-
1
-
-
0026666132
-
Human dUTP pyrophosphatase: CDNA sequence and potential biological importance of the enzyme
-
McIntosh E.M., Ager D.D., Gadsden M.H., Haynes R.H. Human dUTP pyrophosphatase: cDNA sequence and potential biological importance of the enzyme. Proc. Natl Acad. Sci. USA. 89:1992;8020-8024.
-
(1992)
Proc. Natl Acad. Sci. USA
, vol.89
, pp. 8020-8024
-
-
McIntosh, E.M.1
Ager, D.D.2
Gadsden, M.H.3
Haynes, R.H.4
-
2
-
-
0030587564
-
Human dUTP pyrophosphatase: Uracil recognition by a beta hairpin and active sites formed by three separate subunits
-
Mol C.D., Harris J.M., McIntosh E.M., Tainer J.A. Human dUTP pyrophosphatase: uracil recognition by a beta hairpin and active sites formed by three separate subunits. Structure. 4:1996;1077-1092.
-
(1996)
Structure
, vol.4
, pp. 1077-1092
-
-
Mol, C.D.1
Harris, J.M.2
McIntosh, E.M.3
Tainer, J.A.4
-
3
-
-
0027278557
-
Instability and decay of the primary structure of DNA
-
Lindahl T. Instability and decay of the primary structure of DNA. Nature. 362:1993;709-715.
-
(1993)
Nature
, vol.362
, pp. 709-715
-
-
Lindahl, T.1
-
4
-
-
0037115911
-
Uracil in DNA - Occurrence, consequences and repair
-
doi:10.1038/sj.onc.1205996
-
Krokan H.E., Drablos F., Slupphaug G. Uracil in DNA - occurrence, consequences and repair. Oncogene. 21:2002;8935-8948. doi:10.1038/sj.onc.1205996.
-
(2002)
Oncogene
, vol.21
, pp. 8935-8948
-
-
Krokan, H.E.1
Drablos, F.2
Slupphaug, G.3
-
5
-
-
0026808986
-
Dcd (dCTP deaminase) gene of Escherichia coli: Mapping, cloning, sequencing, and identification as a locus of suppressors of lethal dut (dUTPase) mutations
-
Wang L., Weiss B. dcd (dCTP deaminase) gene of Escherichia coli: mapping, cloning, sequencing, and identification as a locus of suppressors of lethal dut (dUTPase) mutations. J. Bacteriol. 174:1992;5647-5653.
-
(1992)
J. Bacteriol.
, vol.174
, pp. 5647-5653
-
-
Wang, L.1
Weiss, B.2
-
6
-
-
0018879283
-
The modulation of the thymidine triphosphate pool of Chinese hamster cells by dCMP deaminase and UDP reductase. Thymidine auxotrophy induced by CTP in dCMP deaminase-deficient lines
-
de Saint Vincent B.R., Dechamps M., Buttin G. The modulation of the thymidine triphosphate pool of Chinese hamster cells by dCMP deaminase and UDP reductase. Thymidine auxotrophy induced by CTP in dCMP deaminase-deficient lines. J. Biol. Chem. 255:1980;162-167.
-
(1980)
J. Biol. Chem.
, vol.255
, pp. 162-167
-
-
De Saint Vincent, B.R.1
Dechamps, M.2
Buttin, G.3
-
7
-
-
0017888335
-
Deoxycytidylate deaminase from Bacillus subtilis. Purification, characterization, and physiological function
-
Mollgaard H., Neuhard J. Deoxycytidylate deaminase from Bacillus subtilis. Purification, characterization, and physiological function. J. Biol. Chem. 253:1978;3536-3542.
-
(1978)
J. Biol. Chem.
, vol.253
, pp. 3536-3542
-
-
Mollgaard, H.1
Neuhard, J.2
-
8
-
-
0031744571
-
Hyperthermophiles and the problem of DNA instability
-
Grogan D.W. Hyperthermophiles and the problem of DNA instability. Mol. Microbiol. 28:1998;1043-1049.
-
(1998)
Mol. Microbiol.
, vol.28
, pp. 1043-1049
-
-
Grogan, D.W.1
-
9
-
-
0034175750
-
The question of DNA repair in hyperthermophilic archaea
-
Grogan D.W. The question of DNA repair in hyperthermophilic archaea. Trends Microbiol. 8:2000;180-185.
