메뉴 건너뛰기




Volumn 5, Issue 9, 2003, Pages 730-736

Characterization of bacterial pectinolytic strains involved in the water retting process

Author keywords

[No Author keywords available]

Indexed keywords

BACILLUS; BACTERIA, AEROBIC; BACTERIA, ANAEROBIC; CANNABIS; CLOSTRIDIUM; DNA, BACTERIAL; DNA, RIBOSOMAL; FLAX; HAPLOTYPES; PECTINS; PHYLOGENY; POLYGALACTURONASE; RIBOTYPING; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY, NUCLEIC ACID; WATER MICROBIOLOGY;

EID: 0041350481     PISSN: 14622912     EISSN: None     Source Type: Journal    
DOI: 10.1046/j.1462-2920.2003.00462.x     Document Type: Article
Times cited : (65)

References (40)
  • 1
    • 0031722848 scopus 로고    scopus 로고
    • Structural effects on flax stems of three potential retting fungi
    • Akin, D.E., Rigsby, L.L., Henrikson, G., and Eriksson, K.E.L. (1998) Structural effects on flax stems of three potential retting fungi. Textile Res J 68: 515-519.
    • (1998) Textile Res J , vol.68 , pp. 515-519
    • Akin, D.E.1    Rigsby, L.L.2    Henrikson, G.3    Eriksson, K.E.L.4
  • 2
    • 0035940084 scopus 로고    scopus 로고
    • Enzyme-retting of flax and characterization of processed fibres
    • Akin, D.E., Foulk, J.A., Dodd, R.B., and McAlister, D.D. (2001) Enzyme-retting of flax and characterization of processed fibres. J Biotechnol 89: 193-203.
    • (2001) J Biotechnol , vol.89 , pp. 193-203
    • Akin, D.E.1    Foulk, J.A.2    Dodd, R.B.3    McAlister, D.D.4
  • 4
    • 0027351945 scopus 로고
    • Structural models of primary cell walls in flowering plants: Consistency of molecular structure with the physical properties of the walls during growth
    • Carpita, N.C., and Gibeaut, D.M. (1993) Structural models of primary cell walls in flowering plants: consistency of molecular structure with the physical properties of the walls during growth. Plant J 3: 1-30.
    • (1993) Plant J , vol.3 , pp. 1-30
    • Carpita, N.C.1    Gibeaut, D.M.2
  • 5
    • 84980243548 scopus 로고
    • The maceration of linen flax under anaerobic conditions
    • Chesson, A. (1978) The maceration of linen flax under anaerobic conditions. J Appl Bacteriol 45: 219-230.
    • (1978) J Appl Bacteriol , vol.45 , pp. 219-230
    • Chesson, A.1
  • 7
    • 0024297354 scopus 로고
    • Multiple sequence alignment with hierarchical clustering
    • Corpet, F. (1988) Multiple sequence alignment with hierarchical clustering. Nucleic Acids Res 16: 10881-10890.
    • (1988) Nucleic Acids Res , vol.16 , pp. 10881-10890
    • Corpet, F.1
  • 8
    • 0034023854 scopus 로고    scopus 로고
    • Preliminary results of tests facing with the controlled retting of hemp
    • Di Candilo, M., Ranalli, P., Bozzi, C., Focher, B., and Mastromei, G. (2000) Preliminary results of tests facing with the controlled retting of hemp. Ind Crops Prod 11: 197-203.
    • (2000) Ind Crops Prod , vol.11 , pp. 197-203
    • Di Candilo, M.1    Ranalli, P.2    Bozzi, C.3    Focher, B.4    Mastromei, G.5
  • 9
    • 0025096048 scopus 로고
    • Changes in microbial populations during anaerobic flax retting
    • Donaghy, J.A., Levette, P.N., and Haylock, R.W. (1990) Changes in microbial populations during anaerobic flax retting. J Appl Bacteriol 69: 634-641.
