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Volumn 45, Issue 2, 2003, Pages 161-171

A novel approach for high throughput cultivation assays and the isolation of planktonic bacteria

Author keywords

Bacterioplankton; Cultivation; Culturability; Most probable number technique

Indexed keywords

ASSAY; BACTERIOPLANKTON; EXPERIMENTAL APPARATUS;

EID: 0038784800     PISSN: 01686496     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0168-6496(03)00133-8     Document Type: Article
Times cited : (52)

References (36)
  • 1
    • 0028946084 scopus 로고
    • Phylogenetic identification and in situ detection of individual microbial cells without cultivation
    • Amann R., Ludwig W., Schleifer K. Phylogenetic identification and in situ detection of individual microbial cells without cultivation. Microbiol. Rev. 59:1995;143-169.
    • (1995) Microbiol. Rev. , vol.59 , pp. 143-169
    • Amann, R.1    Ludwig, W.2    Schleifer, K.3
  • 2
  • 4
    • 0028594902 scopus 로고
    • High abundance of Archaea in Antarctic marine picoplankton
    • DeLong E.F., Wu K.Y., Prezelin B.B., Jovine R.V. High abundance of Archaea in Antarctic marine picoplankton. Nature. 371:1994;695-697.
    • (1994) Nature , vol.371 , pp. 695-697
    • DeLong, E.F.1    Wu, K.Y.2    Prezelin, B.B.3    Jovine, R.V.4
  • 5
    • 0030845385 scopus 로고    scopus 로고
    • Growth of silicone-immobilized bacteria on polycarbonate membrane filters, a technique to study microcolony formation under anaerobic conditions
    • Hojberg O., Binnerup S.J., Sorensen J. Growth of silicone-immobilized bacteria on polycarbonate membrane filters, a technique to study microcolony formation under anaerobic conditions. Appl. Environ. Microbiol. 63:1997;2920-2924.
    • (1997) Appl. Environ. Microbiol. , vol.63 , pp. 2920-2924
    • Hojberg, O.1    Binnerup, S.J.2    Sorensen, J.3
  • 6
    • 0000853758 scopus 로고
    • On the lactic fermentation and its bearings on pathology
    • Lister J. On the lactic fermentation and its bearings on pathology. Trans. Pathol. Soc. Lond. 29:1878;425-467.
    • (1878) Trans. Pathol. Soc. Lond. , vol.29 , pp. 425-467
    • Lister, J.1
  • 7
    • 0031804014 scopus 로고    scopus 로고
    • Improved most-probable-number method to detect sulfate-reducing bacteria with natural media and a radiotracer
    • Vester F., Ingvorsen K. Improved most-probable-number method to detect sulfate-reducing bacteria with natural media and a radiotracer. Appl. Environ. Microbiol. 64:1998;1700-1707.
    • (1998) Appl. Environ. Microbiol. , vol.64 , pp. 1700-1707
    • Vester, F.1    Ingvorsen, K.2
  • 8
    • 0031736825 scopus 로고    scopus 로고
    • Enumeration and detection of anaerobic ferrous iron-oxidizing, nitrate-reducing bacteria from diverse European sediments
    • Straub K.L., Buchholz-Cleven B.E.E. Enumeration and detection of anaerobic ferrous iron-oxidizing, nitrate-reducing bacteria from diverse European sediments. Appl. Environ. Microbiol. 64:1998;4846-4856.
    • (1998) Appl. Environ. Microbiol. , vol.64 , pp. 4846-4856
    • Straub, K.L.1    Buchholz-Cleven, B.E.E.2
  • 10
    • 0035651017 scopus 로고    scopus 로고
    • Microbial communities in the chemocline of a hypersaline deep-sea basin (Urania basin, Mediterranean Sea)
