Genomic organization of lactic acid bacteria phages

Lait

Volumn 76, Issue 1-2, 1996, Pages 81-89

  Schouler, C ^a  

^a CEMAGREF   (France)

Author keywords

Bacteriophage; Genome organization; Lactic acid bacteria

Indexed keywords

EID: 0040157925     PISSN: 00237302     EISSN: None     Source Type: Journal    
DOI: 10.1051/lait:19961-28     Document Type: Article

References (61)

1. Alatossava T, Klaennammer TR (1991) Molecular characterization of three small isometric-headed bacteriophages which vary in their sensit vity to the lactococcal phage resistance plasmid pTR2030. Appl Environ Microbiol 57, 1346-1353
2. Arendt EK, Daly C, Fitzgerald GF, van de Guchte M (1994) Molecular characterization of lactococcal bacteriophage Tuc2009 and identification and analysis of genes encoding lysin, a putative holin and two structural proteins. Appl Environ Microbiol 60, 1875-1883
3. Belin D, Hedgpeth J, Selzer GB, Epstein RH (1979) Temperature-sensitive putation in the initiation codon of the rllB gene of bacteriophage T4. Proc Natl Acad Sci USA 76, 700-704
4. Beresford TPJ, Ward LJH, Jarvis AW (1993) Temporally regulated transcriptional expression of the genomes of lactococcal bacteriophages c2 and sk1. Appl Environ Microbiol 59, 3708-3712
5. Bidnenko E, Ehrlich D, Chopin M-C (1995) Phage operon involved in sensitivity to the Lactococcus lactis abortive mechanism AbiD1. J Bacteriol 177, 1824-1829
6. Birkeland N-K, Holo H (1993) Transduction of a plasmid carrying the cohesive end region from Lactococcus lactis bacteriophage ΦLC3. Appl Environ Microbiol 59, 1966-1968
7. Birkeland N-K (1994) Cloning, molecular characterization, and expression of the genes encoding the lytic functions of lactococcal bacteriophage ΦLC3: a dual lysis system of modular design. Can J Microbiol 40, 658-665
8. Campbell A (1994) Comparative molecular biology of lambdoid phages. Annu Rev Microbiol 48, 193-222
9. Casey CN, Morgan E, Daly C, Fitzgerald GF (1993) Characterization and classification of virulent lactococcal bacteriophages isolated from a Cheddar cheese plant. J Appl Bacteriol 74, 268-275
10. Chalut C, Egly JM (1995) AUC is used as a start codon in Escherichia coli. Gene 156, 43-45
11. Chandry PS, Moore SC, Davidson BE, Hillier AJ (1994a) Analysis of the cos region of the Lactococcus lactis bacteriophage sk1. Gene 138, 123-128
12. Chandry PS, Davidson BE, Hillier AJ (1994b) Temporal transcription map of the Lactococcus lactis bacteriophage sk1. Microbiology 140, 2251-2261
13. Chopin A, Chopin M-C, Moillo-Batt A, Langella P (1984) Two plasmid-determined restriction and modification systems in Streptococcus lactis. Plasmid 11, 260-263
14. Christiansen B, Johnsen MG, Stenby E, Vogensen FK, Hammer K (1994) Characterization of the lactococcal temperate phage TP901-1 and its site specific integration. J Bacteriol 176, 1069-1076
15. Chung DK, Kim JH, Batt CA (1991) Cloning and nucleotide sequence of the major capsid protein from Lactococcus lactis ssp cremoris bacteriophage F4-1. Gene 101, 121-125
16. Chung DK, Chung SK, Batt CA (1992) Antisense RNA directed against the major capsid protein of Lactococcus lactis subsp cremoris bacteriophage 4-1 confers partial resistance to the host. Appl Microbiol Biotechnol 37, 79-83
17. Derbyshire V, Parker MM, Belfort M (1995) Homing sweet homing: mobile introns in bacterial viruses. Semin Virol 6, 65-73
18. Dupont L, Boizet-Bonhoure B, Coddeville M, Auvray F, Ritzenthaler P (1995) Characterization of genetic elements required for site-specific integration of Lactobacillus delbrueckii subsp bulgaricus bacteriophage mv4 and construction of an integration-proficient vector for Lactobacillus plantarum. J Bacteriol 177, 586-595
19. Dunn JJ, Studier FW (1983) Complete nucleotide sequence of bacteriophage T7 DNA and the locations of T7 genetic elements. J Mol Biol 166, 477-535
