Phylogenetic relationships in Disa based on non-coding trnL-trnF chloroplast sequences: Evidence of numerous repeat regions

American Journal of Botany

Volumn 88, Issue 11, 2001, Pages 2088-2100

  Bellstedt, Dirk U ^a   Linder, H Peter ^b   Harley, Eric H ^b  

^a STELLENBOSCH UNIVERSITY   (South Africa)

^b UNIVERSITY OF CAPE TOWN   (South Africa)

Author keywords

Brownleeinae; Coryciinae; Diseae; Disinae; Molecular phylogeny; Orchidaceae; Satyriinae; trnL trnF

Indexed keywords

EID: 0038751959     PISSN: 00029122     EISSN: None     Source Type: Journal    
DOI: 10.2307/3558434     Document Type: Article

References (36)

1. BATEMAN, R. M. 2001. Evolution and classification of European orchids: insights from molecular and morphological characters. Journal Europäische Orchideen 33: 500-577.
2. BATEMAN, R. M., P. M. HOLLINGSWORTH, J. PRESTON, Y.-B. LUO, A. M. PRIDGEON, AND M. W. CHASE. 2001. Phylogenetics: Orchidinae. In A. M. Pridgeon, P. L. Cribb, M. W. Chase, and F. N. Rasmussen [eds.], Genera Orchidacearum. vol. 2, Orchidoideae, 225-233. Oxford University Press, Oxford, UK.
3. CAMERON, K. M., M. W. CHASE, W. M. WHITTEN, P. J. KORES, D. C. JARRELL, V. A. ALBERT, T. YUKAWA, H. G. HILLS, AND D. H. GOLDMAN. 1999. A phylogenetic analysis of the Orchidaceae: evidence from rbcL nucleotide sequences. American Journal of Botany 86: 208-224.
4. CUMMINGS, M. P., L. M. KING, AND E. A. KELLOGG. 1994. Slipped-strand mispairing in the plastid gene: rpoC2 in grasses (Poaceae). Molecular Biology and Evolution 11: 1-8.
5. DOUZERY, E. J. P., A. M. PRIDGEON, P. KORES, H. P. LINDER, H. KURZWEIL, AND M. W. CHASE. 1999. Molecular phylogenetics of Diseae (Orchidaceae): a contribution from nuclear ribosomal ITS sequences. American Journal of Botany 86: 887-899.
6. DOYLE, J., AND J. DOYLE. 1987. A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Photochemical Bulletin 19: 11-15.
7. DRESSLER, R. L. 1993. Phylogeny and classification of the orchid family. Cambridge University Press, Cambridge, UK.
8. ERIKSSON, T., AND N. WIKSTROM. 1995. AutoDecay. Stockholm University, Stockholm, Sweden.
9. FANGAN, B. M., B. STEDJE, O. E. STABBETORP, E. S. JENSEN, AND K. S. JAKOBSEN. 1994. A general approach for PCR-amplification and sequencing of chloroplast DNA from crude vascular plant and algal tissue. BioTechniques 16: 484-494.
10. FARRIS, J. S. 1969. A successive approximations approach to character weighting. Systematic Zoology 18: 374-385.
11. FARRIS, J. S. 1989. The retention index and the rescaled consistency index. Cladistics 5: 417-419.
12. FELSENSTEIN, J. 1985. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39: 783-791.
13. GIRIBET, G., AND W. C. WHEELER. 1999. On gaps. Molecular Phylogenetics and Evolution 13: 132-143.
14. HARLEY, E. H. 1998. DNA and Protein sequence alignment DAPSA. Computer program distributed as shareware by the author. University of Cape Town, Cape Town, South Africa.
15. JOHNSON, S. D., H. P. LINDER, AND K. STEINER. 1998. Phylogeny and radiation of pollination systems in Disa (Orchidaceae). American Journal of Botany 85: 402-411.
