Web-based simulation for contrast transfer function and envelope functions

Microscopy and Microanalysis

Volumn 7, Issue 4, 2001, Pages 329-334

  Jiang, Wen ^a   Chiu, Wah ^a  

^a BAYLOR COLLEGE OF MEDICINE   (United States)

Author keywords

Contrast transfer function; Electron microscopy; Envelope function; Java applet; JavaScript; Simulation

Indexed keywords

EID: 0040436833     PISSN: 14319276     EISSN: None     Source Type: Journal    
DOI: 10.1017/S1431927601010315     Document Type: Article

References (14)

1. Chiu W (1978) Factors in high resolution biological structure analysis by conventional transmission electron microscopy. Scanning Electron Microsc 1:569-580
2. Erickson HP, Klug A (1970) The Fourier transform of an electron micrograph: effects of defocussing and aberrations, and implications for the use of underfocus contrast enhancement. Philos Trans R Soc London, Ser B 261:105-118
3. Frank J (1969) Nachweis von objektbewegungen im lichtoptischen diffraktogramm von elektronmikroskopischen aufnahmen. Optik (Stuttgart) 30:171-180
4. Frank J (1973) The envelope of electron microscopic transfer functions for partially coherent illumination. Optik (Stuttgart) 38:519-536
5. Hadida-Hassan M, Young SJ, Peltier ST, Wong M, Lamont S, Ellisman MH (1999) Web-based telemicroscopy. J Struct Biol 125: 235-245
6. Hanszen KJ (1971) The optical transfer theory of the electron microscope: fundamental principles and applications. In: Advances in Optical and Electron Microscopy, Vol 4, Barer R, Cosslett VE (eds). New York: Academic Press, pp 1-84
7. Hanszen KJ, Trepte L (1971) Die kontrastubertragung im Elecktonmikroskop bei partiell koharenter beleuchtung. Optik (Stuttgart) 33:166-182
8. Kisseberth N, Brauer G, Grosser B, Potter CS, Carragher B (1999) JavaScope: a Web-based TEM control interface. J Struct Biol 125: 229-234
9. Ludtke SJ, Baldwin PR, Chiu W (1999) EMAN: semi-automated software for high resolution single particle reconstructions. J Struct Biol 128:82-97
10. Press WH, Teukolsky SH, Vetterling WT, Flannery BP (1997) Numerical Recipes in C, 2nd ed. Cambridge, UK: Cambridge University Press
11. Saad A, Ludtke SJ, Jakana J, Rixon FJ, Tsuruta H, Chiu W (2001) Fourier amplitude decay of electron cryo-microscopic images of single particles and effects on structure determination. J Struct Biol 133; DOI: 10.1006/jsbi.2001.4330
12. Thon F (1971) Phase contrast electron microscopy. In: Electron Microscopy in Material Sciences, Valdre U (ed). New York: Academic Press, pp 571-625
13. Wade RH, Frank J (1977) Electron microscope transfer functions for partially coherent axial illumination and chromatic defocus spread. Optik (Stuttgart) 49:81-92
14. Zhou ZH, Hardt S, Wang B, Sherman MB, Jakana J, Chiu W (1996) CTF determination of images of ice-embedded single particles using a graphics interface. J Struct Biol 116:216-222