Identification and quantification of differentially expressed transcripts in in vitro-produced bovine preimplantation stage embryos

Molecular Reproduction and Development

Volumn 66, Issue 2, 2003, Pages 105-114

  Tesfaye, Dawit ^a   Ponsuksili, Siriluck ^a   Wimmers, Klaus ^a   Gilles, Markus ^a   Schellander, Karl ^a  

^a UNIVERSITY OF BONN   (Germany)

Author keywords

Bovine preimplantation development; DDRT PCR; Differential gene expression; Real time quantitative PCR

Indexed keywords

COMPLEMENTARY DNA; RNA;

AMPLICON; ANIMAL CELL; ARTICLE; BLASTOCYST; CATTLE; DIFFERENTIAL DISPLAY; EMBRYO; EXPRESSED SEQUENCE TAG; GENE EXPRESSION; GENE IDENTIFICATION; MOLECULAR CLONING; MORULA; NONHUMAN; NUCLEOTIDE SEQUENCE; OOCYTE; PREIMPLANTATION EMBRYO; PRIORITY JOURNAL; PROTEIN EXPRESSION; QUANTITATIVE ANALYSIS; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; SEQUENCE ANALYSIS; VALIDATION PROCESS;

ANIMALS; BLASTOCYST; CATTLE; DNA, COMPLEMENTARY; EMBRYONIC AND FETAL DEVELOPMENT; EMBRYONIC DEVELOPMENT; EXPRESSED SEQUENCE TAGS; FEMALE; FERTILIZATION IN VITRO; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION, DEVELOPMENTAL; MORULA; NUCLEIC ACID HYBRIDIZATION; PREGNANCY; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; RNA, MESSENGER; TRANSCRIPTION, GENETIC;

BOVINAE;

EID: 0041353620     PISSN: 1040452X     EISSN: None     Source Type: Journal    
DOI: 10.1002/mrd.10338     Document Type: Article

References (54)

