메뉴 건너뛰기




Volumn 12, Issue 4, 2003, Pages 903-915

A test for deviation from island-model population structure

Author keywords

Coenonympha; FST; Gene flow; Lewontin Krakauer test; Neutrality; Parametric bootstrap; Population structure; Selection

Indexed keywords

ANIMALS; BUTTERFLIES; COMPUTER SIMULATION; EVOLUTION; GEOGRAPHY; MODELS, GENETIC; POPULATION DYNAMICS; SELECTION (GENETICS);

EID: 0038814867     PISSN: 09621083     EISSN: None     Source Type: Journal    
DOI: 10.1046/j.1365-294X.2003.01783.x     Document Type: Article
Times cited : (14)

References (67)
  • 2
    • 0032587305 scopus 로고    scopus 로고
    • ST: Fish, allozymes and the Lewontin-Krakauer test revisited
    • ST: fish, allozymes and the Lewontin-Krakauer test revisited. Genetics, 152, 653-659.
    • (1999) Genetics , vol.152 , pp. 653-659
    • Baer, C.F.1
  • 6
    • 0035836728 scopus 로고    scopus 로고
    • Maximum likelihood estimation of a migration matrix and effective population sizes in n sub-populations by using a coalescent approach
    • Beerli P, Felsenstein J (2001) Maximum likelihood estimation of a migration matrix and effective population sizes in n sub-populations by using a coalescent approach. Proceedings of the National Academy of Sciences USA, 98, 4563-4568.
    • (2001) Proceedings of the National Academy of Sciences USA , vol.98 , pp. 4563-4568
    • Beerli, P.1    Felsenstein, J.2
  • 7
    • 38249004106 scopus 로고
    • Ecogeographical distribution and thermostability of isocitrate dehydrogenase (Idh) allozymes in European silver fir (Abies alba)
    • Bergmann F, Gregorius HR (1993) Ecogeographical distribution and thermostability of isocitrate dehydrogenase (Idh) allozymes in European silver fir (Abies alba). Biochemical Systematics and Ecology, 21, 597-605.
    • (1993) Biochemical Systematics and Ecology , vol.21 , pp. 597-605
    • Bergmann, F.1    Gregorius, H.R.2
  • 9
    • 0034080157 scopus 로고    scopus 로고
    • Quasi-equilibrium theory for the distribution of rare alleles in a subdivided population: Justification and implications
    • Burr TL (2000) Quasi-equilibrium theory for the distribution of rare alleles in a subdivided population: justification and implications. Theoretical Population Biology, 57, 297-306.
    • (2000) Theoretical Population Biology , vol.57 , pp. 297-306
    • Burr, T.L.1
  • 11
    • 0009887446 scopus 로고
    • Some simple gamma variate generators
    • Cheng RCH, Feast GM (1979) Some simple gamma variate generators. Applied Statistics, 28, 290-295.
    • (1979) Applied Statistics , vol.28 , pp. 290-295
    • Cheng, R.C.H.1    Feast, G.M.2
  • 12
    • 0002260099 scopus 로고
    • Variance of gene frequencies
    • Cockerham CC (1969) Variance of gene frequencies. Evolution 23, 72-84.
    • (1969) Evolution , vol.23 , pp. 72-84
    • Cockerham, C.C.1
  • 13
    • 0000704272 scopus 로고
    • Estimation of gene flow from F-statistics
    • Cockerham CC, Weir BS (1993) Estimation of gene flow from F-statistics. Evolution, 47, 855-863.
    • (1993) Evolution , vol.47 , pp. 855-863
    • Cockerham, C.C.1    Weir, B.S.2
  • 14
    • 0030296651 scopus 로고    scopus 로고
    • Citric acid cycle: A main-stream metabolic pathway influencing life span in Drosophila melanogaster?
    • DaCunha GL, DeOliveira AK (1996) Citric acid cycle: a main-stream metabolic pathway influencing life span in Drosophila melanogaster? Experimental Gerontology, 31, 705-715.
    • (1996) Experimental Gerontology , vol.31 , pp. 705-715
    • DaCunha, G.L.1    DeOliveira, A.K.2
  • 16
    • 0015310384 scopus 로고
    • The sampling theory of selectively neutral alleles
    • Ewens WJ (1972) The sampling theory of selectively neutral alleles. Theoretical Population Biology, 3, 87-112.