-
(2000)
Trends Microbiol.
, vol.8
, pp. 180-185
-
-
Grogan, D.W.1
-
10
-
-
0037837811
-
The Methanococcus jannaschii dCTP deaminase is a bifunctional deaminase and diphosphatase
-
doi:10.1074/jbc.M212460200
-
Li H., Xu H., Graham D.E., White R.H. The Methanococcus jannaschii dCTP deaminase is a bifunctional deaminase and diphosphatase. J. Biol. Chem. 278:2003;11100-11106. doi:10.1074/jbc.M212460200.
-
(2003)
J. Biol. Chem.
, vol.278
, pp. 11100-11106
-
-
Li, H.1
Xu, H.2
Graham, D.E.3
White, R.H.4
-
11
-
-
17744410903
-
A bifunctional dCTP deaminase-dUTP nucleotidohydrolase from the hyperthermophilic archeon Methanococcus jannaschii
-
doi:10.1074/jbc.M213010200
-
Bjornberg O., Neuhard J., Nyman P.O. A bifunctional dCTP deaminase-dUTP nucleotidohydrolase from the hyperthermophilic archeon Methanococcus jannaschii. J. Biol. Chem. 278:2003;20667-20672. doi:10.1074/jbc.M213010200.
-
(2003)
J. Biol. Chem.
, vol.278
, pp. 20667-20672
-
-
Bjornberg, O.1
Neuhard, J.2
Nyman, P.O.3
-
12
-
-
0029945504
-
Pseudouridine synthases: Four families of enzymes containing a putative uridine-binding motif also conserved in dUTPases and dCTP deaminases
-
Koonin E.V. Pseudouridine synthases: four families of enzymes containing a putative uridine-binding motif also conserved in dUTPases and dCTP deaminases. Nucl. Acids Res. 24:1996;2411-2415.
-
(1996)
Nucl. Acids Res.
, vol.24
, pp. 2411-2415
-
-
Koonin, E.V.1
-
13
-
-
0025293893
-
Protein sequence comparisons show that the 'pseudoproteases' encoded by poxviruses and certain retroviruses belong to the deoxyuridine triphosphatase family
-
McGeoch D.J. Protein sequence comparisons show that the 'pseudoproteases' encoded by poxviruses and certain retroviruses belong to the deoxyuridine triphosphatase family. Nucl. Acids Res. 18:1990;4105-4110.
-
(1990)
Nucl. Acids Res.
, vol.18
, pp. 4105-4110
-
-
McGeoch, D.J.1
-
14
-
-
0033555756
-
Crystal structure of dUTPase from equine infectious anaemia virus; Active site metal binding in a substrate analogue complex
-
Dauter Z., Persson R., Rosengren A.M., Nyman P.O., Wilson K.S., Cedergren-Zeppezauer E.S. Crystal structure of dUTPase from equine infectious anaemia virus; active site metal binding in a substrate analogue complex. J. Mol. Biol. 285:1999;655-673.
-
(1999)
J. Mol. Biol.
, vol.285
, pp. 655-673
-
-
Dauter, Z.1
Persson, R.2
Rosengren, A.M.3
Nyman, P.O.4
Wilson, K.S.5
Cedergren-Zeppezauer, E.S.6
-
15
-
-
0035215909
-
The nature of enzymes involved in uracil-DNA repair: Isoform characteristics of proteins responsible for nuclear and mitochondrial genomic integrity
-
Caradonna S., Muller-Weeks S. The nature of enzymes involved in uracil-DNA repair: isoform characteristics of proteins responsible for nuclear and mitochondrial genomic integrity. Curr. Protein Pept. Sci. 2:2001;335-347.
-
(2001)
Curr. Protein Pept. Sci.
, vol.2
, pp. 335-347
-
-
Caradonna, S.1
Muller-Weeks, S.2
-
16
-
-
0030462573
-
The dUTPases from herpes simplex virus type 1 and mouse mammary tumour virus are less specific than the Escherichia coli enzyme
-
Bjornberg O., Nyman P.O. The dUTPases from herpes simplex virus type 1 and mouse mammary tumour virus are less specific than the Escherichia coli enzyme. J. Gen. Virol. 77:1996;3107-3111.
