UNIVIS-2000: An indigenously developed comprehensive visualization package

Current Science

Volumn 80, Issue 10, 2001, Pages 1296-1301

  Limaye, Ajay C ^a,b   Gadre, Shridhar R ^b  

^a AUSTRALIAN NATIONAL UNIVERSITY   (Australia)

^b UNIVERSITY OF PUNE   (India)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 0041461917     PISSN: 00113891     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (17)

1. MSV: Developed at the molecular graphics laboratory of the Scripps Research Institute. See Sanner, M. F., J. Mol. Graphics Modelling, 1999, 17, 57-61. [http://www.scripps.edu/pub/olson-web/people/sanner/home.html].
2. PMV: Also developed at the molecular graphics laboratory of the Scripps Research Institute. [http://www.scripps.edu/ pub/olson-web/share/python/pmv/webpmv.html].
3. Visual Molecular Dynamics (VMD) package allowing visualization and analysis of proteins, amino acids, lipid bilayer assemblies, etc., developed by the Theoretical Biophysics Group at the University of Illinois. For details, see Humphrey, W., Dalke, A. and Chulten, K., J. Mol. Graphics, 1996, 14, 33-38. [http://www.ks.uiuc.edu/Research/vmd/].
4. Raster3D Photorealistic Molecular Graphics: Generates high-quality raster images of proteins or other molecules. It also renders spheres, triangles, cylinders and quadric surfaces with specular highlighting. Developed by the Biomolecular Structure Center at the University of Washington. See Merritt, E. A. and Bacon, D. J., Methods Enzymol., 1997, 277, 505-524. [http://www.bmsc.washington.edu/raster3d/raster3d.html].
5. PYMOL developed by DeLano, W. L., at the DeLano Scientific, generates molecular images and movies, cf. [http://pymol. sourceforge.net].
6. CyberMol developed by Yoshida, H., at the University of Hiroshima, enables the visualization of molecular models on www by the use of VRML viewer, [http://vb101.chem.sci. hiroshima-u.ac.jp/CyberMol].
7. Protein Explorer developed by Martz, E., at the University of Massachusetts, [http://www.umass.edu/microbio/rasmol].
8. MOLDA is a molecular-model building program that provides views in VRML format. Developed by Yoshida, H., at the University of Hiroshima, [http://cssj.chem.sci.hiroshima-u.ac.jp/ molda/molda htm].
9. Connolly, M. L., Molecular Surfaces: A Review [http://www. netsci.org/science/compuchem/feature14.html]. For earlier reviews on molecular surfaces, see Connolly, M. L., J. Math. Chem., 1994, 15, 339-352; Biopolymers, 1992, 32, 1215-1236; Comp. Chem., 1991, 15, 37-45. See also a review on molecular surfaces by Mezey, P., in Reviews in Computational Chemistry (eds Lipkowitz, K. and Boyd, D.), VCH, Weinheim, 1990, pp. 265-294. [http://www.netsci.org/Science/Compchem/feature14. html].
10. Connolly, M. L., Molecular Surfaces: A Review [http://www. netsci.org/science/compuchem/feature14.html]. For earlier reviews on molecular surfaces, see Connolly, M. L., J. Math. Chem., 1994, 15, 339-352; Biopolymers, 1992, 32, 1215-1236; Comp. Chem., 1991, 15, 37-45. See also a review on molecular surfaces by Mezey, P., in Reviews in Computational Chemistry (eds Lipkowitz, K. and Boyd, D.), VCH, Weinheim, 1990, pp. 265-294. [http://www.netsci.org/Science/Compchem/feature14. html].
11. Connolly, M. L., Molecular Surfaces: A Review [http://www. netsci.org/science/compuchem/feature14.html]. For earlier reviews on molecular surfaces, see Connolly, M. L., J. Math. Chem., 1994, 15, 339-352; Biopolymers, 1992, 32, 1215-1236; Comp. Chem., 1991, 15, 37-45. See also a review on molecular surfaces by Mezey, P., in Reviews in Computational Chemistry (eds Lipkowitz, K. and Boyd, D.), VCH, Weinheim, 1990, pp. 265-294. [http://www.netsci.org/Science/Compchem/feature14. html].
12. Connolly, M. L., Molecular Surfaces: A Review [http://www. netsci.org/science/compuchem/feature14.html]. For earlier reviews on molecular surfaces, see Connolly, M. L., J. Math. Chem., 1994, 15, 339-352; Biopolymers, 1992, 32, 1215-1236; Comp. Chem., 1991, 15, 37-45. See also a review on molecular surfaces by Mezey, P., in Reviews in Computational Chemistry (eds Lipkowitz, K. and Boyd, D.), VCH, Weinheim, 1990, pp. 265-294. [http://www.netsci.org/Science/Compchem/feature14. html].
13. Connolly, M. L., Molecular Surfaces: A Review [http://www. netsci.org/science/compuchem/feature14.html]. For earlier reviews on molecular surfaces, see Connolly, M. L., J. Math. Chem., 1994, 15, 339-352; Biopolymers, 1992, 32, 1215-1236; Comp. Chem., 1991, 15, 37-45. See also a review on molecular surfaces by Mezey, P., in Reviews in Computational Chemistry (eds Lipkowitz, K. and Boyd, D.), VCH, Weinheim, 1990, pp. 265-294. [http://www.netsci.org/Science/Compchem/feature14. html].
14. Gadre, S. R., in Computational Chemistry: Reviews of Current Trends (ed. Leszczynski, J.), World Scientific, Singapore, 1999, vol. 4, pp. 1-53.
15. Bader, R. F. W., Atoms in Molecules: A Quantum Theory, Oxford University Press, Oxford, 1990.
16. See Limaye, A. C., Inamdar, P. V., Dattawadkar, S. M., Gadre, S. R., J. Mol. Graphics, 1996, 14, 19-22.
17. The smaller version of UNIVIS-2000 is available free of cost to academic users. Please contact S.R.G. for further information.