16. JOHNSON, S. D., K. STEINER, AND H. KURZWEIL. 1994. Auto-pollination in Disa species (Orchidaceae) of the Cape Mountain cloud zone. Lindleyana 9: 3-6.
17. KURZWEIL, H., H. P. LINDER, W. L. STERN, AND A. PRIDGEON. 1995. Comparative vegetative anatomy and the classification of the Diseae (Orchidaceae). Botanical Journal of the Linnean Society 117: 171-220.
18. LEVINSON, G., AND G. A. GUTMAN. 1987. Slipped-strand mispairing: a major mechanism for DNA sequence evolution. Molecular Biology and Evolution 4: 203-221.
19. LINDER, H. P. 1981a. Taxonomic studies on the Disinae III. A revision of Disa Berg. excluding Sect. Micranthae. Contributions from the Bolus Herbarium 9: 1-370.
20. LINDER, H. P. 1981b. Taxonomic studies on the Disinae IV. A revision of Disa Berg. Sect. Micranthae. Bulletin du Jardin Botanique National de Belgique 51: 255-346.
21. LINDER, H. P. 1981c. Taxonomic studies on the Disinae VI. A revision of the genus Herschelia. Bothalia 13: 365-388.
22. LINDER, H. P. 1981d. Taxonomic studies on the Disinae V. A revision of the genus Monadenia. Bothalia 13: 339-363.
23. LINDER, H. P. 1986. Notes on the phylogeny Orchidoideae, with particular reference to the Diseae. Lindleyana 1: 51-64.
24. LINDER, H. P. 1990. Hybrids in Disa (Diseae-Orchidoideae). Lindleyana 5: 224-230.
25. LINDER, H. P., S. D. JOHNSON, AND W. R. LILTVED. 1998. Disa virginalis (Diseae: Orchidoideae: Orchidaceae): a new species from southern Africa. Novon 8: 405-407.
26. LINDER, H. R. AND H. KURZWEIL. 1990. Floral morphology and phylogeny of the Disinae (Orchidaceae). Botanical Journal of the Linnean Society 102: 287-302.
27. LINDER, H. P., AND H. KURZWEIL. 1994. The phylogeny and classification of the Diseae (Orchidoideae: Orchidaceae). Annals of the Missouri Botanical Garden 81: 687-713.
28. LINDER, H. P., AND H. KURZWEIL. 1999. Orchids of Southern Africa. A. A. Balkema, Rotterdam, The Netherlands.
29. LINDLEY, J. 1830-1840. Genera and species of orchidaceous plants. Ridgeways, London, UK.
30. MADDISON, D. R. 1991. The discovery and importance of multiple islands of most-parsimonious trees. Systematic Zoology 40: 315-328.
31. PRIDGEON, A. M., R. M. BATEMAN, A. V. COX, J. R. HAPEMAN, AND M. W. CHASE. 1997. Phylogenetics of Subtribe Orchidinae (Orchidoideae, Orchidaceae) based on nuclear ITS sequences. 1. Intergeneric relationships and polyphyly of Orchis sensu lato. Lindleyana 12: 89-109.
32. ROLFE, R. A. 1912-1913. Orchidaceae. In W. T. Thiselton-Dyer [ed.], Flora Capensis, vol. V, sect. 3, 1-332. L. Reeve & Co., London, UK.
33. SCHLECHTER, R. 1901. Monographie der Diseae. Botanische Jahrbücher für Systematic 31: 134-313.
34. STEINER, K., V. B. WHITEHEAD, AND S. D. JOHNSON. 1994. Floral and pollinator divergence in two sexually deceptive South African orchids. American Journal of Botany 81: 185-194.
35. SWOFFORD, D. L. 1993. PAUP: phylogenetic analysis using parsimony, version 4.1. Illinois Natural History Survey, Champaign, Illinois, USA.
36. TABERLET, P., L. GIELLY, G. PAUTOU, AND J. BOUVET. 1991. Universal primers for amplification of three non-coding regions of chloroplast DNA. Plant Molecular Biology 17: 1105-1109.