-
(1996)
J. Gen. Virol.
, vol.77
, pp. 3107-3111
-
-
Bjornberg, O.1
Nyman, P.O.2
-
17
-
-
0035215853
-
The role of retroviral dUTPases in replication and virulence
-
Payne S.L., Elder J.H. The role of retroviral dUTPases in replication and virulence. Curr. Protein Pept. Sci. 2:2001;381-388.
-
(2001)
Curr. Protein Pept. Sci.
, vol.2
, pp. 381-388
-
-
Payne, S.L.1
Elder, J.H.2
-
18
-
-
0032513231
-
Biochemical and phylogenetic characterization of the dUTPase from the archaeal virus SIRV
-
Prangishvili D., Klenk H.P., Jakobs G., Schmiechen A., Hanselmann C., Holz I., Zillig W. Biochemical and phylogenetic characterization of the dUTPase from the archaeal virus SIRV. J. Biol. Chem. 273:1998;6024-6029.
-
(1998)
J. Biol. Chem.
, vol.273
, pp. 6024-6029
-
-
Prangishvili, D.1
Klenk, H.P.2
Jakobs, G.3
Schmiechen, A.4
Hanselmann, C.5
Holz, I.6
Zillig, W.7
-
19
-
-
0036304598
-
The structure of Escherichia coli cytosine deaminase
-
doi:10.1006/jmbi.2001.5277
-
Ireton G.C., McDermott G., Black M.E., Stoddard B.L. The structure of Escherichia coli cytosine deaminase. J. Mol. Biol. 315:2002;687-697. doi:10.1006/jmbi.2001.5277.
-
(2002)
J. Mol. Biol.
, vol.315
, pp. 687-697
-
-
Ireton, G.C.1
McDermott, G.2
Black, M.E.3
Stoddard, B.L.4
-
20
-
-
0028057520
-
Cytidine deaminase. The 2.3 Å crystal structure of an enzyme: Transition-state analog complex
-
Betts L., Xiang S., Short S.A., Wolfenden R., Carter C.W. Jr. Cytidine deaminase. The 2.3 Å crystal structure of an enzyme: transition-state analog complex. J. Mol. Biol. 235:1994;635-656.
-
(1994)
J. Mol. Biol.
, vol.235
, pp. 635-656
-
-
Betts, L.1
Xiang, S.2
Short, S.A.3
Wolfenden, R.4
Carter C.W., Jr.5
-
21
-
-
0026595757
-
Crystal structure of a dUTPase
-
Cedergren-Zeppezauer E.S., Larsson G., Nyman P.O., Dauter Z., Wilson K.S. Crystal structure of a dUTPase. Nature. 355:1992;740-743.
-
(1992)
Nature
, vol.355
, pp. 740-743
-
-
Cedergren-Zeppezauer, E.S.1
Larsson, G.2
Nyman, P.O.3
Dauter, Z.4
Wilson, K.S.5
-
22
-
-
12644295057
-
Crystal structure of dUTP pyrophosphatase from feline immunodeficiency virus
-
Prasad G.S., Stura E.A., McRee D.E., Laco G.S., Hasselkus-Light C., Elder J.H., Stout C.D. Crystal structure of dUTP pyrophosphatase from feline immunodeficiency virus. Protein Sci. 5:1996;2429-2437.
-
(1996)
Protein Sci.
, vol.5
, pp. 2429-2437
-
-
Prasad, G.S.1
Stura, E.A.2
McRee, D.E.3
Laco, G.S.4
Hasselkus-Light, C.5
Elder, J.H.6
Stout, C.D.7
-
23
-
-
0029882967
-
Crystal structure of the Escherichia coli dUTPase in complex with a substrate analogue (dUDP)
-
Larsson G., Svensson L.A., Nyman P.O. Crystal structure of the Escherichia coli dUTPase in complex with a substrate analogue (dUDP). Nature Struct. Biol. 3:1996;532-538.
-
(1996)
Nature Struct. Biol.
, vol.3
, pp. 532-538
-
-
Larsson, G.1
Svensson, L.A.2
Nyman, P.O.3
-
24
-
-
0033831995
-
Structures of feline immunodeficiency virus dUTP pyrophosphatase and its nucleotide complexes in three crystal forms
-
Prasad G.S., Stura E.A., Elder J.H., Stout C.D. Structures of feline immunodeficiency virus dUTP pyrophosphatase and its nucleotide complexes in three crystal forms. Acta Crystallog. sect. D. 56:2000;1100-1109.