    • (1990) J Appl Bacteriol , vol.69 , pp. 634-641
    • Donaghy, J.A.1    Levette, P.N.2    Haylock, R.W.3
  • 10
    • 0028942475 scopus 로고
    • Identification of Azospirillum strains by restriction fragment length polymorphism of the 16S rDNA and of the histidine operon
    • Grifoni, A., Bazzicalupo, M., Di Serio, C., Fancelli, S., and Fani, R. (1995) Identification of Azospirillum strains by restriction fragment length polymorphism of the 16S rDNA and of the histidine operon. FEMS Microbiol Lett 127: 85-91.
    • (1995) FEMS Microbiol Lett , vol.127 , pp. 85-91
    • Grifoni, A.1    Bazzicalupo, M.2    Di Serio, C.3    Fancelli, S.4    Fani, R.5
  • 11
    • 0013024004 scopus 로고
    • Linen
    • Hamilton, I.T. (1986) Linen. Textiles 15: 30-34.
    • (1986) Textiles , vol.15 , pp. 30-34
    • Hamilton, I.T.1
  • 13
    • 0029818079 scopus 로고    scopus 로고
    • A polyphasic reassessment of the genus Paenibacillus, reclassification of Bacillus lautus (Nakamura 1984) as Paenibacillus lautus comb. nov. and of Bacillus peoriae (Montefusco et al. 1993) as Paenibacillus peoriae comb. nov. and emended descriptions of P. lautus and of P. peoriae
    • Heyndrickx, M., Vandemeulebroecke, K., Scheldeman, P., Kersters, K., de Vos, P., Logan, N.A., et al. (1996) A polyphasic reassessment of the genus Paenibacillus, reclassification of Bacillus lautus (Nakamura 1984) as Paenibacillus lautus comb. nov. and of Bacillus peoriae (Montefusco et al. 1993) as Paenibacillus peoriae comb. nov. and emended descriptions of P. lautus and of P. peoriae. Int J Syst Bacteriol 46: 988-1003.
    • (1996) Int J Syst Bacteriol , vol.46 , pp. 988-1003
    • Heyndrickx, M.1    Vandemeulebroecke, K.2    Scheldeman, P.3    Kersters, K.4    De Vos, P.5    Logan, N.A.6
  • 14
    • 0000732090 scopus 로고
    • Evolution of protein molecules
    • Munro, H.N. (ed.). New York: Academic Press
    • Jukes, T.H., and Cantor, C.R. (1969) Evolution of protein molecules. In Mammalian Protein Metabolism, Vol. 3. Munro, H.N. (ed.). New York: Academic Press, pp. 21-132.
    • (1969) Mammalian Protein Metabolism , vol.3 , pp. 21-132
    • Jukes, T.H.1    Cantor, C.R.2
  • 15
    • 0033666181 scopus 로고    scopus 로고
    • Production and partial purification and characterization of a thermo-alkalistable polygalacturonase from Bacillus sp. MG-cp-2
    • Kapoor, M., Beg, Q.K., Bhushan, B., Dadhich, K.S., and Hoondal, G.S. (2000) Production and partial purification and characterization of a thermo-alkalistable polygalacturonase from Bacillus sp. MG-cp-2. Process Biochem 36: 467-473.
    • (2000) Process Biochem , vol.36 , pp. 467-473
    • Kapoor, M.1    Beg, Q.K.2    Bhushan, B.3    Dadhich, K.S.4    Hoondal, G.S.5
  • 16
    • 0035069389 scopus 로고    scopus 로고
    • Application of an alkaline and thermostable polygalacturonase from Bacillus sp. MG-cp-2 in degumming of ramie (Boehmeria nivea) and sunn hemp (Crotalaria juncea) bast fibers
    • Kapoor, M., Beg, Q.K., Bhushan, B., Singh, K., Dadhich, K.S., and Hoondal, G.S. (2001) Application of an alkaline and thermostable polygalacturonase from Bacillus sp. MG-cp-2 in degumming of ramie (Boehmeria nivea) and sunn hemp (Crotalaria juncea) bast fibers. Process Biochem 36: 803-807.
