Systematic positions of Japanese firs in genus Abies (Pinaceae) revealed using DNA sequencing of chloroplast spacer regions and random amplified polymorphic DNAs (RAPDs) of nuclear DNA

Nihon Ringakkai Shi/Journal of the Japanese Forestry Society

Volumn 82, Issue 4, 2000, Pages 333-341

  Isoda, K ^a   Shiraishi, S ^a   Kisanuki, H ^a  

^a NONE

Author keywords

Abies; Chloroplast DNA; Molecular phylogeny; Nuclear DNA

Indexed keywords

EID: 0039301751     PISSN: 0021485X     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (32)

1. Abo-elwafa, A., Murai, K., and Shimada, T. (1995) Intra-and inter-specific variations in lens revealed by RAPD markers. Theor. Appl. Genet. 90: 335-340.
2. Bucci, G. and Menozzi, P. (1995) Genetic variation of RAPD markers in a Picea abies Karst. population. Heredity 75: 188-197.
3. Farjon, A. (1990) Pinaceae, drawings and description of the genera. 330 pp, Koeltz Scientific Books, Koningstein.
4. Farjon, A. and Rushforth, K. D. (1989) A classification of Abies Miller (Pinaceae). Notes RBG Edinb. 46: 59-79.
5. Federici, C. T., Fang, D. Q., Scora, R. W., and Roose, M. L. (1998) Phylogenetic relationships within the genus Citrus (Rutaceae) and related genera as revealed by RFLP and RAPD analysis. Theor. Appl. Genet. 96: 812-822.
6. Felsenstein, J. (1996) PHYLIP, ver. 3.572. Univ. of Washington, Seattle.
7. Furman, B. J., Grattapaglia, D., Dvorak, W. S., and O'malley, D. M. (1997) Analysis of genetic relationships of Central American and Mexican pines using RAPD markers that distinguish species. Mol. Ecol. 6: 321-331.
8. Gielly, L. and Taberlet, P. (1994) The use of chloroplast DNA to resolve plant phylogenies: noncoding versus rbcL sequences. Mol. Biol. Evol. 11: 769-777.
9. Higgins, D. G. and Sharp, P. M. (1989) Fast and sensitive multiple sequence alignments on a microcomputer. CABIOS 5: 151-153.
10. Isoda, K. and Shiraishi, S. (1999) Identification of chloroplast DNA haplotypes of Abies firma and A. homolepis using a polymerase chain reaction with species-specific primers. J. For. Res. 4: 291-294.
11. Kim, K. J. and Jansen, R. K. (1995) NdhF sequence evolution and the major clades in the sunflower family. Proc. Natl. Acad. Sci. USA 92: 10379-10383.
12. Kimura, M. (1980) A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J. Mol. Evol. 16: 111-120.
13. Landry, P. (1984) Synopsis du genre Abies. Bull. Soc. Bot. Fr. 131, Lett. Bot. 3: 223-229.
14. Liang, H. and Hilu, K. W. (1996) Application of the matK. gene sequences to grass systematics. Can. J. Bot. 74: 125-134.
15. Liu, T. S. (1971) A monograph of the genus Abies. Department of Forestry, College of Agriculture, National Taiwan University, Taipei.
16. Manen, J. F. and Natali, A. (1995) Comparison of the evolution of ribulose-1,5-bisphosphate carboxylase (rbcL) and atpB-rbcL noncoding spacer sequences in a recent plant group, the tribe Rubieae. J. Mol. Evol. 41: 920-927.
17. Murray, M. G. and Thompson, W. F. (1980) Rapid isolation of high molecular weight plant DNA. Nucleic Acids Res. 8: 4321-4325.
18. Shen, Y., Ford-Lloyd, B. V., and Newbury, H. J. (1998) Genetic relationships within the genus Beta determined using both PCR-based marker and DNA sequencing techniques. Heredity 80: 624-632.
19. Sokal, P. R. and Michener, C. D. (1958) A statistical method for evaluating systematic relationships. Univ. Kansas Sci. Bull. 38: 1409-1438.
20. Soltis, D. E., Kuzoff, R. K., Conti, E., Gornall, R., and Ferguson, K. (1996) matK and rbcL gene sequence data indicate that Saxifraga (Saxifragaceae) is polyphyletic. Am. J. Bot. 83: 371-382.
21. Taberlet, P., Gielly, L., Pautou, G., and Bouvet, J. (1991) Universal primers for amplification of three non-coding regions of chloroplast DNA. Plant Mol. Biol. 17: 1105-1109.
22. Tsumura, Y. and Suyama, Y. (1998) Differentiation of mitochondrial DNA polymorphisms in populations of five Japanese Abies species. Evolution 52: 1031-1042.
23. Tsumura, Y., Yoshimura, K., Tomaru, N., and Ohba, K. (1995) Molecular phylogeny of conifers using RFLP analysis of PCR-amplified specific chloroplast genes. Theor. Appl. Genet. 91: 1222-1236.
24. Virk, P. S., Ford-Lloyd, B. V., Jackson, M. T., and Newbury, H. J. (1995) Use of RAPD for the study of diversity within plant germplasm collections. Heredity 74: 170-179.
25. Williams, J. G. K., Kubelik, A. R., Livak, K. J., Rafalski, J. A., and Tingey, S. V. (1990) DNA polymorphisms amplified by arbitrary primers are useful as genetic markers. Nucleic Acids Res. 18: 6531-6535.
26. Wolfe, K. H., Li, W.-H., and Sharp, P. M. (1987) Rates of nucleotide substitution vary greatly among plant mitochondrial, chloroplast, and nuclear DNAs. Proc. Natl. Acad. Sci. USA 84: 9054-9058.