-
(2000)
Acta Crystallog. sect. D
, vol.56
, pp. 1100-1109
-
-
Prasad, G.S.1
Stura, E.A.2
Elder, J.H.3
Stout, C.D.4
-
25
-
-
0030755997
-
Flexible glycine rich motif of Escherichia coli deoxyuridine triphosphate nucleotidohydrolase is important for functional but not for structural integrity of the enzyme
-
Vertessy B.G. Flexible glycine rich motif of Escherichia coli deoxyuridine triphosphate nucleotidohydrolase is important for functional but not for structural integrity of the enzyme. Proteins: Struct. Funct. Genet. 28:1997;568-579.
-
(1997)
Proteins: Struct. Funct. Genet.
, vol.28
, pp. 568-579
-
-
Vertessy, B.G.1
-
27
-
-
0032167573
-
The refined structure of dUTPase from Escherichia coli
-
Dauter Z., Wilson K.S., Larsson G., Nyman P.O., Cedergren-Zeppezauer E.S. The refined structure of dUTPase from Escherichia coli. Acta Crystallog. sect. D. 54:1998;735-749.
-
(1998)
Acta Crystallog. sect. D
, vol.54
, pp. 735-749
-
-
Dauter, Z.1
Wilson, K.S.2
Larsson, G.3
Nyman, P.O.4
Cedergren-Zeppezauer, E.S.5
-
28
-
-
0036468397
-
Coupling of folding and binding for unstructured proteins
-
Dyson H.J., Wright P.E. Coupling of folding and binding for unstructured proteins. Curr. Opin. Struct. Biol. 12:2002;54-60.
-
(2002)
Curr. Opin. Struct. Biol.
, vol.12
, pp. 54-60
-
-
Dyson, H.J.1
Wright, P.E.2
-
29
-
-
0032749078
-
Intrinsically unstructured proteins: Re-assessing the protein structure-function paradigm
-
Wright P.E., Dyson H.J. Intrinsically unstructured proteins: re-assessing the protein structure-function paradigm. J. Mol. Biol. 293:1999;321-331.
-
(1999)
J. Mol. Biol.
, vol.293
, pp. 321-331
-
-
Wright, P.E.1
Dyson, H.J.2
-
30
-
-
0031012272
-
Backbone and side chain dynamics of lac repressor headpiece (1-56) and its complex with DNA
-
Slijper M., Boelens R., Davis A.L., Konings R.N., van der Marel G.A., van Boom J.H., Kaptein R. Backbone and side chain dynamics of lac repressor headpiece (1-56) and its complex with DNA. Biochemistry. 36:1997;249-254.
-
(1997)
Biochemistry
, vol.36
, pp. 249-254
-
-
Slijper, M.1
Boelens, R.2
Davis, A.L.3
Konings, R.N.4
Van der Marel, G.A.5
Van Boom, J.H.6
Kaptein, R.7
-
31
-
-
11644261806
-
Automated docking using a Lamarckian genetic algorithm and empirical binding free energy function
-
Morris G.M., Goodsell D.S., Halliday R.S., Huey R., Hart W.E., Belew R.K., Olson A.J. Automated docking using a Lamarckian genetic algorithm and empirical binding free energy function. J. Comput. Chem. 19:1998;1639-1662.
-
(1998)
J. Comput. Chem.
, vol.19
, pp. 1639-1662
-
-
Morris, G.M.1
Goodsell, D.S.2
Halliday, R.S.3
Huey, R.4
Hart, W.E.5
Belew, R.K.6
Olson, A.J.7
-
32
-
-
0029820083
-
Kinetic characterization of dUTPase from Escherichia coli
-
Larsson G., Nyman P.O., Kvassman J.O. Kinetic characterization of dUTPase from Escherichia coli. J. Biol. Chem. 271:1996;24010-24016.