1. Adjaye J, Daniels R, Bolton V, Monk M. 1997. cDNA libraries from single human preimplantation embryos. Genomics 46:337-344.
2. Bauer D, Muller H, Reich J, Riedel H, Ahrenkiel V, Warthoe P, Strauss M. 1993. Identification of differentially expressed mRNA species by an improved display technique (DDRT-PCR). Nucleic Acids Res 21:4272-4280.
3. Bertolini M, Stephen WB, Hosup S, Luciana RB, Alice LM, Thomas RF, Gary BA. 2002. Growth, development, and gene expression by in vivo- and in vitro-produced day 7 and 16 bovine embryos. Mol Reprod Dev 63:318-328.
4. Brambrink T, Wabnitz P, Halter R, Klocke R, Carnwath J, Kues W, Wrenzycki C, Paul D, Niemann H. 2002. Application of cDNA arrays to monitor mRNA profiles in single preimplantation mouse embryos. BioTechniques 33:376-385.
5. Brunet-Simon A, Henrion G, Renard JP, Duranthon V. 2001. Onset of zygotic transcription and maternal transcript legacy in the rabbit embryo. Mol Reprod Dev 58:127-136.
6. Craig AW, Haghighat A, Yu AT, Sonenberg N. 1998. Interaction of polyadenylate-binding protein with the eIF4G homologue PAIP enhances translation. Nature 392:520-523.
7. Dalbies-Tran R, Mermillod P. 2003. Use of heterologous complemen-tary DNA array screening to analyse bovine oocyte transcriptome and its evolution during in vitro maturation. Biol Reprod 68:252-261.
8. Davis W, De Sousa PA, Schultz RM. 1996. Transient expression of translation initiation factor elF-4C during the 2-cell stage of preimplantation mouse embryo: Identification by mRNA differential display and the role of DNA replication in zygotic gene activation. Dev Biol 174:190-201.
9. De Sousa PA, Watson AJ, Schultz RM. 1998. Transient expression of a translation initiation factor is conservatively associated with embryonic gene activation in murine and bovine embryos. Biol Reprod 59:969-977.
10. Farin PW, Farin CE. 1995. Transfer of bovine embryos produced in vivo or in vitro: survival and fetal development. Biol Reprod 52:676-682.
11. Farin PW, Crosier AE, Farin CE. 2001. Influence of in vitro systems on embryo survival and fetal development in cattle. Theriogenology 55:151-170.
12. Frank S, Upender S, Hansen SH, Casanova JE. 1998. ARNO is a guanin nucleotide exchange factor for ADP-ribosylation factor 6. J Biol Chem 237:23-27.
13. Goto T, Jones GM, Lolatgis N, Pera MF, Trounson AO, Monk M. 2002. Identification and characterisation of known and novel transcripts expressed during the final stages of human oocyte maturation. Mol Reprod Dev 62:13-28.
14. Hartshorn C, John ER, Lawrence JW. 2003. Differential pattern of Xist RNA accumulation in single blastomers isolated from 8-cell stage mouse embryos following laser zona drilling. Mol Reprod Dev 64:41-51.
15. Hasler JF. 2000. In vitro production of cattle embryos: Problems with pregnancy and parturition. Hum Reprod 15:47-58.
16. Henrion G, Brunet A, Renard JP, Duranthon V. 1997. Identification of maternal transcripts that progressively disappear during the cleavage period of rabbit embryo. Mol Reprod Dev 47:353-362.
17. Hyttel P, Vuiff D, Avery B, Laurincik J, Greve T. 1996. Transcription and cell cycle-dependent development of intranuclear bodies and granules in two-cell bovine embryos. J Reprod Fertil 108:263-270.
18. Korinek V, Barker N, Willert K, Molenaar M, Roose J, Wagenaar G, Markman M, Lamers W, Destree O, Clevers H. 1998. Two members of the Tcf family implicated in Wnt/β-catenin signaling during embryogenesis in the mouse. Mol Cell Biol 18:1248-1256.
19. Kruip TA, den Daas JHG. 1997. In vitro produced and cloned embryos: Effects on pregnancy, parturition, and offspring. Theriogenology 47:43-52.
20. Lee KF, Chow JFC, Xu JS, Chan STH, Ip SM, Yeung WSB. 2001. A comparative study of gene expression in murine embryos developed in vivo, cultured in vitro, and co-cultured with human oviductal cells using messenger ribonucleic acid differential display. Biol Reprod 64:910-917.
21. Liang P, Pardee AB. 1992. Differential display of eukaryotic messenger RNA by means of the polymerase chain reaction. Science 257:967-971.
22. Liu Z, Foote RH. 1997. Effects of amino acids and α-amanitin on bovine embryo development in a simple protein free medium. Mol Reprod Dev 46:278-285.
23. Lonergan P, Khatir H, Piumi F, Rieger D, Humboldt P, Boland MP. 1999. Effect of time interval from insemination to first cleavage on the developmental characteristics, sex, and pregnancy rates following transfer of bovine preimplantation embryos. J Reprod Fertil 117:159-167.
24. McGraw S, Robert C, Massicotte L, Sirard MA. 2003. Quantification of histone acetyltransferase and histone deacetylase transcripts during early bovine embryo development. Biol Reprod 68:383-389.
25. Memili E, First NL. 1999. Control of gene expression at the onset of bovine embryonic development. Biol Reprod 61:1198-1207.
26. Memili E, Dominko T, First LN. 1998. Onset of transcription in bovine oocytes and preimplantation embryos. Mol Reprod Dev 51:36-41.
27. Mohan M, Ryder S, Claypool PL, Geisert RD, Malayer JR. 2002. Analysis of gene expression in bovine blastocyst produced in vitro using suppression-subtractive hybridization. Biol Reprod 67:447-453.
28. Natale DR, Kidder GM, Westhusin ME, Watson AJ. 2000. Assessment by differential display-RT-PCR of mRNA transcript transitions and α-amanitin sensitivity during bovine preattachment development. Mol Reprod Dev 55:152-163.
