Cre induces an asymmetric DNA bend in its target loxP site

Journal of Biological Chemistry

Volumn 278, Issue 25, 2003, Pages 23118-23129

  Lee, Linda ^a   Chu, Linda C H ^a   Sadowski, Paul D ^a  

^a UNIVERSITY OF TORONTO   (Canada)

Author keywords

[No Author keywords available]

Indexed keywords

BIOCATALYSTS; DNA; MOLECULES;

NUCLEOTIDES;

BIOCHEMISTRY;

ADENINE; CRE RECOMBINASE; CURVED DNA; CYTOSINE; GUANINE; LYSINE; PHOSPHODIESTERASE; PROTEIN; PROTEIN LOXP; THYMIDINE; UNCLASSIFIED DRUG;

ARTICLE; BASE PAIRING; BINDING AFFINITY; BINDING SITE; CATALYSIS; CONTROLLED STUDY; DNA SEQUENCE; DNA STRAND; DNA STRUCTURE; GENE TARGETING; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROTEIN DNA BINDING; PROTEIN PROTEIN INTERACTION; STRUCTURE ANALYSIS;

AMINO ACID SUBSTITUTION; BASE PAIRING; BASE SEQUENCE; BINDING SITES; DNA; DNA METHYLATION; INTEGRASES; KINETICS; MUTAGENESIS, SITE-DIRECTED; NUCLEIC ACID CONFORMATION; OLIGODEOXYRIBONUCLEOTIDES; PLASMIDS; RECOMBINANT PROTEINS; RECOMBINATION, GENETIC; RESTRICTION MAPPING; SUBSTRATE SPECIFICITY; VIRAL PROTEINS;

EID: 0038677710     PISSN: 00219258     EISSN: None     Source Type: Journal    
DOI: 10.1074/jbc.M302272200     Document Type: Article

References (51)

