Systematic status of the Glycine tomentella and G. tabacina species complexes (Fabaceae) based on ITS sequences of nuclear ribosomal DNA

Journal of Plant Research

Volumn 114, Issue 4, 2001, Pages 435-442

  Hsing, Yue le C ^a   Hsieh, Jaw Shu ^b   Peng, Ching I ^a   Chou, Chang Hung ^a   Chiang, Tzen Yuh ^c  

^a INSTITUTE OF PLANT AND MICROBIAL BIOLOGY   (Taiwan)

^b NATIONAL TAIWAN UNIVERSITY   (Taiwan)

^c NATIONAL CHENG KUNG UNIVERSITY   (Taiwan)

Author keywords

Glycine; Glycine tabacina; Glycine tomentella; nrDNA ITS; Phylogeny; Polyploidization

Indexed keywords

EID: 0039301740     PISSN: 09189440     EISSN: None     Source Type: Journal    
DOI: 10.1007/pl00014009     Document Type: Article

References (71)

1. Archie, J.W. 1989. Homoplasy excess ratios: new indices for measuring levels of homoplasy in phylogenetic systematics and a critique of the consistency index. Syst. Zool. 38: 253-269.
2. Arnheim, N. 1983. Concerted evolution of multigene families. In M. Nei and R.K. Koehn, eds., Evolution of Genes and Proteins. Sinauer, Sunderland. pp. 38-61
3. Baldwin, B.G., Sanderson, M.J., Porter, J.M., Wojciechowski, M.F., Campbell, C.S. and Donoghue, M.J. 1995. The ITS region of nuclear ribosomal DNA: a valuable source of evidence on angiosperm phylogeny. Ann. Missouri Bot. Gard. 82: 247-277.
4. Broue, P., Marshall, D.R. and Muller, W.J. 1977. Biosystematics of subgenus Glycine (Verdc.): isoenzymatic data. Austral. J. Bot. 25: 555-566.
5. Chiang, T.Y. and Schaal, B.A. 2000. The internal transcribed spacer 2 region of the nuclear ribosomal DNA and the phylogeny of the moss family Hylocomiaceae. Plant Syst. Evol. 224: 127-137.
6. Chiang, T.Y., Hong, K.H. and Peng C.I 2001. Experimental hybridization reveals biased inheritance of the internal transcribed spacer of the nuclear ribosomal DNA in Begonia × taipeiensis. J. Plant Res. 114: 343-351.
7. Chuang, C.C. and Huang, C. 1966. The Leguminosae of Taiwan for pasture and soil improvement. Animal Industry Series No. 7, Department of Botany, National Taiwan University, Taipei, Taiwan.
8. Cracraft, J. 1983. Species concepts and speciation analysis. Curr. Ornithol. 1: 159-187.
9. Cronn, R.C., Zhao, X., Paterson, A.M. and Wendel, J.F. 1996. Polymorphism and concerted evolution in a tandemly repeated gene family. 5S ribosomal DNA in diploid and allopolyploid cottons. J. Molec. Evol. 42: 685-705.
10. Doyle, J.J. and Beachy, R.N. 1985. Ribosomal gene variation in soybean (Glycine) and its relatives. Theoret. Appl. Genet. 70: 369-376.
11. Doyle, J.J. and Brown, A.H.D. 1989. 5S nuclear ribosomal gene variation in the Glycine tomentella polyploid complex (Leguminosae). Syst. Bot. 14: 398-407.
12. Doyle, J.J. and Doyle, J.L. 1987. A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochem. Bull. 19: 11-15.
13. Doyle J.J. and Davis J.I. 1998. Homology in molecular phylogenetics: a parsimony perspective. In D.E. Soltis, P.S. Soltis, and J.J. Doyle, eds., Molecular Systematics of Plants II: DNA Sequences. Kluwer Academic Publishers, Boston, pp. 101-131.
14. Doyle, J.J., Doyle, J.L. and Brown, A.H.D. 1990a. A chloroplast-DNA phylogeny of the wild perennial relatives of soybean (Glycine subgenus Glycine): congruence with morphological and crossing groups. Evolution 44: 371-389.
