscopy," Biochemistry, 25, 5766-5774 (1986).
21. T. A. Holak, A. F. Frederick, and J. H. Prestegard, "Purification and NMR characterization of acyl carrier protein," J. Biol. Chem., 262, 3685-3689 (1987).
22. T. A. Holak, J. H. Prestegard, and J. D. Forman, "NMR-pseudoenergy approach to the solution structure of acyl carrier protein," Biochemistry, 26, 4652-4660 (1987).
23. T. A. Holak, S. K. Kearsley, Y. Kim, and J. H. Prestegard, "Three-dimensional structure of acyl carrier protein determined by NMR pseudoenergy and distance geometry calculations," Biochemistry, 27, 6135-6142 (1988).
24. T. A. Holak, M. Nilges, J. H. Prestegard, A. M. Gronenborn, and G. M. Clore, "Three-dimensional structure of acyl carrier protein in solution determined by nuclear magnetic resonance and the combined use of dynamical simulated annealing and distance geometry," Eur. J. Biochem., 175, 9-15 (1988).
25. T. A. Holak, M. Nilges, and H. Oschkinat, "Improved strategies for the determination of protein structures from NMR data: the solution structure of acyl carrier protein," FEBS Lett., 242, 218-224 (1989).
26. Y. Kim and J. H. Prestegard, "A dynamic model for the structure of acyl carrier protein in solution," Biochemistry, 28, 8792-8797 (1989).
27. Y. Kim and J. H. Prestegard, "Refinement of the NMR structures of acyl carrier protein with scalar coupling data," Proteins: Struct. Funct. Genet., 8, 377-385 (1990).
28. M. Andrec, R. B. Hill, and J. H. Prestegard, "Amide exchange rates in Escherichia coli acyl carrier protein: correlation with protein structure and dynamics," Protein Sci., 4, 983-993 (1995).
29. T. Takagi and C. Tanford, "Gross conformation of Escherichia coli acyl carrier protein," J. Biol. Chem., 243, 6432-6435 (1968).
30. H. Schulz, "On the structure-function relationship of acyl carrier protein of Escherichia coli," J. Biol. Chem., 250, 2299-2304 (1975).
31. H. Schulz, "Increased conformational stability of Escherichia coli acyl carrier protein in the presence of divalent cations," FEBS Lett., 78, 303-306 (1977).
32. M. L. Ernst-Fonberg, L. M. S. Worsham, and S. G. Williams, "Comparison of acyl-carrier protein and other protein structures in aqueous solutions by Fourier-transform infrared spectroscopy," Biochim. Biophys. Acta, 1164, 273-282 (1993).
33. Y.-H. Chen, J. T. Yang, and H. M. Martinez, "Determination of the secondary structures of proteins by circular dichroism and optical rotatory dispersion," Biochemistry, 11, 4120-4131 (1972).
34. D. J. Prescott, J. Elovson, and P. R. Vagelos, "Acyl carrier protein. XI. The specificity of acyl carrier protein synthetase," J. Biol. Chem., 244, 4517-4521 (1969).
35. J. P. Abita, M. Lazdunski, and G. Ailhaud, "Structure-function relationships of the acyl-carrier protein of Escherichia coli," Eur. J. Biochem., 23, 412-420 (1971).
36. 1H NMR spectroscopy," FEBS Lett., 293, 72-80 (1991).
37. F. A. Burr and B. Burr, "Slab gel system for the resolution of oligopeptides below molecular weight of 10,000," Methods Enzymol., 96, 239-244 (1983).
38. U. K. Laemmli, "Cleavage of structural proteins during the assembly of the head of bacteriophage T4," Nature, 227, 680-685 (1970).
39. W. W. Cleland, "Dithiothreitol, a new protective reagent for SH groups," Biochemistry, 3, 480-482 (1964).
40. 2-terminal sequence of peptides electroblotted onto PVDF membranes from tricine-sodium dodecyl sulfate-polyacrylamide gel electrophoresis: application to peptide mapping of human complement component C3," Anal. Biochem., 181, 33-39 (1989).
41. H. Schägger and G. von Jagow, "Tricine-sodium dodecyl sulfate-polyacrylamide gel electrophoresis for the separation of proteins in the range from 1 to 100 kDa," Anal. Biochem., 166, 368-379 (1987).
42. K. Weber and M. Osborn, "Proteins and sodium dodecyl sulfate: molecular weight determination on polyacrylamide gels and related procedures" in Proteins, Vol. I, ed. by H. Neurath and R. L. Hill, Acad. Press, New York, 1975, pp. 179-223.
43. C. O. Rock and J. E. Cronan, Jr., "Acyl carrier protein from Escherichia coli," Methods Enzymol., 71, 341-351 (1981).
44. Richard Slayden, Colorado State University, personal communication.
45. N. Sreerama and R. W. Woody, "A self-consistent method for the analysis of protein secondary structure from circular dichroism," Anal. Biochem., 209, 32-44 (1993).
46. N. Sreerama and R. W. Woody, "Poly(Pro)II helices in globular proteins: identification and circular dichroic analysis," Biochemistry, 33, 10022-10025 (1994).
47. W. C. Johnson, "Protein secondary structure and circular dichroism: a practical guide," Proteins: Struct. Funct. Genet., 7, 205-214 (1990).
48. R. W. Woody, "Circular dichroism of peptides and proteins" in Circular Dichroism. Principles and Applications, ed. by K. Nakanishi, N. Berova, and R. W. Woody, VCH Publishers, Inc., New York, 1994, pp. 473-496.
49. R. W. Woody, "Circular dichroism," Methods Enzymol., 246, 34-71 (1994).
50. R. B. Hill, K. R. MacKenzie, J. M. Flanagan, J. E. Cronan, Jr., and J. H. Prestegard, "Overexpression, purification, and characterization of Escherichia coli acyl carrier protein and two mutant proteins," Prot. Expr. Purific., 6, 394-400 (1995).
51. S. Moore, "On the determination of cystine as cysteic acid," J. Biol. Chem., 238, 235-237 (1963).
52. T. U. Gerngross, K. D. Snell, O. P. Peoples, A. J. Sinskey, E. Csuhai, S. Masamune, and J. Stubbe, "Overexpression and purification of the soluble polyhydroxyalkanoate synthase from Alcaligenes eutrophus: evidence for a required posttranslational modification for catalytic activity," Biochemistry, 33, 9311-9320 (1994).
53. H. Therisod, A. C. Weissborn, and E. P. Kennedy, "An essential function for acyl carrier protein in the biosynthesis of membrane-derived oligosaccharides of Escherichia coli," Proc. Natl. Acad. Sci. U.S.A., 83, 7236-7240 (1986).
54. R. K. DiNello and M. L. Ernst-Fonberg, "Purification and partial characterization of an acyl carrier protein from Euglena gracilis," J. Biol. Chem., 248, 1707-1711 (1973).
55. A. H. Etemadi and M. Josse, "Méthodes simples et rapides de détection et de l'essai de l'activité de l'ACP d'Escherichia coli utilisées au cours de sa purification," Biochimie, 54, 1349-1357 (1972).