1. Austin, S., Ziese, M., and Sternberg, N. (1981) Cell 25, 729-736
2. Hoess, R. H., and Abremski, K. (1990) in Nucleic Acids and Molecular Biology (Eckstein, F., and Lilley, D. M. J., eds) Vol. 4, pp. 99-109, Springer-Verlag, Berlin
3. Sadowski, P. D. (1993) FASEB J. 7, 760-767
4. Landy, A. (1993) Curr. Opin. Genet. Dev. 3, 699-707
5. Jayaram, M., Tribble, G., and Grainge, I. (2002) in Mobile DNA II (Craig, N. L., Craigie, R., Gellert, M., and Lambowitz, A. M., eds) pp. 192-218, ASM Press, Washington, D. C.
6. Argos, P., Landy, A., Abremski, K., Egan, J. B., Haggard, L. E., Hoess, R. H., Kahn, M. L., Kalionis, B., Narayana, S. V., Pierson, L. d., Sternberg, N., and Leong, J. M. (1986) EMBO J. 5, 433-440
7. Abremski, K. E., and Hoess, R. H. (1992) Protein Engineering 5, 87-91
8. Nash, H. (1996) in Escherichia coli and Salmonella typhimurium: Cellular and Molecular Biology (Neidhardt, F., Curtiss, R., Ingraham, J., Lin, E., and Low, K., eds) pp. 2363-2376, ASM Press, Washington, D. C.
9. Nunes-Düby, S. E., Kwon, H. J., Tirumalai, R. S., Ellenberger, T., and Landy, A. (1998) Nucleic Acids Res. 26, 391-406
10. Holliday, R. (1964) Genet. Res. 5, 282-304
11. Hoess, R., Wierzbicki, A., and Abremski, K. (1987) Proc. Natl. Acad. Sci. U. S. A. 84, 6840-6844
12. Nunes-Düby, S., Matsumoto, L., and Landy, A. (1987) Cell 50, 779-788
13. Kitts, P. A., and Nash, H. A. (1987) Nature 329, 346-348
14. Kitts, P. A., and Nash, H. A. (1988) Nucleic Acids Res. 16, 6839-6856
15. Meyer-Leon, L., Huang, L. C., Umlauf, S. W., Cox, M. M., and Inman, R. B. (1988) Mol. Cell. Biol. 8, 3784-3796
16. Jayaram, M., Crain, K. L., Parsons, R. L., and Harshey, R. M. (1988) Proc. Natl. Acad. Sci. U. S. A. 85, 7902-7906
17. Arciszewska, L. K., and Sherratt, D. J. (1995) EMBO J. 14, 2112-2120
18. Hoess, R. H., Ziese, M., and Sternberg, N. (1982) Proc. Natl. Acad. Sci. U. S. A. 79, 3398-3402
19. Hoess, R., Abremski, K., and Sternberg, N. (1984) Cold Spring Harbor Symp. Quant. Biol. 49, 761-768
20. Hoess, R., Abremski, K., Irwin, S., Kendall, M., and Mack, A. (1990) J. Mol. Biol. 216, 873-882
21. Van Duyne, G. D. (2001) Annu. Rev. Biophys. Biomol. Struct. 30, 87-104
22. Hoess, R. H., and Abremski, K. (1985) J. Mol. Biol. 181, 351-362
23. Guo, F., Gopaul, D. N., and van Duyne, G. D. (1997) Nature 389, 40-46
24. Gopaul, D. N., Guo, F., and Van Duyne, G. D. (1998) EMBO J. 17, 4175-4187
25. Guo, F., Gopaul, D. N., and Van Duyne, G. D. (1999) Proc. Natl. Acad. Sci. U. S. A. 96, 7143-7148
26. Gopaul, D. N., and Van Duyne, G. D. (1999) Curr. Opin. Struct. Biol. 9, 14-20
27. Martin, S. S., Pulido, E., Chu, V. C., Lechner, T. S., and Baldwin, E. P. (2002) J. Mol. Biol. 319, 107-127
28. Hamilton, D. L., and Abremski, K. (1984) J. Mol. Biol. 178, 481-486
29. Hoess, R. H., Wierzbicki, A., and Abremski, K. (1990) in Structure & Methods Vol. 1: Human Genome Initiative & DNA Recombination (Sarma, R. H., and Sarma, M. H., eds) pp. 203-213, Adenine Press, Guilderland, NY
30. Shaikh, A. C., and Sadowski, P. D. (2000) J. Biol. Chem. 275, 30186-30195
31. Lee, G., and Saito, I. (1998) Gene (Amst.) 216, 55-65
32. Lee, L., and Sadowski, P. D. (2003) J. Mol. Biol. 326, 397-412
33. Lee, L., and Sadowski, P. D. (2001) J. Biol. Chem. 276, 31092-31098
34. Zwieb, C., Kim, J., and Adhya, S. (1989) Genes & Dev. 3, 606-611
35. Zinkel, S. S., and Crothers, D. M. (1987) Nature 328, 178-181
36. Shaikh, A. C., and Sadowski, P. D. (1997) J. Biol. Chem. 272, 5695-5702
37. Beatty, L. G., and Sadowski, P. D. (1988) J. Mol. Biol. 204, 283-294
38. Funnell, B. E., and Gagnier, L. (1993) J. Biol. Chem. 268, 3616-3624
39. Craig, N. L., and Nash, H. A. (1984) Cell 39, 707-716
40. Sigman, D. S., Kuwabara, M. D., Chen, C. B., and Bruice, T. W. (1991) Methods Enzymol. 208, 414-433
41. Wissmann, A., and Hillen, W. (1991) Methods Enzymol. 208, 365-379
42. Tullius, T. D., Dombroski, B. A., Churchill, M. E. A., and Kam, L. (1987) Methods Enzymol. 155, 537-558
43. Dixon, W. J., Hayes, J. J., Levin, J. R., Weidner, M. F., Dombroski, B. A., and Tullius, T. D. (1991) Methods Enzymol. 208, 380-413
44. Price, M. A., and Tullius, T. D. (1992) Methods Enzymol. 212, 194-219
45. Mack, A., Sauer, B., Abremski, K., and Hoess, R. (1992) Nucleic Acids Res. 20, 4451-4455
46. Crothers, D. M., and Drak, J. (1992) Methods Enzymol. 212, 46-71
47. Wu, H. M., and Crothers, D. M. (1984) Nature 308, 509-513
48. Kerppola, T. K., and Curran, T. (1991) Science 254, 1210-1214
49. Luetke, K. H., and Sadowski, P. D. (1998) Nucleic Acids Res. 26, 1401-1407
50. Ringrose, L., Lounnas, V., Ehrlich; L., Buchholz, F., Wade, R., and Stewart, A. F. (1998) J. Mol. Biol. 284, 363-384
51. Hagerman, P. J. (1992) Biochim. Biophys. Acta 1131, 125-132