15. Doyle, J.J., Doyle, J.L., Brown, A.H.D. and Grace, J.P. 1990b. Multiple origins of polyploids in the Glycine tabacina complex inferred from chloroplast DNA polymorphism. Proc. Natl. Acad. Sci. U.S.A. 87: 714-717.
16. Doyle, J.J., Doyle, J.L., Grace, J.P. and Brown, A.D.H. 1990c. Reproductively isolated polyploid races of Glycine tabacina (Leguminosae) had different chloroplast genome donors. Syst. Bot. 15: 173-181.
17. Felsenstein, J. 1985. Confidence limits on phylogenies, an approach using the bootstrap. Evolution 39: 783-791.
18. Ferguson, C.J., Levin, D.A. and Jansen, R.K. 1999. Natural hybridization between an outcrossing and a selfing Phlox (Polemoniaceae): the maternal species of F1 hybrids. Plant Syst. Evol. 218: 153-158.
19. Fuertes Aguilar. J., Rossello, J.A. and Feliner, G.N. 1999. Nuclear ribosomal DNA (nrDNA) concerted evolution in natural and artificial hybrids of Armeria (Plumbaginaceae). Molec. Ecol. 8: 1341-1346.
20. Grant, J.E., Brown, A.D.H. and Grace, J.P. 1984. Cytological and isozyme diversity in Glycine tomentella Hayata (Leguminosae). Austral. J. Bot. 32: 665-677.
21. Gu, J., Hui, D.W., Zhuang, B.C., Song, W.Y., Xu, B. and Chen, S.Y. 1994. Studies on rDNA ITS1 regions of soybean and its wild relatives. Acta Bot. Sin. 36: 759-764.
22. Hedges, S.B. 1992. The number of replications needed for accurate estimation of the bootstrap P value in phylogenetic studies. Molec. Biol. Evol. 9: 366-369.
23. Higgins, D.G., Bleasby, A.J. and Fuchs, R. 1992. CLUSTAL V. improved software for multiple sequence alignment. Comp. Appl. Biosci. 8: 189-191.
24. Hillis, D.M. 1994. Homology in molecular biology. In B.K. Hall, ed., Homology: the hierarchical basis of comparative biology. Academic Press, San Diego, pp. 339-369.
25. Hillis, D.M. and Bull, J.J. 1993. An empirical test of bootstrapping as a method for assessing confidence in phylogenetic analysis. Syst. Biol. 42: 182-192.
26. Hillis, D.M. and Huelsenbeck, J.P. 1992. Signal, noise, and reliability in molecular phylogenetic analyses. J. Hered. 83: 189-195.
27. Hsieh, J.S., Hsieh, K.L., Tsai, Y.C. and Hsing, Y.I. 2001. Each species of Glycine collected in Taiwan has a unique seed protein pattern. Euphytica 118: 67-73.
28. Hsing, Y.I.C., Hsieh, K.L., Huang, Y.C. and Hsieh, J.S. 1995 The relationships of cultivated soybeans and their wild relatives collected from Taiwan revealed by seed proteins. Bot. Bull. Acad. Sin. 36: 65-72.
29. Huang, T.C. and Ohashi, H. 1977. Glycine. In H.L. Li, ed., Flora of Taiwan, 1st edn. Vol. 3. Epoch Publishing Co.: Taipei, pp. 293-298.
30. Huelsenbeck, J.P. 1991. Tree-length distribution skewness, an indicator of phylogenetic information. Syst. Zool. 40: 257-270.
31. Hymowitz, T. and Newell, C.A. 1978. Taxonomy, speciation, domestication, dissemination, germplasm resources and variation in genus Glycine. In R.J. Summerfield and A.H. Bunting, eds., Advances in Legume Science. Royal Botanical Gardens, Kew, pp. 251-264.
32. Hymowitz, T. and Singh, R.J. 1987. Taxonomy and speciation. In J.R. Wilcox, ed., Soybeans: Improvement, Production, and Uses-Revision. American Society of Agronomy, Madison, pp. 23-48.
33. Hymowitz, T., Singh, R.J. and Larkin, B.P. 1990. Long-distance dispersal. the case for the allopolyploid Glycine tabacina (Labill.) Benth. and G. tomentella Hayata in the West-Central Pacific. Micronesica 23: 5-13.