    • Sass A.M., Sass H., Coolen M.J., Cypionka H., Overmann J. Microbial communities in the chemocline of a hypersaline deep-sea basin (Urania basin, Mediterranean Sea). Appl. Environ. Microbiol. 67:2001;5392-5402.
    • (2001) Appl. Environ. Microbiol. , vol.67 , pp. 5392-5402
    • Sass, A.M.1    Sass, H.2    Coolen, M.J.3    Cypionka, H.4    Overmann, J.5
  • 11
    • 0034551748 scopus 로고    scopus 로고
    • Detection of abundant sulphate-reducing bacteria in marine oxic sediment layers by a combined cultivation and molecular approach
    • Wieringa E.B.A., Overmann J., Cypionka H. Detection of abundant sulphate-reducing bacteria in marine oxic sediment layers by a combined cultivation and molecular approach. Environ. Microbiol. 2:2000;417-427.
    • (2000) Environ. Microbiol. , vol.2 , pp. 417-427
    • Wieringa, E.B.A.1    Overmann, J.2    Cypionka, H.3
  • 13
    • 0033975790 scopus 로고    scopus 로고
    • A comparison of enumeration methods for culturable Pseudomonas fluorescens cells marked with green fluorescent protein
    • Cassidy M.B., Leung K.T., Lee H., Trevors J.T. A comparison of enumeration methods for culturable Pseudomonas fluorescens cells marked with green fluorescent protein. J. Microbiol. Methods. 40:2000;135-145.
    • (2000) J. Microbiol. Methods , vol.40 , pp. 135-145
    • Cassidy, M.B.1    Leung, K.T.2    Lee, H.3    Trevors, J.T.4
  • 14
    • 0029661226 scopus 로고    scopus 로고
    • Enrichment culture and microscopy conceal diverse thermophilic Synechococcus populations in a single hot spring microbial mat habitat
    • Ferris M.J., Ruff-Roberts A.L., Kopczynski E.D., Bateson M.M., Ward D.M. Enrichment culture and microscopy conceal diverse thermophilic Synechococcus populations in a single hot spring microbial mat habitat. Appl. Environ. Microbiol. 62:1996;1045-1050.
    • (1996) Appl. Environ. Microbiol. , vol.62 , pp. 1045-1050
    • Ferris, M.J.1    Ruff-Roberts, A.L.2    Kopczynski, E.D.3    Bateson, M.M.4    Ward, D.M.5
  • 15
    • 0036323967 scopus 로고    scopus 로고
    • Cyclic AMP and acyl homoserine lactones increase the cultivation efficiency of heterotrophic bacteria from the central Baltic Sea
    • Bruns A., Cypionka H., Overmann J. Cyclic AMP and acyl homoserine lactones increase the cultivation efficiency of heterotrophic bacteria from the central Baltic Sea. Appl. Environ. Microbiol. 68:2002;3978-3987.
    • (2002) Appl. Environ. Microbiol. , vol.68 , pp. 3978-3987
    • Bruns, A.1    Cypionka, H.2    Overmann, J.3
  • 17
    • 0242684409 scopus 로고    scopus 로고
    • Effect of signal compounds and incubation conditions on the culturability of freshwater bacterioplankton
    • Bruns A., Nübel U., Cypionka H., Overmann J. Effect of signal compounds and incubation conditions on the culturability of freshwater bacterioplankton. Appl. Environ. Microbiol. 60:2003;1980-1989.
    • (2003) Appl. Environ. Microbiol. , vol.60 , pp. 1980-1989
    • Bruns, A.1    Nübel, U.2    Cypionka, H.3    Overmann, J.4
  • 18
    • 0034933418 scopus 로고    scopus 로고
    • Multitude and temporal variability of ecological niches as indicated by the diversity of cultivated bacterioplankton
    • Jaspers E., Nauhaus K., Cypionka H., Overmann J. Multitude and temporal variability of ecological niches as indicated by the diversity of cultivated bacterioplankton. FEMS Microbiol. Ecol. 36:2001;153-164.