20. Ermel G, Cavalier A, Thomas D, Le Pennec JP (1994) Genetic studies of lactococcal bacteriophages -taxonomic differentiations and DNA analysis: evidence for 3' cohesive ends. J Appl Bacteriol 76, 431-441
21. Forsman P, Alatossava T (1991) Genetic variation of Lactobacillus delbrueckii subsp lactis bacteriophages isolated from cheese processing plants in Finland. Appl Environ Microbiol 57, 1805-1812
22. Forsman P, Alatossava T (1994) Repeated sequences and the sites of genome rearrangements in bacteriophages of Lactobacillus delbrueckii subsp lactis. Arch Virol 137, 43-54
23. Fremaux C, De Antoni GL, Raya RR, Klaenhammer TR (1993) Genetic organization and sequence of the region encoding integrative functions from Lactobacillus gasseri temperate bacteriophage Φadh. Gene 126, 61-66
24. Henrich B, Binishofer B, Bläsi U (1995) Primary structure and functional analysis of the lysis genes of Lactobacillus gasseri bacteriophage Φadh. J Bacteriol 177, 723-732
25. Hertwig S (1990) Genetische und biochemische Charakterisierung ienes bakteriophagencodierten Lysins von Lactococcus lactis. PhD Thesis. University of Kiel, Kiel, Germany
26. Hill C, Miller LA, Klaenhammer TR (1990) Cloning, expression and sequence determination of a bacteriophage fragment encoding bacteriophage resistance in Lactococcus lactis. J Bacteriol 172, 6419-6426
27. Hill C, Miller LA, Klaenhammer TR (1991) In vivo genetic exchange of a functional domain from a type II methylase between lactococcal plasmid pTR2030 and a virulent bacteriophage. J Bacteriol 173, 4363-4370
28. Huggins AR, Sandine WE (1977) Incidence and properties of temperate bacteriophages induced from lactic streptococci. Appl Environ Microbiol 33, 184-191
29. Jarvis AW (1977) The serological differentiation of lactic streptococcal bacteriophages. NZ J Dairy Sci Technol 12, 176-181
30. Jarvis AW (1989) Bacteriophages of lactic acid bacteria. J Dairy Sci 72, 3406-3428
31. Jarvis AW, Fitzgerald GF, Mata M, Mercenier A, Neve H, Powell IB, Ronda C, Saxelin M, Teuber M (1991) Species and type phages of lactococcal bacteriophages. Intervirology 32, 2-9
32. Kim SG, Batt CA (1991 a) Identification of a conserved nucleotide sequence in Lactococcus lactis subsp lactis bacteriophages. Gene 98, 95-100
33. Kim SG, Batt CA (1991b) Nucleotide sequence and deletion analysis of a gene coding for a structural protein of Lactococcus lactis bacteriophage F4-1. Food Microbiol 8, 27-36
34. Kim SG, Batt CA (1991c) Antisense mRNA-mediated bacteriophage resistance in Lactococcus lactis subsp lactis. Appl Environ Microbiol 57, 1109-1113
35. Lahbib-Mansais Y, Mata M, Ritzenthaler P (1988) Molecular taxonomy of Lactobacillus phages. Biochimie 70, 429-435
36. Lahbib-Mansais Y, Boizet B, Dupont L, Mata M, Ritzenthaler P (1992) Characterization of a temperate bacteriophage of Lactobacillus delbrueckii subsp bulgaricus and its interactions with the host cell chromosome. J Gen Microbiol 138, 1139-1146
37. Lawrence RC (1978) Action of bacteriophage of lactic acid bacteria, consequences and protection. N Z J Dairy Sci Technol 13, 129-136
38. Lembke J, Krusch U, Lompe A, Teuber M (1980) Isolation and ultrastructure of bacteriophages of group N (lactic) streptococci. Zentralbl Bakteriol Abt Orig 1C, 79-91
39. Lillehaug D, Birkeland N-K (1993) Characterization of genetic elements required for site-specific integration of the temperate lactococcal bacteriophage ΦLC3 and construction of integration-negative ΦLC3 mutants. J Bacteriol 175, 1745-1755
40. Lillehaug D, Lindqvist BH, Birkeland N-K (1991) Characterization of ΦLC3, a Lactococcus lactis subsp cremoris temperate bacteriophage with cohesive single-stranded DNA ends. Appl Environ Microbiol 57, 3206-3211
41. Mata M, Trautwetter A, Luthaud G, Ritzenthaler P (1986) Thirteen virulent and temperate bacteriophages of Lactobacillus bulgaricus and Lactobacillus lactis belong to a single DNA homology group. Appl Environ Microbiol 52, 812-818