    • (1972) Theoretical Population Biology , vol.3 , pp. 87-112
    • Ewens, W.J.1
  • 17
    • 0017357114 scopus 로고
    • Population genetics theory in relation to the neutralist-selectionist controversy
    • Ewens WJ (1977) Population genetics theory in relation to the neutralist-selectionist controversy. Advances in Human Genetics, 8, 67-134.
    • (1977) Advances in Human Genetics , vol.8 , pp. 67-134
    • Ewens, W.J.1
  • 18
    • 0003360048 scopus 로고
    • The theoretical assessment of selective neutrality
    • eds Karlin S, Nevo E. Academic Press, New York
    • Ewens WJ, Feldman MW (1976) The theoretical assessment of selective neutrality. In: Population Genetics and Ecology (eds Karlin S, Nevo E), pp. 303-337. Academic Press, New York.
    • (1976) Population Genetics and Ecology , pp. 303-337
    • Ewens, W.J.1    Feldman, M.W.2
  • 19
    • 0038072776 scopus 로고    scopus 로고
    • MS Thesis, Bowling Green State University, Bowling Green, Ohio
    • Fernando N (1997) Sampling variation of F-statistics. MS Thesis, Bowling Green State University, Bowling Green, Ohio.
    • (1997) Sampling Variation of F-statistics
    • Fernando, N.1
  • 20
    • 0030821992 scopus 로고    scopus 로고
    • Statistical tests of neutrality of mutations against population growth, hitchhiking and background selection
    • Fu YX (1997) Statistical tests of neutrality of mutations against population growth, hitchhiking and background selection. Genetics, 147, 915-925.
    • (1997) Genetics , vol.147 , pp. 915-925
    • Fu, Y.X.1
  • 21
    • 0027453041 scopus 로고
    • Statistical tests of neutrality of mutations
    • Fu YX, Li WH (1993) Statistical tests of neutrality of mutations. Genetics, 133, 693-709.
    • (1993) Genetics , vol.133 , pp. 693-709
    • Fu, Y.X.1    Li, W.H.2
  • 22
    • 0030068754 scopus 로고    scopus 로고
    • Malate dehydrogenase phenotype, temperature and colony effects on flight metabolic rate in the honey-bee, Apis mellifera
    • Harrison JF, Nielsen DI, Page RE (1996) Malate dehydrogenase phenotype, temperature and colony effects on flight metabolic rate in the honey-bee, Apis mellifera. Functional Ecology, 10, 81-88.
    • (1996) Functional Ecology , vol.10 , pp. 81-88
    • Harrison, J.F.1    Nielsen, D.I.2    Page, R.E.3
  • 23
    • 0031969931 scopus 로고    scopus 로고
    • Island models and the coalescent process
    • Hudson RR (1998) Island models and the coalescent process. Molecular Ecology, 7, 413-418.
    • (1998) Molecular Ecology , vol.7 , pp. 413-418
    • Hudson, R.R.1
  • 24
    • 0004091829 scopus 로고
    • [translated by Charlesworth D, Charlesworth B]. Springer-Verlag, New York
    • Jacquard A (1974) The Genetic Structure of Populations [translated by Charlesworth D, Charlesworth B]. Springer-Verlag, New York.
    • (1974) The Genetic Structure of Populations
    • Jacquard, A.1
  • 26
    • 0034699110 scopus 로고    scopus 로고
    • Rapid speciation via parallel, directional selection on regulatory genetic pathways
    • Johnson NA, Porter AH (2000) Rapid speciation via parallel, directional selection on regulatory genetic pathways. Journal of Theoretical Biology, 205, 527-542.
    • (2000) Journal of Theoretical Biology , vol.205 , pp. 527-542
    • Johnson, N.A.1    Porter, A.H.2
  • 27
    • 0031239072 scopus 로고    scopus 로고
    • The effect of natural selection on estimates of genetic divergence among populations of the Atlantic salmon
    • Jordan WC, Verspoor E, Youngson AF (1997) The effect of natural selection on estimates of genetic divergence among populations of the Atlantic salmon. Journal of Fish Biology, 51, 546-560.
    • (1997) Journal of Fish Biology , vol.51 , pp. 546-560
    • Jordan, W.C.1    Verspoor, E.2    Youngson, A.F.3
  • 28
    • 0030873114 scopus 로고    scopus 로고
    • A test of neutrality based on interlocus associations
    • Kelly JK (1997) A test of neutrality based on interlocus associations. Genetics, 146, 1197-1206.