    • (2001) Process Biochem , vol.36 , pp. 803-807
    • Kapoor, M.1    Beg, Q.K.2    Bhushan, B.3    Singh, K.4    Dadhich, K.S.5    Hoondal, G.S.6
  • 17
    • 0035191237 scopus 로고    scopus 로고
    • Applications of pectinases in the commercial sector: A review
    • Kashyap, D.R., Vohra, P.K., Chopra, S., and Tewari, R. (2001) Applications of pectinases in the commercial sector: a review. Bioresour Technol 77: 215-227.
    • (2001) Bioresour Technol , vol.77 , pp. 215-227
    • Kashyap, D.R.1    Vohra, P.K.2    Chopra, S.3    Tewari, R.4
  • 18
    • 0028889638 scopus 로고
    • Taxonomy and phylogeny of industrial solvent-producing clostridia
    • Keis, S., Bennett, C.F., Ward, V.K., and Jones, D.T. (1995) Taxonomy and phylogeny of industrial solvent-producing clostridia. Int J Syst Bacteriol 45: 693-705.
    • (1995) Int J Syst Bacteriol , vol.45 , pp. 693-705
    • Keis, S.1    Bennett, C.F.2    Ward, V.K.3    Jones, D.T.4
  • 19
    • 0035196515 scopus 로고    scopus 로고
    • Emended descriptions of Clostridium acetobutylicum and Clostridium beijerinckii, and descriptions of Clostridium saccharoperbutylacetonicum sp. nov. and Clostridium saccharobutylicum sp. nov.
    • Keis, S., Shaheen, R., and Jones, D.T. (2001) Emended descriptions of Clostridium acetobutylicum and Clostridium beijerinckii, and descriptions of Clostridium saccharoperbutylacetonicum sp. nov. and Clostridium saccharobutylicum sp. nov. Int J Syst Evol Microbiol 51: 2095-2103.
    • (2001) Int J Syst Evol Microbiol , vol.51 , pp. 2095-2103
    • Keis, S.1    Shaheen, R.2    Jones, D.T.3
  • 20
    • 0035811977 scopus 로고    scopus 로고
    • Purification and properties of a high-molecular-weight, alkaline exopolygalacturonase from a strain of Bacillus
    • Kobayashi, T., Higaki, N., Suzumatsu, A., Sawada, K., Hagihara, H., Kawai, S., and Ito, S. (2001) Purification and properties of a high-molecular-weight, alkaline exopolygalacturonase from a strain of Bacillus. Enzyme Microb Technol 5: 70-75.
    • (2001) Enzyme Microb Technol , vol.5 , pp. 70-75
    • Kobayashi, T.1    Higaki, N.2    Suzumatsu, A.3    Sawada, K.4    Hagihara, H.5    Kawai, S.6    Ito, S.7
  • 21
    • 0036139211 scopus 로고    scopus 로고
    • MEGA2: Molecular evolutionary genetics analysis software
    • Kumar, S., Tamura, K., Jakobsen, I.B., and Nei, M. (2001) MEGA2: molecular evolutionary genetics analysis software. Bioinformatics 17: 1244-1245.
    • (2001) Bioinformatics , vol.17 , pp. 1244-1245
    • Kumar, S.1    Tamura, K.2    Jakobsen, I.B.3    Nei, M.4
  • 22
    • 0014853011 scopus 로고
    • Similarities in the action patterns of exopolygalacturonate lyase and pectinesterase from Clostridium multifermentans
    • Lee, M., Miller, L., and Macmillan, J.D. (1970) Similarities in the action patterns of exopolygalacturonate lyase and pectinesterase from Clostridium multifermentans. J Bacteriol 103: 595-600.
    • (1970) J Bacteriol , vol.103 , pp. 595-600
    • Lee, M.1    Miller, L.2    Macmillan, J.D.3
  • 24
    • 33747333106 scopus 로고
    • Use of dinitrosalicylic acid reagent for determination of reducing sugar
    • Miller, G.L. (1959) Use of dinitrosalicylic acid reagent for determination of reducing sugar. Anal Chem 31: 426-428.