-
(1996)
J. Biol. Chem.
, vol.271
, pp. 24010-24016
-
-
Larsson, G.1
Nyman, P.O.2
Kvassman, J.O.3
-
33
-
-
0038482076
-
Crystal structure of yeast cytosine deaminase. Insights into enzyme mechanism and evolution
-
doi:10.1074/jbc.M300874200
-
Ko T.P., Lin J.J., Hu C.Y., Hsu Y.H., Wang A.H., Liaw S.H. Crystal structure of yeast cytosine deaminase. Insights into enzyme mechanism and evolution. J. Biol. Chem. 278:2003;19111-19117. doi:10.1074/jbc.M300874200.
-
(2003)
J. Biol. Chem.
, vol.278
, pp. 19111-19117
-
-
Ko, T.P.1
Lin, J.J.2
Hu, C.Y.3
Hsu, Y.H.4
Wang, A.H.5
Liaw, S.H.6
-
34
-
-
0037176913
-
Crystal structure of the tetrameric cytidine deaminase from Bacillus subtilis at 2.0 Å resolution
-
doi:10.1021/bi011849a
-
Johansson E., Mejlhede N., Neuhard J., Larsen S. Crystal structure of the tetrameric cytidine deaminase from Bacillus subtilis at 2.0 Å resolution. Biochemistry. 41:2002;2563-2570. doi:10.1021/bi011849a.
-
(2002)
Biochemistry
, vol.41
, pp. 2563-2570
-
-
Johansson, E.1
Mejlhede, N.2
Neuhard, J.3
Larsen, S.4
-
35
-
-
0031059866
-
Processing of X-ray diffraction data collected in oscillation mode
-
C.W. Jr. Carter, Sweet R.M. New York: Academic Press
-
Otwinowski Z., Minor W. Processing of X-ray diffraction data collected in oscillation mode. Carter C.W. Jr, Sweet R.M. Methods in Enzymology. vol. 276:1997;307-325 Academic Press, New York.
-
(1997)
Methods in Enzymology
, vol.276
, pp. 307-325
-
-
Otwinowski, Z.1
Minor, W.2
-
37
-
-
85031141994
-
-
La Fortelle, E. d. & Bricogne, G. (1997). Maximum-likelihood heavy-atom parameter refinement for multiple isomorphous replacement and multiwavelength anomalous diffraction methods. In Methods in Enzymology (Carter, C. W., Jr. & Sweet, R. M., eds), vol. 277, pp. 173-207, Academic Press, New York
-
La Fortelle, E. d. & Bricogne, G. (1997). Maximum-likelihood heavy-atom parameter refinement for multiple isomorphous replacement and multiwavelength anomalous diffraction methods. In Methods in Enzymology (Carter, C. W., Jr. & Sweet, R. M., eds), vol. 277, pp. 173-207, Academic Press, New York.
-
-
-
-
38
-
-
0032790081
-
XtalView/Xfit - A versatile program for manipulating atomic coordinates and electron density
-
McRee D.E. XtalView/Xfit - a versatile program for manipulating atomic coordinates and electron density. J. Struct. Biol. 125:1999;156-165.
-
(1999)
J. Struct. Biol.
, vol.125
, pp. 156-165
-
-
McRee, D.E.1
-
39
-
-
3543012707
-
Crystallography & NMR system: A new software suite for macromolecular structure determination
-
Brunger A.T., Adams P.D., Clore G.M., DeLano W.L., Gros P., Grosse-Kunstleve R.W., et al. Crystallography & NMR system: a new software suite for macromolecular structure determination. Acta Crystallog. sect. D. 54:1998;905-921.
-
(1998)
Acta Crystallog. sect. D
, vol.54
, pp. 905-921
-
-
Brunger, A.T.1
Adams, P.D.2
Clore, G.M.3
DeLano, W.L.4
Gros, P.5
Grosse-Kunstleve, R.W.6
-
40
-
-
0030880598
-
-
Sheldrick, G. M. & Schneider, T. R. (1997). SHELXL: high resolution refinement. In Methods in Enzymology (Carter, C. W., Jr. & Sweet, R. M., eds), vol. 277, pp. 319-343, Academic Press, New York
-
Sheldrick, G. M. & Schneider, T. R. (1997). SHELXL: high resolution refinement. In Methods in Enzymology (Carter, C. W., Jr. & Sweet, R. M., eds), vol. 277, pp. 319-343, Academic Press, New York.
-
-
-
|