Analysis of molecular data of Arabidopsis thaliana (L.) Heynh. (Brassicaceae) with Geographical Information Systems (GIS)

Molecular Ecology

Volumn 12, Issue 4, 2003, Pages 1007-1019

  Hoffmann, Matthias H ^a,c   Glaß, Anne S ^b   Tomiuk, Jürgen ^b   Schmuths, Heike ^a   Fritsch, Reinhard M ^a   Bachmann, Konrad ^a  

^a LEIBNIZ INSTITUTE OF PLANT GENETICS AND CROP PLANT RESEARCH IPK   (Germany)

^b UNIVERSITY OF TÜBINGEN   (Germany)

^c MARTIN LUTHER UNIVERSITY HALLE WITTENBERG   (Germany)

Author keywords

Arabidopsis; Biodiversity; Biogeography; DNA sequence analysis; Geographical Information Systems; Metadata analysis

Indexed keywords

ARABIDOPSIS; EUROPE; GEOGRAPHIC INFORMATION SYSTEMS; META-ANALYSIS; VARIATION (GENETICS);

ARABIDOPSIS; ARABIDOPSIS THALIANA; EMBRYOPHYTA;

EID: 0038814858     PISSN: 09621083     EISSN: None     Source Type: Journal    
DOI: 10.1046/j.1365-294X.2003.01791.x     Document Type: Article

References (41)