    • (1959) Anal Chem , vol.31 , pp. 426-428
    • Miller, G.L.1
  • 25
    • 0033028580 scopus 로고    scopus 로고
    • Relationship of Bacillus subtilis clades associated with strains 168 and W23: A proposal for Bacillus subtilis subsp. subtilis subsp. nov. and Bacillus subtilis subsp. spizizenii subsp. nov.
    • Nakamura, L.K., Roberts, M.S., and Cohan, F.M. (1999) Relationship of Bacillus subtilis clades associated with strains 168 and W23: a proposal for Bacillus subtilis subsp. subtilis subsp. nov. and Bacillus subtilis subsp. spizizenii subsp. nov. Int J Syst Bacteriol 49: 1211-1215.
    • (1999) Int J Syst Bacteriol , vol.49 , pp. 1211-1215
    • Nakamura, L.K.1    Roberts, M.S.2    Cohan, F.M.3
  • 26
    • 0001859849 scopus 로고    scopus 로고
    • The quality of combine-harvested fibre flax for industrials purposes depends on the degree of retting
    • Pallesan, B.E. (1996) The quality of combine-harvested fibre flax for industrials purposes depends on the degree of retting. Ind Crops Prod 5: 65-78.
    • (1996) Ind Crops Prod , vol.5 , pp. 65-78
    • Pallesan, B.E.1
  • 27
    • 0034010852 scopus 로고    scopus 로고
    • Frequency and biodiversity of 2,4-diacetylphloroglucinol-producing bacteria isolated from the maize rhizosphere at different stages of plant growth
    • Picard, C., Di Cello, F., Ventura, M., Fani, R., and Guckert, A. (2000) Frequency and biodiversity of 2,4-diacetylphloroglucinol-producing bacteria isolated from the maize rhizosphere at different stages of plant growth. Appl Environ Microbiol 66: 948-955.
    • (2000) Appl Environ Microbiol , vol.66 , pp. 948-955
    • Picard, C.1    Di Cello, F.2    Ventura, M.3    Fani, R.4    Guckert, A.5
  • 28
    • 0035704485 scopus 로고    scopus 로고
    • Microbial diversity of cultivatable bacteria associated with the North Sea bryozoan Flustra foliacea
    • Pukall, R., Kramer, I., Rohde, M., and Stackebrandt, E. (2001) Microbial diversity of cultivatable bacteria associated with the North Sea bryozoan Flustra foliacea. Syst Appl Microbiol 24: 623-633.
    • (2001) Syst Appl Microbiol , vol.24 , pp. 623-633
    • Pukall, R.1    Kramer, I.2    Rohde, M.3    Stackebrandt, E.4
  • 29
    • 0023375195 scopus 로고
    • The neighbor-joining method: A new method for reconstructing phylogenetic trees
    • Saitou, N., and Nei, M. (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4: 406-425.
    • (1987) Mol Biol Evol , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 30
    • 0034917190 scopus 로고    scopus 로고
    • Characterization of pectin lyase produced by an endophytic strain isolated from coffee cherries
    • Sakiyama, C.C., Paula, E.M., Pereira, P.C., Borges, A.C., and Silva, D.O. (2001) Characterization of pectin lyase produced by an endophytic strain isolated from coffee cherries. Lett Appl Microbiol 33: 117-121.
    • (2001) Lett Appl Microbiol , vol.33 , pp. 117-121
    • Sakiyama, C.C.1    Paula, E.M.2    Pereira, P.C.3    Borges, A.C.4    Silva, D.O.5
  • 31
    • 0035814473 scopus 로고    scopus 로고
    • Molecular cloning and sequencing of the gene encoding an exopolygalacturonase of a Bacillus isolate and properties of its recombinant enzyme
    • Sawada, K., Suzumatsu, A., Kobayashi, T., and Ito, S. (2001) Molecular cloning and sequencing of the gene encoding an exopolygalacturonase of a Bacillus isolate and properties of its recombinant enzyme. Biochim Biophys Acta 1568: 162-170.