    • (2001) FEMS Microbiol. Ecol. , vol.36 , pp. 153-164
    • Jaspers, E.1    Nauhaus, K.2    Cypionka, H.3    Overmann, J.4
  • 19
    • 2542508293 scopus 로고    scopus 로고
    • Diversity and structure of the methanogenic community in anoxic rice paddy soil microcosms as examined by cultivation and direct 16S rRNA gene sequence retrieval
    • Grosskopf R., Janssen P.H., Liesack W. Diversity and structure of the methanogenic community in anoxic rice paddy soil microcosms as examined by cultivation and direct 16S rRNA gene sequence retrieval. Appl. Environ. Microbiol. 64:1998;960-969.
    • (1998) Appl. Environ. Microbiol. , vol.64 , pp. 960-969
    • Grosskopf, R.1    Janssen, P.H.2    Liesack, W.3
  • 20
    • 0036324056 scopus 로고    scopus 로고
    • High-throughput methods for culturing microorganisms in very-low-nutrient media yield diverse new marine isolates
    • Connon S.A., Giovannoni S.J. High-throughput methods for culturing microorganisms in very-low-nutrient media yield diverse new marine isolates. Appl. Environ. Microbiol. 68:2002;3878-3885.
    • (2002) Appl. Environ. Microbiol. , vol.68 , pp. 3878-3885
    • Connon, S.A.1    Giovannoni, S.J.2
  • 21
    • 0031911685 scopus 로고    scopus 로고
    • The ecological niche of the consortium 'Pelochromatium roseum'
    • Overmann J., Tuschak C., Fröstl J.M., Sass H. The ecological niche of the consortium 'Pelochromatium roseum'. Arch. Microbiol. 169:1998;120-128.
    • (1998) Arch. Microbiol. , vol.169 , pp. 120-128
    • Overmann, J.1    Tuschak, C.2    Fröstl, J.M.3    Sass, H.4
  • 22
    • 84986870589 scopus 로고
    • Use of DAPI for identifying and counting aquatic microflora
    • Porter K.G., Feig Y.S. Use of DAPI for identifying and counting aquatic microflora. Limnol. Oceanogr. 25:1980;943-948.
    • (1980) Limnol. Oceanogr. , vol.25 , pp. 943-948
    • Porter, K.G.1    Feig, Y.S.2
  • 23
    • 0033017781 scopus 로고    scopus 로고
    • Evaluation of cell activity and of methods for the cultivation of bacteria from a natural lake community
    • Bartscht K., Cypionka H., Overmann J. Evaluation of cell activity and of methods for the cultivation of bacteria from a natural lake community. FEMS Microbiol. Ecol. 28:1999;249-259.
    • (1999) FEMS Microbiol. Ecol. , vol.28 , pp. 249-259
    • Bartscht, K.1    Cypionka, H.2    Overmann, J.3
  • 24
    • 0027260811 scopus 로고
    • A computer program for the determination of most probable number and its confidence limits
    • Klee A.J. A computer program for the determination of most probable number and its confidence limits. J. Microbiol. Methods. 18:1993;91-98.
    • (1993) J. Microbiol. Methods , vol.18 , pp. 91-98
    • Klee, A.J.1
  • 25
    • 0027338910 scopus 로고
    • Viability and isolation of marine bacteria by dilution culture: Theory, procedures, and initial results
    • Button D.K., Schut F., Quang P., Martin R., Robertson B.R. Viability and isolation of marine bacteria by dilution culture: Theory, procedures, and initial results. Appl. Environ. Microbiol. 59:1993;881-891.
    • (1993) Appl. Environ. Microbiol. , vol.59 , pp. 881-891
    • Button, D.K.1    Schut, F.2    Quang, P.3    Martin, R.4    Robertson, B.R.5
  • 26