    • (1997) Genetics , vol.146 , pp. 1197-1206
    • Kelly, J.K.1
  • 29
    • 0001358930 scopus 로고
    • The stepping-stone model of population structure and the decrease of genetic correlation with distance
    • Kimura M, Weiss GH (1964) The stepping-stone model of population structure and the decrease of genetic correlation with distance. Genetics, 49, 561-576.
    • (1964) Genetics , vol.49 , pp. 561-576
    • Kimura, M.1    Weiss, G.H.2
  • 31
    • 0015879546 scopus 로고
    • Distribution of gene frequency as a test of the theory of the selective neutrality of polymorphisms
    • Lewontin RC, Krakauer J (1973) Distribution of gene frequency as a test of the theory of the selective neutrality of polymorphisms. Genetics, 74, 175-195.
    • (1973) Genetics , vol.74 , pp. 175-195
    • Lewontin, R.C.1    Krakauer, J.2
  • 32
    • 0001905977 scopus 로고
    • Detecting natural selection by comparing geographic variation in protein and DNA polymorphisms
    • ed. Golding B. Chapman & Hall, New York
    • McDonald JH (1994) Detecting natural selection by comparing geographic variation in protein and DNA polymorphisms. In: Non-Neutral Evolution (ed. Golding B), pp. 88-100. Chapman & Hall, New York.
    • (1994) Non-Neutral Evolution , pp. 88-100
    • McDonald, J.H.1
  • 33
    • 0017504006 scopus 로고
    • ST statistics obtained from a finite number of isolated populations
    • ST statistics obtained from a finite number of isolated populations. Theoretical Population Biology, 11, 307-325.
    • (1977) Theoretical Population Biology , vol.11 , pp. 307-325
    • Nei, M.1    Chakravarti, A.2
  • 34
    • 0016516814 scopus 로고
    • Lewontin-Krakauer test for neutral genes
    • Nei M, Maruyama T (1975) Lewontin-Krakauer test for neutral genes. Genetics, 80, 395.
    • (1975) Genetics , vol.80 , pp. 395
    • Nei, M.1    Maruyama, T.2
  • 36
    • 0032810519 scopus 로고    scopus 로고
    • Refugees from lost habitat and reorganization of genetic population structure
    • Porter AH (1999) Refugees from lost habitat and reorganization of genetic population structure. Conservation Biology, 13, 850-859.
    • (1999) Conservation Biology , vol.13 , pp. 850-859
    • Porter, A.H.1
  • 37
    • 0024189278 scopus 로고
    • Genetic and phenotypic population structure of the Coenonympha tullia group (Lepidoptera: Nymphalidae; Satyrinae) in California: No evidence for species boundaries
    • Porter AH, Geiger HJ (1988) Genetic and phenotypic population structure of the Coenonympha tullia group (Lepidoptera: Nymphalidae; Satyrinae) in California: no evidence for species boundaries. Canadian Journal of Zoology, 66, 2751-2765.
    • (1988) Canadian Journal of Zoology , vol.66 , pp. 2751-2765
    • Porter, A.H.1    Geiger, H.J.2
  • 38
    • 0036862212 scopus 로고    scopus 로고
    • Speciation despite gene flow when developmental pathways evolve
    • Porter AH, Johnson NA (2002) Speciation despite gene flow when developmental pathways evolve. Evolution, 56, 2103-2111.
    • (2002) Evolution , vol.56 , pp. 2103-2111
    • Porter, A.H.1    Johnson, N.A.2
  • 39
    • 0030221201 scopus 로고    scopus 로고
    • The sampling theory of neutral alleles in an island population of fluctuating size
    • Rannala B (1996) The sampling theory of neutral alleles in an island population of fluctuating size. Theoretical Population Biology, 50, 91-104.
    • (1996) Theoretical Population Biology , vol.50 , pp. 91-104
    • Rannala, B.1
  • 40
    • 0030005966 scopus 로고    scopus 로고
    • Estimating gene flow in island populations
    • Rannala B, Hartigan JA (1996) Estimating gene flow in island populations. Genetical Research, 67, 147-158.
    • (1996) Genetical Research , vol.67 , pp. 147-158
    • Rannala, B.1    Hartigan, J.A.2
  • 41
    • 0021038163 scopus 로고
    • Estimation of the coancestry coefficient: Basis for a short-term genetic distance
    • Reynolds J, Weir BS, Cockerham CC (1983) Estimation of the coancestry coefficient: basis for a short-term genetic distance. Genetics, 105, 767-779.
