Cloning and characterization of a gene encoding ubiquitin conjugating enzyme from the mangrove species, Avicennia marina (Forsk.) Vierh.

Indian Journal of Biotechnology

Volumn 1, Issue 2, 2002, Pages 164-169

  Parani, M ^a   Jithesh, M N ^a   Lakshmi, M ^a   Parida, A ^a  

^a M S SWAMINATHAN RESEARCH FOUNDATION   (India)

Author keywords

Avicennia marina; Mangroves; Proteolysis; Ubiquitin conjugating enzyme

Indexed keywords

COMPLEMENTARY DNA; GENOMIC DNA; RNA; RNA 18S; UBIQUITIN CONJUGATING ENZYME;

AMINO ACID SEQUENCE; ARABIDOPSIS; ARTICLE; AVICENNIA MARINA; CAENORHABDITIS ELEGANS; DNA REPAIR; DROSOPHILA MELANOGASTER; ENZYME ACTIVITY; EXPRESSED SEQUENCE TAG; GENE EXPRESSION; HUMAN; MANGROVE; MOLECULAR CLONING; NONHUMAN; NORTHERN BLOTTING; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; PLANT; POLYMERASE CHAIN REACTION; PROTEIN DEGRADATION; SACCHAROMYCES CEREVISIAE; SEQUENCE HOMOLOGY; SOUTHERN BLOTTING;

ARABIDOPSIS; ARABIDOPSIS THALIANA; AVICENNIA MARINA; CAENORHABDITIS; CAENORHABDITIS ELEGANS; DROSOPHILA MELANOGASTER; EMBRYOPHYTA; HOMO; HOMO SAPIENS; MELANOGASTER; RATTUS; RATTUS NORVEGICUS; RHIZOPHORACEAE; SACCHAROMYCES; SACCHAROMYCES CEREVISIAE;

EID: 0041815938     PISSN: 09725849     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (26)

1. Birnboim H C & Doly J, 1979. A rapid alkaline extraction procedure for screening recombinant plasmid DNA. Nucleic Acids Res, 7, 1513.
2. Chomzynski P & Sacchi N, 1987. Single-step method of RNA isolation by acid guanidium thiocyanate-phenol-chloroform extraction. Ann Biochem, 162, 156-159.
3. Ciechanover A, 1994. The ubiquitin-proteasome proteolytic pathway. Cell, 79, 13-21.
4. Covitz P et al, 1998. Expressed sequence tags from a root-hair enriched Medicago trunculata cDNA library. Plant Physiol, 117, 1325-1332.
5. Emilie H Y et al, 2000. Isolation of 3 salt-inducible low-abundance cDNAs from light grown callus of Mesembryanthemum crystallinum by suppression substractive hybridization. Physiol Plant, 110, 402-409.
6. Feussner K et al, 1997. Isolation of a cDNA coding for an ubiquitin-conjugating enzyme UBC1 of tomato-the first stress-induced UBC of higher plants. FEBS Lett, 409, 211-215.
7. Finley D & Chau V, 1991. Ubiquitination. Annu Rev Cell Biol, 7, 25-69.
8. Hershko A & Ciechanover A, 1992. The ubiquitin system for protein degradation. Annu Rev Biochem, 61, 761-807.
9. Hochstrasser M, 1996. Ubiquitin-dependent protein degradation. Annu Rev Genet, 30, 405-439.
10. Ingvardsen C & Veierskov B, 2001. Ubiquitin-and proteasome-dependent proteolysis in plants. Physiol Plant, 112, 451-459.
11. Knop M et al, 1993. Vacuolar/lysosomal proteolysis: proteases, substrates, mechanisms. Curr Opin Cell Biol, 5, 990-996.
12. Nishi R et al, 1993. Isolation and characterization of a rice cDNA which encodes a ubiquitin protein and a 52 amino acid extension protein. Plant Mol Biol, 22, 159-161.
13. Nocker S V et al, 1996. The Arabidopsis thaliana UBC7/13/14 genes encode a family of multiubiquitin chain-forming E2 enzymes. J Biol Chem, 271, 12150-12158.
14. Parani M et al, 1997. Molecular Phylogeny of mangroves III. Parentage analysis of a Rhizophora hybrid using Random Amplified Polymorphic DNA (RAPD) and Restriction Fragment Length Polymorphism (RFLP) markers. Aquat Bot, 58, 165-172.
15. Parani M et al, 1999. Molecular cloning and nucleotide sequence of 2-Enoyl-CoA Hydratase from the mangrove species, Avicennia marina (Accession No. AF190450) (PGR99-173). Plant Physiol, 121, 1057.
16. Prasad T et al, 2000. Evidence for an interaction between ubiquitin-conjugating enzymes and the 26s proteasome. Mol Cell Biol, 20, 4691-4698.
17. Rao A N, 1987. Mangrove ecosystems of Asia and the Pacific. in Mangroves of Asia and the Pacific: Status and Management: A technical report on the UNDP/UNESCO research and training, Pilot programme on mangrove management, edited by Umali. R.M. Ministry of Natural Resources, Philippines, Quezon City, Metro Manila. Pp 1-48.
18. Rounsley S D et al, 1996. The construction of Arabidopsis expressed sequence tag assemblies. Plant Physiol, 112, 1177-1183.
19. Sambrook J et al, 1989. Molecular Cloning: A Laboratory Manual. Cold Spring Harbor Laboratory, Cold Spring Harbor, New York.
20. Seufert W & Jentsch S, 1990.Ubiqitin conjugating enzymes UBC4 and UBC5 mediate selective degradation of short-lived and abnormal proteins. EMBO J, 9, 543-550.
21. Southern E M, 1975. Detection of specific sequences among DNA fragments separated by gel electrophoresis. J Mol Biol, 98, 503.
22. Sullivan M L & Vierstra R D 1991. Cloning of a 16-kDa ubiquitin carrier protein from wheat and Arabidopsis thaliana. J Biol Chem, 266, 23878-23885.
23. Sullivan M L et al, 1994. Homologues of wheat ubiquitin-conjugating enzymes-TaUBC1 and TaUBC4 are encoded by small multigene families in Arabidopsis thaliana. Plant Mol Biol, 24, 651-61.
24. Sung P et al, 1990. Mutation of cysteine-88 in the Saccharomyces cerevisiae RAD6 protein abolishes its ubiquitin-conjugating activity and its various biological functions. Proc Natl Acad Sci, 87, 2695-2699.
25. Thompson J D et al, 1994. ClustalW: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalities and weight matrix choice. Nucleic Acids Res, 22, 4673-4680.
26. Yen S K et al, 1999. Characterization of a gene encoding ubiquitin-conjugating enzyme from Mesembryanthemum crystallinium (Accession No. AF176040). (PGR99-147). Plant Physiol, 121, 685.