Purification and Characterization of Formate Dehydrogenase from Ancylobacter aquaticus Strain KNK607M, and Cloning of the Gene

Bioscience, Biotechnology and Biochemistry

Volumn 67, Issue 4, 2003, Pages 720-728

  Nanba, Hirokazu ^a   Takaoka, Yasuko ^a   Hasegawa, Junzo ^a  

^a KANEKA CORPORATION   (Japan)

Author keywords

Ancylobacter aquaticus; NAD dependent formate dehydrogenase

Indexed keywords

ANCYLOBACTER; ANCYLOBACTER AQUATICUS; ESCHERICHIA COLI; MYCOBACTERIUM; PROKARYOTA; PSEUDOMONAS;

FORMATE DEHYDROGENASE; NICOTINAMIDE ADENINE DINUCLEOTIDE;

AMINO ACID SEQUENCE; ARTICLE; BACTERIAL GENE; ENZYMOLOGY; EURYARCHAEOTA; GENETICS; ISOLATION AND PURIFICATION; KINETICS; METABOLISM; MOLECULAR CLONING; MOLECULAR GENETICS; SEQUENCE ALIGNMENT;

AMINO ACID SEQUENCE; CLONING, MOLECULAR; EURYARCHAEOTA; FORMATE DEHYDROGENASES; GENES, BACTERIAL; KINETICS; MOLECULAR SEQUENCE DATA; NAD; SEQUENCE ALIGNMENT;

EID: 0041350368     PISSN: 09168451     EISSN: 13476947     Source Type: Journal    
DOI: 10.1271/bbb.67.720     Document Type: Article

References (33)

