Rendering of ray-traced images of molecular models on personal computers

Computers and Chemistry

Volumn 21, Issue 1, 1997, Pages 25-34

  Pacios, L Fernández ^a  

^a UNIVERSIDAD POLITÉCNICA DE MADRID   (Spain)

Author keywords

Molecular graphics; Molecular models; Molecular surfaces; Personal computers; Protein data bank files; Ray tracing

Indexed keywords

EID: 0041577102     PISSN: 00978485     EISSN: None     Source Type: Journal    
DOI: 10.1016/s0097-8485(96)00008-3     Document Type: Article

References (33)

1. Abola E., Bernstein F. C., Bryant S., Koetzle T. F. & Weng J. (1987) Crystallographic Databases - Information Content, Software Systems, Scientific Applications (Edited by Allen F., Bergerhoff G. & Seivers R.), pp. 107-132. Data Commission of the Int. Union of Crystallography, Bonn/Cambridge/Chester. (Available via the World-Wide Web from http://www.pdb.bnl.gov).
2. Anger S., Bennett S. A., Buck D. K., Collins A. A., Enzmann A., Farmer D., Muir D., Pulver B., Skinner R., Taylor S., Wells D. & Young C. (the POV-Ray Team arranged in alphabetical order) (1993) Persistence of Vision Raytracer, Official Version 2.2.
3. Bacon D. & Anderson W. F. (1988) J. Mol. Graphics 6, 219.
4. Bader R. F. W. (1990) Atoms in Molecules. A Quantum Theory. Clarendon Press, Oxford.
5. Berstein F. C., Koetzle T. F., Williams G. J. B., Meyer E. F., Brice M. D., Rodgers J. R., Kennard O., Shimanouchi T. & Tasumi M. (1977) J. Mol. Biol. 112, 535.
6. Bowie J. E. & Olson A. J. (Eds) (1995) Data Visualization in Molecular Science. Addison Wesley, Reading, MA.
7. Clementi E., Cavallone F. & Scordamaglia, R. (1977) J. Am. Chem. Soc. 99, 5531.
8. Dickerson R. E. & Drew H. R. (1981) Proc. Natl. Acad. Sci. USA 78, 7318.
9. Dean J. A. (Ed.) (1985) Lange's Handbook of Chemistry. McGraw Hill, New York.
10. Dion A. S. (1994) J. Mol. Graphics 12, 41.
11. Eisenberg D. (1984) Ann. Rev. Biochem. 53, 595.
12. Gavezzotti A. (1983) J. Am. Chem. Soc. 105, 5220.
13. Glassner S. A. (1989) An Introduction to Raytracing. Academic Press, New York.
14. Holmgren A. & Branden C. I. (1989) Nature 342, 248.
15. Kim S., Yoon C. W., Mhin B. J., Kim H. S. & Kim K. S. (1992) J. Mol. Graphics 10, 218.
16. Kyte J. & Doolittle R. F. (1982) J. Mol. Biol. 157, 105.
17. Merritt E. & Murphy M. (1994) Acta Crystallogr. D. 50, 869.
18. Micrografx, Inc. (1994) Picture Publisher 5.0. Richardson, TX.
19. Mondragon A. & Harrison S. C. (1991) J. Mol. Biol. 219, 321.
20. O'Shea E. K., Klemm J. D., Kim P. S. & Alber T. (1991) Science 254, 539.
21. Pacios L. F. (1994) Computers Chem. 18, 377.
22. Pacios L. F. (1995a) J. Mol. Mod. 1, 47.
23. Pacios L. F. (1995b) Chem. Phys. Lett. 242, 325.
24. Pacios L. F. (1995c) J. Comp. Chem. 16, 133.
25. Pauling L. (1960) The Nature of Chemical Bond, 3rd edn, Chapter 7. Cornell University Press, New York.
26. Phong B. T. (1987) Communications ACM 18, 311.
27. Richards F. M. (1977) Ann. Rev. Biophys. Bioeng. 6, 151.
28. Richards F. M. (1985) Methods Enzymology 115, 440.
29. Richards W. G. (Ed.) (1989) Computer-Aided Molecular Design. IBC Ltd, London.
30. Takano T. & Dickerson R. E. (1981) J. Mol. Biol. 153, 79 and 95.
31. Wegner T. (1992) Image Lab. Waite Group Press, Corte Madera, CA.
32. Weiner S. J., Kollman P. A., Case D. A., Singh U. C., Ghio C., Alagona G. & Profeta S. (1984) J. Am. Chem. Soc. 106, 765.
33. Wells D. & Young C. (1993) Ray-Tracing Creations. Waite Group Press, Corte Madera, CA.