34. Klaseen, G.J., Mooi, R.D. and Locke, A. 1991. Consistency indices and random data. Syst. Zool. 40: 446-457.
35. Kluge, A.G. and Farris, J.S. 1969. Quantitative phyletics and the evolution of anurans. Syst. Zool. 18: 1-32.
36. Kollipara, K.P., Singh, R.J. and Hymowitz, T. 1994. Genomic diversity and multiple origins of tetraploid (2n = 78, 80) Glycine tomentella Hayata. Genome 37: 448-459.
37. Kollipara, K.P., Singh, R.J. and Hymowitz, T. 1995. Genomic relationships in the genus Glycine (Fabaceae. Phaseoleae). use of a monoclonal antibody to the soybean Bowman-Birk inhibitor as a genome marker. Amer. J. Bot. 82: 1104-1111.
38. Kollipara, K.P., Singh, R.J. and Hymowitz, T. 1997. Phylogenetic and genomic relationships in the genus Glycine Willd. based on sequences from the ITS region of nuclear rDNA. Genome 40: 57-68.
39. Li, W.H. 1997. Molecular Evolution. Sinauer Publishers, Sunderland.
40. Liu, S.L. 1999. Multiple origin of Begonia formosana based on nucleotide variation of chloroplast DNA atpB-rbcL spacer and nrDNA ITS. Master thesis, National Cheng-Kung University, Tainan, Taiwan.
41. Menancio, D.I., Hepburn, A.G. and Hymowitz, T. 1990. Restriction fragment length polymorphism (RFLP) of wild perennial relatives of soybean. Theoret. Appl. Genet. 79: 235-240.
42. Newell, C.A. 1981. Distribution of Glycine tabacina (Labill.) Benth. in the West-Central Pacific. Micronesica 17: 59-65.
43. Newell, C.A. and Hymowitz, T. 1978. A reappraisal of the subgenus Glycine. Amer. J. Bot. 65: 168-179
44. Newell, C.A. and Hymowitz, T. 1980. A taxonomic revision in the genus Glycine subgenus Glycine Willd. (Leguminosae). Brittonia 32: 63-69.
45. Newell, C.A. and Hymowitz, T. 1983. Hybridization in the genus Glycine subgenus Glycine Willd. (Leguminosae, Papilionoideae). Amer. J. Bot. 70: 334-348.
46. Ohashi, H., Tateishi, Y., Nemoto, T. and Hoshi, H. 1991. Taxonomic studies on the Leguminosae of Taiwan IV. Sci. Rep. Tohoku Imp. Univ., Ser. 4, Biol. 40: 1-37.
47. O'Kane, Jr. S.L., Schaal, B.A. and Al-Shehbaz, I.A. 1996. The origin of Arabidopsis suecica (Brassicaceae) as indicated by nuclear rDNA sequences. Syst. Bot. 21: 559-566.
48. Palmer, J.D. 1987. Chloroplast DNA evolution and biosystematic uses of chloroplast DNA variation. Amer. Naturalist 130: S6-S29
49. Patterson, C. 1982. Morphological characters and homology. In K.A. Joysey and A.E. Fridays, eds., Problems of Phylogenetic Reconstruction. Academic Press, New York, pp. 21-74.
50. Roelofs, D., van Velzen, J., Kuperus, P. and Bachmann, K. 1997. Molecular evidence for an extinct parent of tetraploid species Microseris acuminata and M. campestris (Asteraceae, Lactuceae). Molec. Ecol. 6: 641-649.
51. Rogers, S.O. and Bendich, A.J. 1987. Ribosomal RNA genes in plants: variability in copy number and in the intergenic spacer. Plant Molec. Biol. 9: 509-520.
52. Saghai-Maroof, M.A., Soliman, K.M., Jorgensen, R.A. and Allard, R.W. 1984. Ribosomal DNA spacer-length polymorphisms in barley: Mendelian inheritance, chromosomal location, and population dynamics. Proc. Natl. Acad. Sci. U.S.A. 81: 8014-8018.
53. Singh, R.J. and Hymowitz, T. 1985a. Intra- and interspecific hybridization in the genus Glycine, subgenus Glycine Willd. Chromosome pairing and genome relationships. Zeit. Pflanzenz. 95, 289-310.
