Evidence for chimeric sequences formed during random arbitrarily primed PCR

Journal of Microbiological Methods

Volumn 54, Issue 3, 2003, Pages 427-431

  Chang, In Seop ^a,b   Ballard, Jimmy D ^a   Krumholz, Lee R ^a  

^a UNIVERSITY OF OKLAHOMA   (United States)

^b Korea Institute of Science and Technology   (South Korea)

Author keywords

[No Author keywords available]

Indexed keywords

RIBOSOME RNA;

ARTICLE; CHIMERA; DNA TRANSPOSITION; GENE EXPRESSION; GENE MUTATION; GENE SEQUENCE; GENETIC RECOMBINATION; GENOME ANALYSIS; NONHUMAN; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; RIBOSOME SUBUNIT; SEQUENCE ANALYSIS; SULFATE REDUCING BACTERIUM;

EID: 0038798529     PISSN: 01677012     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0167-7012(03)00093-9     Document Type: Article

References (16)

1. Chang I.S., Shin P.K., Kim B.H. Biological treatment of acid mine drainage under sulphate-reducing conditions with solid waste materials as substrate. Water Res. 34:2000;1269-1277.
2. Faslage R., Berceanu M., Humboldt Y., Wendt M., Oberender H. Primer design for a prokaryotic differential display RT-PCR. Nucleic Acids Res. 25:1997;1830-1835.
3. Krumholz L.R., Bryant M.P. Eubacterium oxidoreducens sp. nov. requiring H2 or formate to degrade gallate, pyrogallol, phloroglucinol and quercetin. Arch. Microbiol. 144:1986;8-14.
4. Liang P., Pardee A.B. Differential display of eukaryotic messenger RNA by means of the polymerase chain reaction. Science. 257:1992;967-971.
5. Mathieu-Daude F., Cheng R., Welsh J., McClelland M. Screening of differently amplified cDNA products from RNA arbitrarily primer PCR fingerprints using single strand conformation polymorphism (SSCP) gels. Nucleic Acids Res. 24:1996;1504-1507.
6. McClelland M., Honeycutt R., Mathieu-Daude F., Vogt T., Welsh J. Finger printing by arbitrarily primer PCR. Methods Mol. Biol. 85:1997;13-24.
7. Mou L., Miller H., Li J., Wang E., Chalofour L. Improvements to the differential display method for gene analysis. Biochem. Biophys. Res. Commun. 199:1994;564-569.
8. Nagel A., Fleming J.T., Sayler G.S. Reduction of false positives in prokaryotic mRNA differential display. BioTechniques. 26:1999;641-648.
9. Nagel A.C., Fleming J.T., Sayler G.S., Beattie K.L. Screening for ribosomal-based false positives following prokaryotes mRNA differential display. BioTechniques. 30:2001;988-996.
10. Rothschild D.B., Brewer C.S., Bowden D.W. DD/AP-PCR: combination of differential display and arbitrarily primed PCR of oligo (dt) cDNA. Anal. Biochem. 245:1997;48-54.
11. Sani R.K., Peyton B.M., Brown L.T. Copper-induced inhibition of growth of Desulfovibrio desulfuricans G20: assessment of its toxicity and correlation with those of zinc and lead. Appl. Environ. Microbiol. 67:2001;4765-4772.
12. Shepard B., Gilmore M. Identification of aerobically and anaerobically induced genes in Enterococcus faecalis by random arbitrarily primed PCR. Appl. Environ. Microbiol. 65:1999;1470-1476.
13. Speksnijder A.G.C.L., Kowalchuk G.A., De Jong S., Kline E., Stephen J.R., Laanbroek H.J. Microvariation artifacts introduced by PCR and cloning of closely related 16S rRNA gene sequences. Appl. Environ. Microbiol. 67:2001;469-472.
14. Steger J.L., Vincent C., Ballard J.D., Krumholz L.R. Desulfovibrio sp. genes involved in the respiration of sulfate during metabolism of hydrogen and lactate. Appl. Environ. Microbiol. 68:2001;1932-1947.
15. Waybrant K.R., Blowes D.W., Ptacek C.J. Selection of reactive mixtures for use in permeable reactive walls for treatment of mine drainage. Environ. Sci. Technol. 32:1998;1972-1979.
16. White C., Gadd G.M. Mixed sulphate-reducing bacterial cultures for bioprecipitation of toxic metals: factorial and response-surface analysis of the effects of dilution rate, sulphate and substrate concentration. Microbiology. 142:1996;2197-2205.