1. Abbott RJ, Gomes MF (1989) Population genetic structure and outcrossing rate of Arabidopsis thaliana (L.) Heynh. Heredity, 62, 411-418.
2. Aguadé M (2001) Nucleotide sequence variation at two genes of the phenylpropanoid pathway, the FAH1 and F3H genes, in Arabidopsis thaliana. Molecular Biology and Evolution, 18, 1-9.
3. Alonso-Blanco C, Koornneef M (2000) Naturally occurring variation in Arabidopsis: an underexploited resource for plant genetics. Trends in Plant Science, 5, 22-29.
4. Avise JC (2001) Phylogeography: the History and Formation of Species. Harvard University Press, Cambridge, Massachusetts.
5. Bergelson J, Stahl E, Dudek S, Kreitman M (1998) Genetic variation within and among populations of Arabidopsis thaliana. Genetics, 148, 1311-1323.
6. Breyne P, Rombaut D, van Gysel A, van Montagu M, Gerats T (1999) AFLP analysis of genetic diversity within and between Arabidopsis thaliana ecotypes. Molecular and General Genetics, 261, 627-634.
7. Briggs D, Waiters SM (1997) Plant Variation and Evolution, 3rd edn. Cambridge University Press, Cambridge.
8. Caicedo AL, Schaal BA, Kunkel BN (1999) Diversity and molecular evolution of the RPS2 resistance gene in Arabidopsis thaliana. Proceedings of the National Academy of Sciences of the USA, 96, 302-306.
9. Comps B, Gömöry D, Letouzey J, Thiebaut B, Petit RJ (2001) Diverging trends between heterozygosity and allelic richness during postglacial colonization in the European beech. Genetics, 157, 389-397.
10. Erschadi S, Haberer G, Schöniger M, Torres-Ruiz RA (2000) Estimating genetic diversity of Arabidopsis thaliana ecotypes with amplified fragment length polymorphisms (AFLP). Theoretical and Applied Genetics, 100, 633-640.
11. ESRI-Environmental Systems Research Institute Inc. (1992) Arc/Info™. Redlands, California.
12. Fedorenko OM, Savushkin AI, Olimpienko GS (2001) Genetic diversity in natural populations of Arabidopsis thaliana (L.) Heynh. from Karelia. Russian Journal of Genetics, 37, 162-167.
13. Hauser MT, Harr B, Schlötterer C (2001) Trichome distribution in Arabidopsis thaliana and its close relative Arabidopsis lyrata: Molecular analysis of the candidate gene. Glabrous1. Molecular Biology and Evolution, 18, 1754-1763.
14. Hein J (1993) A heuristic method to reconstruct the history of sequences subject to recombination. Journal of Molecular Evolution, 36, 396-405.
15. Hewitt GM (1999) Post-glacial re-colonization of European biota. Biological Journal of the Linnean Society, 68, 87-112.
16. Hoffmann MH (2001) The distribution of Senecio vulgaris: capacity of climatic range models for predicting adventitious ranges. Flora, 196, 395-403.
17. Hoffmann MH (2002) Biogeography of Arabidopsis thaliana (L.) Heynh. (Brassicaceae). Journal of Biogeography, 29, 125-134.
18. Hudson RR, Kaplan NL (1985) Statistical properties of the number of recombination events in the history of a sample of DNA sequences. Genetics, 111, 147-164.
19. Innan H, Tajima F, Terauchi R, Miyashita NT (1996) Intragenic recombination in the Adh locus of the wild plant Arabidopsis thaliana. Genetics, 143, 1761-1770.
20. Innan H, Terauchi R, Miyashita NT (1997) Microsatellite polymorphism in natural populations of the wild plant Arabidopsis thaliana. Genetics, 146, 1441-1452.
21. Kawabe A, Miyashita NT (1999) DNA variation in the basic chitinase locus (ChiB) region of the wild plant Arabidopsis thaliana. Genetics, 153, 1445-1453.
22. Kawabe A, Innan H, Terauchi R, Miyashita NT (1997) Nucleotide polymorphism in the acidic chitinase locus (ChiA) region of the wild plant Arabidopsis thaliana. Molecular Biology and Evolution, 14, 1303-1315.
23. King G, Nienhuis J, Hussey C (1993) Genetic similarity among ecotypes of Arabidopsis thaliana estimated by analysis of restriction fragment length polymorphisms. Theoretical and Applied Genetics, 86, 1028-1032.
24. Koch MA, Haubold B, Mitchell-Olds T (2000) Comparative evolutionary analysis of Chalcone Synthase and Alcohol Dehydrogenase loci in Arabidopsis, Arabis, and related genera (Brassicaceae). Molecular Biology and Evolution, 17, 1483-1498.
25. Kuhner MK, Beerli P, Yamato J, Felsenstein J (2000) Usefulness of single nucleotide polymorphism data for estimating population parameters. Genetics, 156, 439-447.
26. Kuittinen H, Aguadé M (2000) Nucleotide variation at the CHALCONE ISOMERASE locus in Arabidopsis thaliana. Genetics, 155, 863-872.
27. Longley PA, Goodchild MF, Maguire DJ, Rhind DW (2001) Geographical Information Systems and Science. John Wiley & Sons Ltd, Chichester.
28. Loridon K, Cournoyer B, Goubely C, Depeiges A, Picard G (1998) Length polymorphism and allele structure of trinucleotide microsatellites in natural accessions of Arabidopsis thaliana. Theoretical and Applied Genetics, 97, 591-604.
29. Miyashita NT, Kawabe A, Innan H (1999) DNA variation in the wild plant Arabidopsis thaliana revealed by amplified fragment length polymorphism analysis. Genetics, 152, 1723-1731.
30. Nei M (1987). Molecular Evolutionary Genetics. Columbia University Press, New York.
31. Price RA, Palmer JD, Al-Shehbaz IA (1994) Systematic relationships of Arabidopsis: a molecular and morphological perspective. In: Meyerowitz EM, Somerville CR, eds. Arabidopsis, pp. 7-19. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York.
32. Purugganan MD, Suddith JI (1998) Molecular population genetics of the Arabidopsis CAULIFLOWER regulatory gene: Nonneutral evolution and naturally occurring variation in floral homeotic function. Proceedings of the National Academy of Sciences of the USA, 95, 8130-8134.
33. Purugganan MD, Suddith JI (1999) Molecular population genetics of floral homeotic loci: departures from the equilibrium-neutral model at the APETALA3 and PISTILLATA genes of Arabidopsis thaliana. Genetics, 151, 839-848.
34. Rozas J, Rozas R (1999) DnaSP, Version 3: an integrated program for molecular population genetics and molecular evolution analysis. Bioinformatics, 15, 174-175.
35. Sharbel TF, Haubold B, Mitchell-Olds T (2000) Genetic isolation by distance in Arabidopsis thaliana: biogeography and postglacial colonization of Europe. Molecular Ecology, 9, 2109-2118.
36. Sokal RR, Rohlf FJ (2001) Biometry: the Principles and Practice of Statistics in Biological Research, 3rd edn. Freeman, New York.
37. Stahl EA, Dwyer G, Mauricio R, Kreitman M, Bergelson J (1999) Dynamics of disease resistance polymorphism at the Rpm1 locus of Arabidopsis. Nature, 400, 667-671.
38. Stehlik I, Schneller JJ, Bachmann K (2001) Resistance or emigration: response of the high-alpine plant Eritrichum nahum (L.) Gaudin to the ice age within the Central Alps. Molecular Ecology, 10, 357-370.
39. Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG (1997) The ClustalX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Research, 24, 4876-4882.
40. Ullrich H, Lättig K, Brennicke A, Knoop V (1997) Mitochondrial DNA variations and nuclear RFLPs reflect different genetic similarities among 23 Arabidopsis thaliana ecotypes. Plant Molecular Biology, 33, 37-45.
41. Welk E, Schubert K, Hoffmann MH (2002) Present and potential distribution of invasive garlic mustard (Alliaria petiolata) in North America. Diversity and Distributions, 8, 219-233.