AP1 genes in Fugu indicate a divergent transcriptional control to that of mammals

Mammalian Genome

Volumn 14, Issue 8, 2003, Pages 514-525

  Cottage, Amanda J ^a   Edwards, Yvonne J K ^a   Elgar, Greg ^a  

^a MEDICAL RESEARCH COUNCIL   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

PROTEIN C FOS; PROTEIN C JUN; PROTEIN FOS; TRANSCRIPTION FACTOR AP 1; TRANSCRIPTION FACTOR FOSB; TRANSCRIPTION FACTOR FRA 1; TRANSCRIPTION FACTOR FRA 2; TRANSCRIPTION FACTOR JUNB; TRANSCRIPTION FACTOR JUND; UNCLASSIFIED DRUG;

ARTICLE; CELL DEATH; CELL PROLIFERATION; CONTROLLED STUDY; GENE CONTROL; GENE FUNCTION; GENE MUTATION; GENE SEQUENCE; GENETIC ANALYSIS; GENETIC TRANSCRIPTION; GENOME; NONHUMAN; NUCLEOTIDE SEQUENCE; PUFFER FISH; SEQUENCE ANALYSIS; TELEOST; VERTEBRATE;

AMINO ACID SEQUENCE; ANIMALS; DATABASES, GENETIC; GENE EXPRESSION REGULATION; GENES, FOS; GENES, JUN; HUMANS; MOLECULAR SEQUENCE DATA; PHYLOGENY; SEQUENCE ALIGNMENT; TAKIFUGU; TRANSCRIPTION FACTOR AP-1;

MAMMALIA; TAKIFUGU; TAKIFUGU RUBRIPES; TELEOST FISH; TELEOSTEI; TETRAODONTIDAE; VERTEBRATA;

EID: 0041814621     PISSN: 09388990     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00335-002-3067-5     Document Type: Article

References (53)

1. Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z et al. (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25, 3389-3402
2. Aparicio S, Chapman J, Stupka E, Putnam N, Chia JM et al. (2002) Whole-genome shotgun assembly and analysis of the genome of Fugu rubripes. Science 297, 1301-1310
3. Baichwal VR, Park A, Tjian R (1991) v-Src and EJ Ras alleviate repression of c-Jun by a cell-specific inhibitor. Nature 352, 165-168
4. Barila D, Mangano R, Gonfioni S, Kretzschmar J, Moro M (2000) A nuclear tyrosine phosphorylation circuit: c-Jun as an activator and substrate of c-Ab1 and JNK. EMBO J 19, 273-281
5. Baxendale S, Abdulla S, Elgar G, Buck D, Berks M et al. (1995) Comparative sequence analysis of the human and pufferfish Huntington's disease genes. Nat Genet 10, 67-76
6. Bergers G, Graninger P, Braselmann S, Wrighton C, Busslinger M (1995) Transcriptional activation of the fra-1 gene by AP-1 is mediated by regulatory sequences in the first intron. Mol Cell Biol 15, 3748-3758
7. Blenis J (1993) Signal transduction via the MAP kinases: proceed at your own RSK. Proc Natl Acad Sci USA 90, 5889-5892
8. Brenner S, Elgar G, Sandford R, Macrae A, Venkatesh B et al. (1993) Characterization of the pufferfish (Fugu) genome as a compact model vertebrate genome. Nature 366, 265-268
9. Brown HJ, Sutherland JA, Cook A, Bannister AJ, Kouzarides T (1995) An inhibitor domain in c-Fos regulates activation domains containing the HOB1 motif. EMBO J 14, 124-131
10. Brown JR, Ye H, Bronson RT, Dikkes P, Greenberg ME (1996) A defect in nurturing in mice lacking the immediate early gene fosB. Cell, 86, 297-309
11. Chen YR, Wang X, Templeton D, Davis RJ, Tan TH (1996) The role of c-Jun N-terminal kinase (JNK) in apoptosis induced by ultraviolet C and gamma radiation. Duration of JNK activation may determine cell death and proliferation. J Biol Chem 271, 31929-31936
12. Chinenov Y, Kerppola TK (2001) Close encounters of many kinds: Fos-Jun interactions that mediate transcription regulatory specificity. Oncogene 20, 2438-2452
13. Chiu R, Angel P, Karin M (1989) Jun-B differs in its biological properties from, and is a negative regulator of, c-Jun. Cell 59, 979-986
14. Chou SY, Baichwal V, Ferrell JE Jr (1992) Inhibition of c-Jun DNA binding by mitogen-activated protein kinase. Mol Biol Cell 3, 1117-1130
15. Derijard B, Hibi M, Wu IH, Barrett T, Su B et al. (1994) JNK1: a protein kinase stimulated by UV light and Ha-Ras that binds and phosphorylates the c-Jun activation domain. Cell 76, 1025-1037
16. Ekker M, Akimenko MA, Allende ML, Smith R, Drouin G et al. (1997) Relationships among msx gene structure and function in zebrafish and other vertebrates. Mol Biol Evol 14, 1008-1022
17. Fisher F, Crouch DH, Jayaraman PS, Clark W, Gillespie DA et al. (1993) Transcription activation by Myc and Max: flanking sequences target activation to a subset of CACGTG motifs in vivo. EMBO J 12, 5075-5082
18. Freter RR, Irminger JC, Porter JA, Jones SD, Stiles CD (1992) A novel 7-nucleotide motif located in 3′ untranslated sequences of the immediate-early gene set mediates platelet-derived growth factor induction of the JE gene. Mol Cell Biol 12, 5288-5300
19. Fritz G, Kaina B (1999) Phosphorylation of the DNA repair protein APE/REF-1 by CKII affects redox regulation of AP-1. Oncogene 18, 1033-1040
20. Funk M, Poensgen B, Graulich W, Jerome V, Muller R (1997) A novel, transformation-relevant activation domain in Fos proteins. Mol Cell Biol 17, 537-544
21. Galtier N, Gouy M, Gautier C (1996) SEAVIEW and PHYLO_WIN: two graphic tools for sequence alignment and molecular phylogeny. Comput Appl Biosci 12, 543-548
22. Gruda MC, Kovary K, Metz R, Bravo R (1994) Regulation of Fra-1 and Fra-2 phosphorylation differs during the cell cycle of fibroblasts and phosphorylation in vitro by MAP kinase affects DNA binding activity. Oncogene 9, 2537-2547
23. Hai T, Curran T (1991) Cross-family dimerization of transcription factors Fos/Jun and ATF/CREB alters DNA binding specificity. Proc Natl Acad Sci USA 88, 3720-3724
24. Herdegen T, Leah JD (1998) Inducible and constitutive transcription factors in the mammalian nervous system: control of gene expression by Jun, Fos and Krox, and CREB/ATF proteins. Brain Res Brain Res Rev 28, 370-490
25. Hibi M, Lin A, Smeal T, Minden A, Karin M (1993) Identification of an oncoprotein- and UV-responsive protein kinase that binds and potentiates the c-Jun activation domain. Genes Dev 7, 2135-2148
26. Jooss KU, Funk M, Muller R (1994) An autonomous N-terminal transactivation domain in Fos protein plays a crucial role in transformation. EMBO J 13, 1467-1475