1. Crosby, J., Chirality in industry—an overview. In “Chirality in Industry”, eds. Collins, A. N., Sheldrake, G. N., and Crosby, J., John Wiley & Sons, Chichester, pp. 1-66 (1992).
2. Kula, M.-R., and Kragl, U., Dehydrogenases in the synthesis of chiral compounds. In “Stereoselective Biocatalysis”, ed. Patel, R. N., Marcel Dekker, New York, pp.839-866 (2000).
3. Yasohara, Y., Kizaki, N., Hasegawa, J., Wada, M., Kataoka, M., and Shimizu, S., Stereoselective reduction of alkyl 3-oxobutanoate by carbonyl reductase from Candida magnoliae. Tetrahedron: Asymmetry, 12, 1713-1718 (2001).
4. Wong, C.-H., and Whitesides, G. M., Enzyme-catalyzed organic synthesis: NAD(P)H cofactor regeneration by using glucose 6-phosphate and the glucose-6-phosphate dehydrogenase from Leuconostoc mesenteroides. J. Am. Chem. Soc., 103, 4890-4899 (1981).
5. Wong, C.-H., Drueckhammer, D. G., and Sweers, H. M., Enzymatic vs. fermentative synthesis: thermostable glucose dehydrogenase catalyzed regeneration of NAD(P)H for use in enzymatic synthesis. J. Am. Chem. Soc., 107, 4028-4031 (1985).
6. Wong, C.-H., and Whiteside, G. M., Enzyme-catalyzed organic synthesis: NAD(P)H cofactor regeneration using ethanol/alcohol dehydrogenase/aldehyde dehydrogenase and methanol /alcohol dehydrogenase /aldehyde dehydrogenase/formate dehydrogenase. J. Org. Chem., 47, 2816-2818 (1982).
7. +-dependent formate dehydrogenase. Biochem. J., 301, 625-643 (1994).
8. Ferry, J. G., Formate dehydrogenase. FEMS Microbiol. Rev., 87, 377-382 (1990).
9. Ohyama, T., and Yamazaki, I., Purification and some properties of formate dehydrogenase. J. Biochem., 75, 1257-1263 (1974).
10. Colas des Francs-Small, C., Ambard-Bretteville, F., Small, I. D., and Remy, R., Identification of a major soluble protein in mitochondria from nonphotosynthetic tissues as NAD-dependent formate dehydrogenase. Plant Physiol., 102, 1171-1177 (1993).
11. Kato, N., Kano, M., Tani, Y., and Ogata, K., Purification and characterization of formate dehydrogenase in a methanol-utilizing yeast, Kloeck-era sp. No. 2201. Agric. Biol. Chem., 38, 111-116 (1974).
12. Schutte, H., Flossdorf, J., Sahm, H., and Kula, M.-R., Purification and properties of formaldehyde dehydrogenase and formate dehydrogenase from Candida boidinii. Eur. J. Biochem., 62, 151-160 (1976).
13. Van Dijken, J. P., Oostra-Demkes, G. J., Otto, R., and Harder, W., S-formylglutathione: the substrate for formate dehydrogenase in methanol-utilizing yeast. Arch. Microbiol., 111, 77-83 (1976).
14. Izumi, Y., Kanzaki, H., Morita, S., Futazuka, H., and Yamada, H., Characterization of crystalline formate dehydrogenase from Candida methanolica. Eur. J. Biochem., 182, 333-341 (1989).
15. Avilova, T. V., Egorova, O. A., Ioanesyan, L. S., and Egorov, A. M., Biosynthesis, isolation and properties of NAD-dependent formate dehydrogenase from the yeast Candida methylica. Eur. J. Biochem., 152, 657-662 (1985).
16. Muller, U., Willnow, P., Rusching, U., and Hopner, T., Formate dehydrogenase from Pseudomonas oxalaticus. Eur. J. Biochem., 83, 485-498 (1978).
17. Egorov, A. M., Avilova, T. V., Dikov, M. M., Popov, V. O., Rodionov, Y. V., and Berezin, I. V., NAD-dependent formate dehydrogenase from methylotrophic bacterium, strain 1. Eur. J. Biochem., 99, 569-576 (1979).
18. Asano, Y., Sekigawa, T., Inukai, H., and Nakazawa, A., Purification and properties of formate dehydrogenase from Moraxella sp. strain C-1. J. Bacteriol., 170, 3189-3193 (1988).
19. Iida, M., Kitamura-Kimura, K., Maeda, H., and Mineki, S., Purification and characterization of a NAD +-dependent formate dehydrogenase produced by Paracoccus sp. Biosci. Biotechnol. Biochem., 56, 1966-1970 (1992).
20. Tishkov, V. I., Galkin, A. G., Marchenko, G. N., Tsygankov, Y. D., and Egorov, A. M., Formate dehydrogenase from methylotrophic bacterium Pseudomonas sp. 101: gene cloning and expression in Escherichia coli. Biotechnol. Appl. Biochem., 18, 201-207 (1993).
21. Shinoda, T., Satoh, T., Mineki, S., Iida, M., and Taguchi, H., Cloning, nucleotide sequencing, and expression in Escherichia coli of the gene for formate dehydrogenase of Paracoccus sp. 12-A, a formateassimilation bacterium. Biosci. Biotechnol. Biochem., 66, 271-276 (2002).
22. Galkin, A., Kulakova, L., Tishkov, V., Esaki, N., and Soda, K., Cloning of formate dehydrogenase gene from a methanol-utilizing bacterium Mycobacterium vaccae N10. Appl. Microbiol. Biotechnol., 44, 479-483 (1995).
23. Saleeba, J. A., Cobbett, C. S., and Hynes, M. J., Characterization of the amdA-regulated aciA gene of Aspergillus nidulans. Mol. Gen. Genet., 235, 349-358 (1992).
24. Sambrook, J., Fritsch, E. F., and Maniatis, T., Molecular Cloning, A laboratory manual, 2nd. ed., Cold Spring Harbor Laboratory, Cold Spring Harbor, New York (1989).
25. Lowry, O. H., Rosenbrough, N. J., Farr, A. L., and Randall, R. J., Protein measurement with the Folin phenol reagent. J. Biol. Chem., 193, 265-275 (1951).
26. Laemmli, U. K., Cleavage of structural proteins during the assembly of bacteriophage T4. Nature, 227, 680-685 (1970).
27. Triglia, T., Peterson, M. G., and Kemp, D. J., A procedure for in vitro amplification of DNA segments that lie outside the boundaries of known sequences. Nucleic Acids Res., 16, 8186 (1988).
28. Marmur, J., A procedure for the isolation of deoxyribonucleic acid from micro-organisms. J. Mol. Biol., 3, 208-218 (1961).
29. Nanba, H., Ikenaka, Y., Yamada, Y., Yajima, K., Takano, M., and Takahashi, S., Production of thermotolerant N-carbamyl-D-amino acid amidohydro-lase by recombinant Escherichia coli. J. Biosci. Bioeng., 87, 149-154 (1999).
30. Sanger, F., Nicklen, S., and Coulson, A. R., DNA sequencing with chain-terminating inhibitiors. Proc. Natl. Acad. Sci. USA, 74, 5463-5467 (1977).
31. Loginova, N. V., Namsaraev, B. B., and Trotsenko, Y. A., Autotrophic metabolism of methanol in Microcyclus aquaticus. Microbiologiya, 47, 168-170 (1978).
32. Urakami, T., and Komagata, K., Electrophoretic comparison of enzymes in the Gram negative methanol-utilizing bacteria. J. Gen. Appl. Microbiol., 27, 381-403 (1981).
33. Konopka, A., and Szentes, M., Autotrophic growth of gas vacuolated strain of Microcyclus aquaticus on methanol and hydrogen. Appl. Environ. Microbiol., 47, 870-872 (1984).