    • (2001) Biochim Biophys Acta , vol.1568 , pp. 162-170
    • Sawada, K.1    Suzumatsu, A.2    Kobayashi, T.3    Ito, S.4
  • 33
    • 0002765478 scopus 로고
    • Role of microbial enzymes during retting and their effect on fibre characteristics
    • Sharma, H.S.S., and Van Sumere, S.F. (eds). Belfast: M, Publications
    • Sharma, H.S.S., Lefevre, J., and Boucaud, J. (1992) Role of microbial enzymes during retting and their effect on fibre characteristics. In The Biology and Processing of Flax. Sharma, H.S.S., and Van Sumere, S.F. (eds). Belfast: M, Publications, pp. 157-198.
    • (1992) The Biology and Processing of Flax , pp. 157-198
    • Sharma, H.S.S.1    Lefevre, J.2    Boucaud, J.3
  • 36
    • 0035957385 scopus 로고    scopus 로고
    • Pectate lyase A, an enzymatic subunit of the Clostridium cellulovorans cellulosome
    • Tamaru, Y., and Doi, R.H. (2001) Pectate lyase A, an enzymatic subunit of the Clostridium cellulovorans cellulosome. Proc Natl Acad Sci USA 98: 4125-4129.
    • (2001) Proc Natl Acad Sci USA , vol.98 , pp. 4125-4129
    • Tamaru, Y.1    Doi, R.H.2
  • 37
    • 0034980378 scopus 로고    scopus 로고
    • Clostridium felsineum and Clostridium acetobutylicum are two distinct species phylogenetically closely related
    • Tamburini, E., Daly, S., Steiner, U., Vandini, C., and Mastromei, G. (2001) Clostridium felsineum and Clostridium acetobutylicum are two distinct species phylogenetically closely related. Int J Syst Evol Microbiol 51: 963-966.
    • (2001) Int J Syst Evol Microbiol , vol.51 , pp. 963-966
    • Tamburini, E.1    Daly, S.2    Steiner, U.3    Vandini, C.4    Mastromei, G.5
  • 38
    • 0027418863 scopus 로고
    • Isolation and characterization of an extracellular glycosylated protein complex from Clostridium thermosaccharolyticum with pectin methylesterase and polygalacturonate hydrolase activity
    • Van Rijssel, M., Gerwig, G.J., and Hansen, T.A. (1993) Isolation and characterization of an extracellular glycosylated protein complex from Clostridium thermosaccharolyticum with pectin methylesterase and polygalacturonate hydrolase activity. Appl Environ Microbiol 59: 828-836.
    • (1993) Appl Environ Microbiol , vol.59 , pp. 828-836
    • Van Rijssel, M.1    Gerwig, G.J.2    Hansen, T.A.3
  • 39
    • 0027120401 scopus 로고
    • Rapid identification of bacteria of the Comamonadaceae with amplified ribosomal DNA-restriction analysis (ARDRA)
    • Vaneechoutte, M., Rossau, R., De Vos, P., Gillis, M, Janssens, D., Paepe, N., et al. (1992) Rapid identification of bacteria of the Comamonadaceae with amplified ribosomal DNA-restriction analysis (ARDRA). FEMS Microbiol Lett 93: 227-234.
    • (1992) FEMS Microbiol Lett , vol.93 , pp. 227-234
    • Vaneechoutte, M.1    Rossau, R.2    De Vos, P.3    Gillis, M.4    Janssens, D.5    Paepe, N.6
  • 40
    • 0034725943 scopus 로고    scopus 로고
    • Polygalacturonase is the key component in enzymatic retting of flax
    • Zhang, J., Henriksson, G., and Johansson, G. (2000) Polygalacturonase is the key component in enzymatic retting of flax. J Biotechnol 81: 85-89.
    • (2000) J Biotechnol , vol.81 , pp. 85-89
    • Zhang, J.1    Henriksson, G.2    Johansson, G.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.