    • (1983) Genetics , vol.105 , pp. 767-779
    • Reynolds, J.1    Weir, B.S.2    Cockerham, C.C.3
  • 42
    • 0000625869 scopus 로고
    • Analyzing tables of statistical tests
    • Rice W (1989) Analyzing tables of statistical tests. Evolution, 43, 223-225.
    • (1989) Evolution , vol.43 , pp. 223-225
    • Rice, W.1
  • 43
    • 0016513539 scopus 로고
    • Remarks on the Lewontin-Krakauer test
    • Robertson A (1975a) Remarks on the Lewontin-Krakauer test. Genetics, 80, 396.
    • (1975) Genetics , vol.80 , pp. 396
    • Robertson, A.1
  • 44
    • 0016731849 scopus 로고
    • Gene frequency distributions as a test of selective neutrality
    • Robertson A (1975b) Gene frequency distributions as a test of selective neutrality. Genetics, 81, 775-785.
    • (1975) Genetics , vol.81 , pp. 775-785
    • Robertson, A.1
  • 45
    • 0029099781 scopus 로고
    • Properties of statistical tests of selective neutrality for DNA polymorphism data
    • Simonsen KL, Churchill GA, Aquadro CF (1995) Properties of statistical tests of selective neutrality for DNA polymorphism data. Genetics, 141, 413-429.
    • (1995) Genetics , vol.141 , pp. 413-429
    • Simonsen, K.L.1    Churchill, G.A.2    Aquadro, C.F.3
  • 46
    • 0023159436 scopus 로고
    • Gene flow and the genetic structure of natural populations
    • Slatkin M (1987) Gene flow and the genetic structure of natural populations. Science, 236, 787-792.
    • (1987) Science , vol.236 , pp. 787-792
    • Slatkin, M.1
  • 47
    • 0000392112 scopus 로고
    • Isolation by distance in equilibrium and non-equilibrium populations
    • Slatkin M (1993) Isolation by distance in equilibrium and non-equilibrium populations. Evolution, 47, 264-279.
    • (1993) Evolution , vol.47 , pp. 264-279
    • Slatkin, M.1
  • 48
    • 0024313579 scopus 로고
    • Statistical method for testing the neutral mutation hypothesis by DNA polymorphism
    • Tajima F (1989) Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics, 123, 585-595.
    • (1989) Genetics , vol.123 , pp. 585-595
    • Tajima, F.1
  • 49
    • 0016784028 scopus 로고
    • How many genes are selected in populations of Dacus oleae
    • Tsakas S, Krimbas CB (1975) How many genes are selected in populations of Dacus oleae. Genetics, 79, 675-679.
    • (1975) Genetics , vol.79 , pp. 675-679
    • Tsakas, S.1    Krimbas, C.B.2
  • 50
    • 0017119803 scopus 로고
    • Testing the heterogeneity of F values: A suggestion and a correction
    • Tsakas S, Krimbas CB (1976) Testing the heterogeneity of F values: a suggestion and a correction. Genetics, 84, 399-401.
    • (1976) Genetics , vol.84 , pp. 399-401
    • Tsakas, S.1    Krimbas, C.B.2
  • 51
    • 0034805082 scopus 로고    scopus 로고
    • The functional impact of Pgm amino acid polymorphism on glycogen content in Drosophila melanogaster
    • Verrelli BC, Eanes WF (2001) The functional impact of Pgm amino acid polymorphism on glycogen content in Drosophila melanogaster. Genetics, 159, 201-210.
    • (2001) Genetics , vol.159 , pp. 201-210
    • Verrelli, B.C.1    Eanes, W.F.2
  • 52
    • 0034856602 scopus 로고    scopus 로고
    • Interpretation of variation across marker loci as evidence of selection
    • Vitalis R, Dawson K, Boursot P (2001) Interpretation of variation across marker loci as evidence of selection. Genetics, 158, 1811-1823.
    • (2001) Genetics , vol.158 , pp. 1811-1823
    • Vitalis, R.1    Dawson, K.2    Boursot, P.3
  • 53
    • 0024256618 scopus 로고
    • Extinction and recolonization: Their effects on the genetic differentiation of local populations
    • Wade MJ, McCauley DE (1988) Extinction and recolonization: their effects on the genetic differentiation of local populations. Evolution, 42, 995-1005.