42. Mikkonen M, Alatossava T (1994) Characterization of the genome region encoding structural proteins of Lactobacillus delbrueckii subsp lactis bacteriophage LL-H. Gene 51, 53-59
43. Mikkonen M, Alatossava T (1995) A group I intron in the terminase gene of Lactobacillus delbrueckii subsp lactis bacteriophage LL-H. Microbiology 141, 2183-2190
44. Moineau S, Pandian S, Klaenhammer (1994) Evolution of a lytic bacteriophage via DNA acquisition from the Lactococcus chromosome. Appl Environ Microbiol 60, 1832-1841
45. Nakashima Y, Ikeda H, Kakita Y, Miake F, Watanabe K (1994) Restriction map of the genomic DNA of Lactobacillus casei bacteriophage PL-1 and nucleotide sequence of its cohesive single-stranded ends. J Gen Virol 75, 2537-2541
46. Nauta A, van Sinderen D, Karsens H, Srnit E, Venema G, Kok J (1995) Inducible gene expression mediated by a represser-operator system isolated from Lactococcus lactis bacteriophage r1t. Mol Microbiol, in press
47. Platteeuw C, de Vos; WM (1992) Location, characterization and expression of lytic-encoding gene, lytA, of Lactococcus lactis bacteriopahge ΦUS3. Gene 118, 115-120
48. Prevots F, Mata M, Ritzenthaler P (1990) Taxonomic differentiation of 101 lactococcal bacteriophages and characterization of bacteriophages with unusually large genomes. Appl Environ Microbiol 56, 2180-2185
49. Raya RR, Fremaux C, De Antoni GL, Klaenhammer TR (1992) Site-specific integration of the temperate bacteriophage Φadh into the Lactobacillus gasseri chromosome and molecular characterization of the phage (attP) and bacterial (attB) attachment sites. J Bacteriol 174, 5584-5592
50. Schouler C, Ehrlich SD, Chopin M-C (1994) Sequence and organization of the lactococcal prolate-headed blL67 phage genome. Microbiology 140, 3061-3069
51. Sechaud L, Cluzel PJ, Rousseau M, Baumgartner A, Accolas JP (1988) Bacteriophages of lactobacilli. Biochimie 70, 401-410
52. Shearman C, Underwood H, Jury K, Gasson M (1989) Cloning and DNA sequence analysis of a Lactococcus bacteriophage lysin gene. Mol Gen Genet 218, 214-221
53. Shearman CA, Jury KL, Gasson MJ (1994) Controlled expression and structural organization of a Lactococcus lactis bacteriophage lysin encoded by two overlapping genes. Appl Environ Microbiol 60, 3063-3073
54. Shimizu-Kadota M, Kiwaki M, Hirokawa H, Tsuchida N (1985) ISL1 : a new transposable element in Lactobacillus casei. Mol Gen Genet 200, 214-221
55. Trautwetter A, Ritzenthaler P, Alatossova T, Mata-Gilsinger M (1986) Physical and genetic characterization of the genome of the Lactobacillus lactis bacteriophage LL-H. J Virol 59, 551-555
56. Van de Guchte M, Daly C, Fitzgerald GF, Arendt EK (1994a) Identification of int and attP on the genome of lactococcal bacteriophage Tuc2009 and their use for site-specific plasmid integration in the chromosome of Tuc2009-resistant Lactococcus lactis MG1363. Appl Environ Microbiol 60, 2324-2329
57. Van de Guchte M, Daly C, Fitzgerald GF, Arendt EK (1994b) Identification of the putative repressor-encoding gene cl of the temperate lactococcal bacteriophage Tuc2009. Gene 144, 93-95
58. Van Sinderen D, Karsens H, Kok J, Terpstra P, Ruiters MHJ, Venema G, Nauta A (1995) Sequence analysis and molecular characterization of the lactococcal bacteriophage r1t. Mol Microbiol, in press
59. Vasala A, Dupont L, Baumann M, Ritzenthaler P, Alatossava T (1993) Molecular comparison of the structural proteins encoding gene clusters of two related Lactobacillus delbrueckii bacteriophages. J Virol 67, 3061-3068
60. Ward LJH, Beresford TPJ, Lubbers MW, Jarvis BDW, Jarvis AW (1993) Sequence analysis of the lysin gene region of the prolate lactococcal bacteriophage c2. Can J Microbiol 39, 767-774
61. Young R (1992) Bacteriophage lysis: mechanism and regulation. Microbiol Rev 56, 430-481