Methods for on-chip protein analysis

Analytical Biochemistry

Volumn 321, Issue 1, 2003, Pages 116-124

  Caputo, Emilia ^a   Moharram, Ramy ^a   Martin, Brian M ^a  

^a NATIONAL INSTITUTE OF MENTAL HEALTH   (United States)

Author keywords

C terminal sequencing; Carboxypeptidase Y; Enzymatic hydrolysis; ProteinChip array; Surface enhanced laser desorption ionization

Indexed keywords

DESORPTION; ENZYMATIC HYDROLYSIS; INDUCTIVELY COUPLED PLASMA; LADDERS; MASS SPECTROMETRY; PEPTIDES;

CARBOXYPEPTIDASE; LASER DESORPTION/IONIZATION; PEPTIDE MASS FINGERPRINT; PROTEINCHIP ARRAY; QUADRUPOLE-TIME OF FLIGHTS; SURFACE-ENHANCED LASER DESORPTION/IONIZATION; TANDEM MASS SPECTROMETRY; TERMINAL SEQUENCING;

C (PROGRAMMING LANGUAGE);

PEPTIDE DERIVATIVE; PROTEIN; PROTEINASE; PROTEOME; TRYPSIN;

ANALYTIC METHOD; ARTICLE; CARBOXY TERMINAL SEQUENCE; CHEMICAL PROCEDURES; DESORPTION; EXPERIMENTAL TEST; IONIZATION; MASS SPECTROMETER; MASS SPECTROMETRY; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROTEIN ANALYSIS; SURFACE ENHANCED LASER DESORPTION IONIZATION TIME OF FLIGHT MASS SPECTROMETRY; TANDEM MASS SPECTROMETRY;

EID: 0041328905     PISSN: 00032697     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0003-2697(03)00361-0     Document Type: Article

References (23)

1. Panisko E.A., Conrads T.P., Goshe M.B., Veenstra T.D. The postgenomic age: characterization of proteomes [Review]. Exp. Hematol. 30:2002;97-107.
2. Gorg A., Obermaier C., Boguth G., Harder A., Scheibe B., Wildgruber R., Weiss W. The current state of two-dimensional electrophoresis with immobilized pH gradients [Review]. Electrophoresis. 21:2000;1037-1053.
3. Voss T., Haberl P. Observations on the reproducibility and matching efficiency of two-dimensional electrophoresis gels: consequences for comprehensive data analysis. Electrophoresis. 21:2000;3345-3350.
4. Staudenmann W., Hatt P.D., Hoving S., Lehmann A., Kertesz M., James P. Sample handling for proteome analysis. Electrophoresis. 19:1998;901-908.
5. Khandurina J., Guttman A. Bioanalysis in microfluidic devices [Review]. J. Chromatogr. A. 943:2002;159-183.
6. Figeys D., Pinto D. Proteomics on a chip: promising developments [Review]. Electrophoresis. 22:2001;208-216.
7. Chakravarti D.N., Chakravarti B., Moutsatsos I. Informatic tools for proteome profiling [Review]. Biotechniques. 2002;4-15.
8. Merchant M., Weinberger S. Recent advancements in surface enhanced laser desorption/ionization time of flight mass spectrometry. Electrophoresis. 21:2000;1164-1167.
9. Weinberger S.R., Morris T.S., Pawlak M. Recent trends in protein biochip technology [Review]. Pharmacogenomics. 1:2000;395-416.
10. Issaq H.J., Veenstra T.D., Conrads T.P., Felschow D. The SELDI-TOF MS approach to proteomics: protein profiling and biomarker identification. Biochem. Biophys. Res. Commun. 292:2002;587-592.
11. Li X., Mohan S., Gu W., Miyakoshi N., Baylink D.J. Differential protein profile in the ear-punched tissue of regeneration and non-regeneration strains of mice: a novel approach to explore the candidate genes for soft-tissue regeneration. Biochim. Biophys. Acta. 1524:2000;102-109.
12. Hinshelwood J., Spencer D.I.R., Edwards Y.J.K., Perkins S.J. Identification of the C3b binding site in a recombinant vWF-A domain of complement factor B by surface enhanced laser desorption-ionization affinity mass spectrometry and homology modeling: implications for the activity of Factor B. J. Mol. Biol. 294:1999;587-599.
13. Mandrich L., Caputo E., Martin B.M., Rossi M., Manco G. The Aes protein and the monomeric α-galactosidase from Escherichia coli form a non-covalent complex. Implications for the regulation of carbohydrate metabolism. J. Biol. Chem. 277:2002;48241-48247.
14. Baldwin M.A., Medzihradszky K.F., Lock C.M., Fisher B., Settineri T.A., Burlingame A.L. Matrix-assisted laser desorption/ionization coupled with quadrupole/orthogonal acceleration time-of-flight mass spectrometry for protein discovery, identification, and structural analysis. Anal. Chem. 73:2001;1707-1720.
15. Casagranda F., Wilshire J.F. Enzymatic and chemical methods for manual C-terminal peptide sequencing. Methods Mol. Biol. 64:1997;243-257.
16. Bergman T. Ladder sequencing [Review]. EXS. 88:2000;133-144.
17. Caputo E., Carratore V., Ciullo M., Tiberio C., Mani J.C., Piater-Tonneau D., Guardiola J. Biosynthesis and immunobiochemical characterization of gp17/GCDFP-15. A glycoprotein from seminal vesicles and from breast tumors, in HeLa cells and in Pichia pastoris yeast. Eur. J. Biochem. 265:1999;664-670.
18. Thiede B., Salnikow J., Wittmann-Liebold B. C-terminal ladder sequencing by an approach combining chemical degradation with analysis by matrix-assisted-laser-desorption ionization mass spectrometry. Eur. J. Biochem. 244:1997;750-754.
19. Stark G.R. Sequential degradation of peptides and proteins from their COOH termini with ammonium thiocyanate and acetic anhydride. Methods Enzymol. 25:1972;369-384.
20. Pandey A., Mann M. Proteomic to study genes and genomes [Review]. Nature. 405:2000;837-845.
21. Martin B.M., Svendsen I., Ottesen M. Use of carboxypeptidase Y for carboxy-terminal sequence determination in proteins. Carlsberg Res. Commun. 42:1977;99-102.
22. Ambler R.P. Enzymatic hydrolysis with carboxypeptidases. Methods Enzymol. 25:1972;143-154.
23. Patterson D.H., Tarr G.E., Regnier F.E., Martin S.A. C-terminal ladder sequencing via matrix-assisted laser desorption mass spectrometry coupled with carboxypeptidase Y time-dependent and concentration-dependent digestions. Anal. Chem. 67:1995;3971-3978.