27. Kallunki T, Deng T, Hibi M, Karin M (1996) c-Jun can recruit JNK to phosphorylate dimerization partners via specific docking interactions. Cell 87, 929-939
28. Karlin S (1995) Statistical significance of sequence patterns in proteins. Curr Opin Struct Biol 5, 360-371
29. Kerppola TK, Curran T (1994) A conserved region adjacent to the basic domain is required for recognition of an extended DNA binding site by Maf/Nrl family proteins. Oncogene 9, 3149-3158
30. Knapik EW, Goodman A, Ekker M, Chevrette M, Delgado J et al. (1998) A microsatellite genetic linkage map for zebrafish. Nat Genet 18, 338-343
31. Li B, Tournier C, Davis RJ, Flavell RA (1999) Regulation of IL-4 expression by the transcription factor JunB during T helper cell differentiation. EMBO J 18, 4204-4232
32. Lin A, Frost J, Deng T, Smeal T (1992) Casein kinase II is a negative regulator of c-Jun DNA binding and AP-1 activity. Cell 70, 777-789..
33. May GH, Funk M, Black EJ, Clark W, Hussain S et al. (1998) An oncogenic mutation uncouples the v-Jun oncoprotein from positive regulation by the SAPK/JNK pathway in vivo. Curr Biol 8, 117-120
34. Metz R, Bannister AJ, Sutherland JA, Hagemeier C, O'Rourke EC et al. (1994a) c-Fos-induced activation of a TATA-box-containing promoter involves direct contact with TATA-box-binding protein. Mol Cell Biol 14, 6021-6029
35. Metz R, Kouzarides T, Bravo R (1994b) A C-terminal domain in FosB, absent in FosB/SF and Fra-1, which is able to interact with the TATA binding protein, is required for altered cell growth. EMBO J 13, 3832-3842
36. Meyer A, Kocher TD, Basasibwaki P, Wilson AC (1990) Monophyletic origin of Lake Victoria cichlid fishes suggested by mitochondrial DNA sequences. Nature 347, 550-553
37. Murakami M, Sonobe MH, Ui M, Kabuyama Y, Watanabe H et al. (1997) Phosphorylation and high level expression of Fra-2 in v-src transformed cells: a pathway of activation of endogenous AP-1. Oncogene 14, 2435-2444
38. Ofir R, Dwarki VJ, Rashid D, Verma IM (1990) Phosphorylation of the C terminus of Fos protein is required for transcriptional transrepression of the c-fos promoter. Nature 348, 80-82
39. Passegue E, Jochum W, Schorpp-Kistner M, Mohle-Steinlein U, Wagner EF (2001) Chronic myeloid leukemia with increased granulocyte progenitors in mice lacking junB expression in the myeloid lineage. Cell 104, 21-32
40. Perkins KK, Admon A, Patel N, Tjian R (1990) The Drosophila Fos-related AP-1 protein is a developmentally regulated transcription factor. Genes Dev 4, 822-834
41. Postlethwait JH, Yan YL, Gates MA, Horne S, Amores A et al. (1998) Vertebrate genome evolution and the zebrafish gene map. Nat Genet 18, 345-349
42. Shaulian E, Schreiber M, Piu F, Beeche M, Wagner EF et al. (2000) The mammalian UV response: c-Jun induction is required for exit from p53-imposed growth arrest. Cell 103, 897-907
43. Smith SF, Snell P, Gruetzner F, Bench AJ, Haaf T et al (2002) Analyses of the extent of shared synteny and conserved gene orders between the genome of Fugu rubripes and human 20q. Genome Res 12, 776-784
44. Sturmbauer C, Meyer A (1992) Genetic divergence, speciation and morphological stasis in a lineage of African cichlid fishes. Nature 358, 578-581
45. Sutherland JA, Cgok A, Bannister AJ, Kouzarides T (1992) Conserved motifs in Fos and Jun define a new class of activation domain. Genes Dev 6, 1810-1819
46. Tjian R, Maniatis T (1994) Transcriptional activation: a complex puzzle with few easy pieces. Cell 77, 5-8.
47. Triezenberg SJ (1995) Structure and function of transcriptional activation domains. Curr Opin Genet Dev 5, 190-196
48. Trower MK, Orton SM, Purvis IJ, Sanseau P, Riley J et al. (1996) Conservation of synteny between the genome of the pufferfish (Fugu rubripes) and the region on human chromosome 14 (14q24.3) associated with familial Alzheimer disease (AD3 locus). Proc Natl Acad Sci USA 93, 1366-1369
49. Vogt P (2001) Jun, the oncoprotein. Oncogene 20, 2365-2377
50. Weitzman JB, Fiette L, Matsuo K, Yaniv M (2000) JunD protects cells from p53-dependent senescence and apoptosis. Mol Cell 6, 1109-1119
51. Wittbrodt J, Meyer A, Schartl M (1998) More genes in fish? Bioessays 20, 511-515
52. Yen J, Wisdom RM, Tratner I, Verma IM (1991) An alternative spliced form of FosB is a negative regulator of transcriptional activation and transformation by Fos proteins. Proc Natl Acad Sci USA 88, 5077-5081
53. Zhang K, Chaillet JR, Perkins LA, Halazonetis TD, Perrimon N (1990) Drosophila homolog of the mammalian jun oncogene is expressed during embryonic development and activates transcription in mammalian cells. Proc Natl Acad Sci USA 87, 6281-6285