    • 0001868071 scopus 로고
    • Denaturing gradient gel electrophoresis of PCR-amplified 16S rDNA - a new molecular approach to analyse the genetic diversity of mixed microbial communities
    • Akkermans, A.D.L., Van Elsas, J.D. and De Bruijn F.J., Eds. Kluwer, Dordrecht
    • Muyzer, G., Hottenträger, S., Teske, A. and Waver, C. (1995) Denaturing gradient gel electrophoresis of PCR-amplified 16S rDNA - a new molecular approach to analyse the genetic diversity of mixed microbial communities. In: Molecular Microbial Ecology Manual (Akkermans, A.D.L., Van Elsas, J.D. and De Bruijn F.J., Eds.), pp. 3.4.4.1-3.4.4.22. Kluwer, Dordrecht.
    • (1995) Molecular Microbial Ecology Manual , pp. 3441-34422
    • Muyzer, G.1    Hottenträger, S.2    Teske, A.3    Waver, C.4
  • 27
    • 0032809368 scopus 로고    scopus 로고
    • Specific detection of different phylogenetic groups of chemocline bacteria based on PCR and denaturing gradient gel electrophoresis of 16S rRNA gene fragments
    • Overmann J., Coolen M.J.L., Tuschak C. Specific detection of different phylogenetic groups of chemocline bacteria based on PCR and denaturing gradient gel electrophoresis of 16S rRNA gene fragments. Arch. Microbiol. 172:1999;83-94.
    • (1999) Arch. Microbiol. , vol.172 , pp. 83-94
    • Overmann, J.1    Coolen, M.J.L.2    Tuschak, C.3
  • 28
    • 85031155674 scopus 로고    scopus 로고
    • Cypionka, H. (1999) Program RarFac. Available at http://www.icbm.de/~palmikro/downlist.htm.
    • (1999) Program RarFac
    • Cypionka, H.1
  • 32
    • 76549256965 scopus 로고
    • Estimation of bacterial densities by means of the 'most probable number'
    • Cochran W.G. Estimation of bacterial densities by means of the 'most probable number'. Biometrics. 2:1950;105-116.
    • (1950) Biometrics , vol.2 , pp. 105-116
    • Cochran, W.G.1
  • 34
    • 0024708512 scopus 로고
    • Estimation of microbial densities from dilution count experiments
    • Haas C.N. Estimation of microbial densities from dilution count experiments. Appl. Environ. Microbiol. 55:1989;1934-1942.
    • (1989) Appl. Environ. Microbiol. , vol.55 , pp. 1934-1942
    • Haas, C.N.1
  • 35
    • 0027867928 scopus 로고
    • Limnetic macroscopic organic aggregates (lake snow): Occurrence, characteristics, and microbial dynamics in Lake Constance
    • Grossart H.-P., Simon M. Limnetic macroscopic organic aggregates (lake snow): occurrence, characteristics, and microbial dynamics in Lake Constance. Limnol. Oceanogr. 38:1993;532-546.
    • (1993) Limnol. Oceanogr. , vol.38 , pp. 532-546
    • Grossart, H.-P.1    Simon, M.2
  • 36
    • 0029796310 scopus 로고    scopus 로고
    • Sequence heterogeneities of genes encoding 16S rRNAs in Paenibacillus polymyxa detected by temperature gradient gel electrophoresis
    • Nübel U., Engelen B., Felske A., Snaidr J., Wieshuber A., Amann R.I., Ludwig W., Backhaus H. Sequence heterogeneities of genes encoding 16S rRNAs in Paenibacillus polymyxa detected by temperature gradient gel electrophoresis. J. Bacteriol. 178:1996;5636-5643.
    • (1996) J. Bacteriol. , vol.178 , pp. 5636-5643
    • Nübel, U.1    Engelen, B.2    Felske, A.3    Snaidr, J.4    Wieshuber, A.5    Amann, R.I.6    Ludwig, W.7    Backhaus, H.8


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