54. Singh, R.J. and Hymowitz, T. 1985b. The genomic relationships among six wild perennial species of the genus Glycine subgenus Glycine Willd. Theoret. Appl. Genet. 71: 221-230.
55. Singh, R.J., Kollipara, K.P. and Hymowitz, T. 1987. Intersubgeneric hybridization of soybeans with a wild perennial species, Glycine clandestina Wendl. Theoret. Appl. Genet. 74: 391-396.
56. Singh, R.J., Kollipara, K.P. and Hymowitz, T. 1988. Further data on the genomic relationships among wild perennial species (2n=40) of the genus Glycine Willd. Genome 302: 166-176
57. Singh, R.J., Kollipara, K.P. and Hymowitz, T. 1992. Genomic relationships among diploid wild perennial species of the genus Glycine Willd. subgenus Glycine revealed by crossability, meiotic chromosome pairing and seed protein electrophoresis. Theoret. Appl. Genet. 85: 276-282.
58. Singh, R.J., Kollipara, K.P. and Hymowitz, T. 1998. The genomes of Glycine canescens F.J. Herm. and G. tomentella Hayata of western Australia and their phylogenetic relationships in the genus Glycine Willd. Genome 41: 669-679.
59. Swofford, D.L. 1991. When are phylogeny estimates from molecular and morphological data incongruent? In M. Miyamoto and J. Cracraft, eds., Phylogenetic Analysis of DNA Sequences. Oxford University Press, New York, pp. 295-333.
60. Swofford, D.L. 1993. PAUP. Phylogenetic Analysis Using Parsimony, Version 3.1.1. Computer program distributed by the Illinois Natural History Survey. Champaign, IL.
61. Tateishi, Y. and Ohashi, H. 1992. Taxonomic studies on Glycine of Taiwan. J. Jap. Bot. 67: 127-147.
62. Tang, W.T. and Lin, C.C. 1962. Characterization of wild soybeans in Taiwan. Sci. Agric. 10: 75-78 (In Chinese).
63. Tindale, M.D. 1986a. A new north Queensland species of Glycine Willd. (Fabaceae). Brunonia 9: 99-103.
64. Tindale, M.D. 1986b. Taxonomic notes on three Australian and Norfolk Island species of Glycine Willd. (Fabaceae: Phaseolae) including the choice of a neotype for G. clandestine Wendl. Brunonia 9: 179-191.
65. Tindale, M.D. 1987. Two new eastern Australia species of Glycine Willd. (Fabaceae). Brunonia 7: 207-213.
66. Tindale, M.D. and Craven, L.A. 1988. Three new species of Glycine (Fabaceae, Phaseolae) from Northwestern Australia with notes on amphicarpy in the genus. Austral. Syst. Bot. 1: 399-410.
67. Tindale, M.D. and Craven, L.A. 1993. Glycine pindanica (Fabaceae, Phaseolae), a new species from West Kimberley, Western Australia. Austral. Syst. Bot. 6: 371-376.
68. Wendel, J.F., Schnabel, A. and Seelanan, T. 1995. An unusual ribosomal DNA sequence from Gossypium gossypioides reveals ancient, cryptic, intergenomic introgression. Molec. Phylogenet. Evol. 4: 298-313.
69. Wojciechowski, M.F., Sanderson, M.J., Baldwin, B.G. and Donoghue, M.J. 1993. Monophyly of aneuploid Astragalus (Fabaceae). evidence from nuclear ribosomal DNA internal transcribed spacer sequences. Amer. J. Bot. 80: 711-722.
70. Yeh, M.S. and Cheng, S.H. 1991. Colored Illustration of Leguminous Plant Resources in Taiwan. Council of Agriculture, Taipei.
71. Zhu, T., Shi, L., Doyle, J.J. and Keim, P. 1995. A single nuclear locus phylogeny of soybean based on DNA sequence. Theoret. Appl. Genet. 90: 991-999.