    • (1988) Evolution , vol.42 , pp. 995-1005
    • Wade, M.J.1    McCauley, D.E.2
  • 54
    • 0021944932 scopus 로고
    • Adaptation at specific loci. Differential mating success among glycolytic allozyme genotypes of Colias butterflies
    • Watt WB (1985) Adaptation at specific loci. Differential mating success among glycolytic allozyme genotypes of Colias butterflies. Genetics, 109, 157-175.
    • (1985) Genetics , vol.109 , pp. 157-175
    • Watt, W.B.1
  • 55
    • 0001432825 scopus 로고
    • Adaptation at specific loci. III. Field behavior and survivorship differences among Colias Pgi genotypes are predictable from in vitro biochemistry
    • Watt WB, Cassin RC, Swan MS (1983) Adaptation at specific loci. III. Field behavior and survivorship differences among Colias Pgi genotypes are predictable from in vitro biochemistry. Genetics, 103, 725-739.
    • (1983) Genetics , vol.103 , pp. 725-739
    • Watt, W.B.1    Cassin, R.C.2    Swan, M.S.3
  • 56
    • 0021944932 scopus 로고
    • Adaptation at specific loci. IV. Differential mating success among glycolytic allozyme genotypes of Colias butterflies
    • Watt WB, Carter PA, Blower SM (1985) Adaptation at specific loci. IV. Differential mating success among glycolytic allozyme genotypes of Colias butterflies. Genetics, 109, 157-175.
    • (1985) Genetics , vol.109 , pp. 157-175
    • Watt, W.B.1    Carter, P.A.2    Blower, S.M.3
  • 57
    • 0029925676 scopus 로고    scopus 로고
    • Adaptation at specific loci. VI. Divergence vs. parallelism of polymorphic allozymes in molecular function and fitness-component effects among Colias species (Lepidoptera, Pieridae)
    • Watt WB, Donohue K, Carter PA (1996) Adaptation at specific loci. VI. Divergence vs. parallelism of polymorphic allozymes in molecular function and fitness-component effects among Colias species (Lepidoptera, Pieridae). Molecular Biology and Evolution, 13, 699-709.
    • (1996) Molecular Biology and Evolution , vol.13 , pp. 699-709
    • Watt, W.B.1    Donohue, K.2    Carter, P.A.3
  • 58
    • 0021566877 scopus 로고
    • Estimating F-statistics for the analysis of population structure
    • Weir BS, Cockerham CC (1984) Estimating F-statistics for the analysis of population structure. Evolution, 38, 1358-1370.
    • (1984) Evolution , vol.38 , pp. 1358-1370
    • Weir, B.S.1    Cockerham, C.C.2
  • 59
    • 0026499266 scopus 로고
    • Non-equilibrium population structure in forked fungus beetles: Extinction, colonization, and the genetic variance among populations
    • Whitlock MC (1992) Non-equilibrium population structure in forked fungus beetles: extinction, colonization, and the genetic variance among populations. American Naturalist, 139, 952-970.
    • (1992) American Naturalist , vol.139 , pp. 952-970
    • Whitlock, M.C.1
  • 60
    • 0025599681 scopus 로고
    • Some population genetic consequences of colony formation and extinction: Genetic correlations within founding groups
    • Whitlock MC, McCauley DE (1990) Some population genetic consequences of colony formation and extinction: genetic correlations within founding groups. Evolution, 44, 1717-1724.
    • (1990) Evolution , vol.44 , pp. 1717-1724
    • Whitlock, M.C.1    McCauley, D.E.2
  • 62
    • 0001771498 scopus 로고
    • Evolution in Mendelian populations
    • Wright S (1931) Evolution in Mendelian populations. Genetics, 16, 97-159.
    • (1931) Genetics , vol.16 , pp. 97-159
    • Wright, S.1
  • 64
    • 0001024012 scopus 로고
    • Isolation by distance
    • Wright S (1943) Isolation by distance. Genetics, 28, 114-128.
    • (1943) Genetics , vol.28 , pp. 114-128
    • Wright, S.1
  • 65
    • 84890417804 scopus 로고
    • The genetical structure of populations
    • Wright S (1951) The genetical structure of populations. Annals of Eugenics, 15, 323-354.
    • (1951) Annals of Eugenics , vol.15 , pp. 323-354
    • Wright, S.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.