29. Natale DR, De Sousa PA, Westhusin ME, Watson AJ. 2001. Sensitivity of bovine blastocyt gene expression patterns to culture environment assessed by differential display RT-PCR. Reproduction 122:687-693.
30. Niemann H, Wrenzycki C. 2000. Alterations of expression of developmentally important genes in preimplantation bovine embryos by in vitro culture conditions: Implications for subsequent development. Theriogenology 53:21-34.
31. Pacheco-Trigon S, Hennequet-Antier C, Oudin JF, Piumi F, Renard JP, Duranthon V. 2002. Molecular characterization of genomic activities at the onset of zygotic transcription in mammals. Biol Reprod 67:1907-1918.
32. Parrish JJ, Susko-Parrish JL, Winer MA, First NL. 1988. Capacitation of bovine sperm by heparine. Biol Reprod 38:1171-1180.
33. Pierce KE, Rice JE, Sanchez JA, Brenner C, Wangh LJ. 2000. Real-time using molecular beacons for accurate detection of Y chromosome in single human blastomeres. Mol Hum Reprod 6:1155-1164.
34. Ponsuksili S, Tesfaye D, El-Halawany N, Schellander K, Wimmers K. 2002a. Stage-specific expressed sequence tags obtained during preimplantation bovine development by differential display RT-PCR and suppression subtractive hybridization. Prenat Diagn 22:1135-1142.
35. Ponsuksili S, Wimmers K, Adjaye J, Köster M, Mahabir E, Schneider H, Schellander K. 2002b. A source of expression profiling in single preimplantation bovine embryos. Theriogenology 57:1611-1624.
36. Rajeevan MS, Ranamukhaarachchi DG, Vernon SD, Unger ER. 2001. Use of real-time quantitative PCR to validate the results of cDNA array and differential display PCR technologies. Methods 25:443-451.
37. Rizos D, Lonergan P, Boland MP, Arroyo-Garcia R, Pintado B, de la Fuente J. 2002. Analysis of differential mRNA expression between bovine blastocysts produced in different culture systems: Implications for blastocyst quality. Biol Reprod 66:589-595.
38. Rizos D, Gutiérrez-Adán A, Pérez-Garnelo S, de la Fuente J, Boland MP, Lonergan P. 2003. Bovine embryo culture in the presence or absence of serum: Implications for embryo development, cryotolerance, and messenger RNA expression. Biol Reprod 68:236-243.
39. Robert C, Barnes FL, Hue I, Sirard MA. 2000. Subtractive hybridization used to identify mRNA associated with the maturation of bovine oocytes. Mol Reprod Dev 57:167-175.
40. Robert C, McGraw S, Massicotte L, Pravetoni M, Gandolfi F, Sirard MA. 2002. Quantification of housekeeping transcript levels during the development of bovine preimplantation embryos. Biol Reprod 67:1465-1472.
41. Rosenkrans CF, First NL. 1994. Effect of free amino acids and vitamins on cleavage and developmental rate of bovine zygotes in vitro. J Anim Sci 72:434-437.
42. Rothstein JL, Johnson D, Deloia JA, Skowronski J, Solter D, Knowles B. 1992. Gene expression during preimplantation mouse embryo. Genes Dev 6:1190-1201.
43. Schultz RM, Davis JR, Stein P, Svoboda P. 1999. Reprogramming of gene expression during preimplantation development. Mol Dev Evol 285:276-282.
44. Simon HU, Mills GB, Koslowski M, Hogg D, Branch D, Ishimi Y, Siminovitch KA. 1994. Molecular characterization of hNRP, a cDNA encoding a human nucleosom-assembly-protein-related gene product involved in the induction of cell proliferation. Biochem J 297:389-397.
45. Steuerwald N, Cohen J, Herrera RJ, Brenner CA. 1999. Analysis of gene expression in single oocytes and embryos by real time rapid cycle fluorescence monitored RT-PCR. Mol Hum Reprod 5:1034-1039.
46. Steuerwald N, Barritt JA, Adler R, Malter H, Schimmel T, Cohen J, Brenner CA. 2000a. Quantification of mtDNA in single oocytes, polar bodies, and sub cellular components by real time rapid cycle fluorescence monitored PCR. Zygote 8:209-215.
47. Steuerwald N, Cohen J, Herrera RJ, Brenner CA. 2000b. Quantification of mRNA in single oocytes and embryos by real time rapid cycle fluorescence monitored RT-PCR. Mol Hum Reprod 6:448-453.
48. Trounson A, Pushett D, MacLellan LJ, Lewis I, Gardner DK. 1994. Current status of IVM/IVF and embryo culture in humans and farm animals. Theriogenology 41:57-66.
49. User Bulletin # 2 ABI PRISM 7700 Sequence Detection System. 1997. (Updated 2001). Appl Biosystems 1-35.
50. Viuff D, Rickords L, Offenberg H, Hyttel P, Avery B, Greve T, Olsaker I, Williams JL, Callesen H, Thomsen PD. 1999. A high proportion of bovine blastocysts produced in vitro are mixoploid. Biol Reprod 60:1273-1278.
51. Wrenzycki C, Herrmann D, Carnwath JW, Niemann H. 1999. Alterations in the relative abundance of gene transcripts in preimplantation bovine embryos cultured in medium supplemented with either serum or PVA. Mol Reprod Dev 53:8-18.
52. Wrenzycki C, Herrmann D, Keskintepe L, Martins JA, Sirisathien S, Brackett B, Niemann H. 2001. Effects of culture system and protein supplementation on mRNA expression in preimplantation bovine embryos. Hum Reprod 16:893-901.
53. Zeng F, Schultz RM. 2003. Gene expression in mouse oocytes and preimplantation embryos: Use of suppression subtractive hybridization to identify oocyte- and embryo-specific genes. Biol Reprod 68:31-39.
54. Zimmermann WJ, Schultz RM. 1994. Analysis of gene expression in the preimplantation mouse embryo: Use of mRNA differential display. Dev Biol 91:5456-5460.