Exploring plant-microbe interactions using DNA microarrays

New Phytologist

Volumn 158, Issue 2, 2003, Pages 235-238

  Tunlid, Anders ^a  

^a LUND UNIVERSITY   (Sweden)

Author keywords

DNA arrays; Functional genomics; Microarrays; Mycorrhizas; Plant microbe interactions

Indexed keywords

DNA; INTERSPECIFIC INTERACTION; MICROORGANISM; MYCORRHIZA;

FUNGI;

EID: 0038644576     PISSN: 0028646X     EISSN: None     Source Type: Journal    
DOI: 10.1046/j.1469-8137.2003.00750.x     Document Type: Conference Paper

References (17)

1. Brazma A, Hingamp P, Quackenbush J, Sherlock G, Spellman P, Stoeckert C, Aach J, Ansorge W, Ball CA, Causton HC, Gaasterland T, Glenisson P, Holstege FC, Kim IF, Markowitz V, Matese JC, Parkinson H, Robinson A, Sarkans U, Schulze-Kremer S, Stewart J, Taylor R, Vilo J, Vingron M. 2001. Minimum information about microarray experiment (MIAME) - toward standards for microarray data. Nature Genetics 29: 365-373.
2. Brown PO, Botstein D. 1999. Exploring the new world of the genome with DNA microarrays. Nature Genetics 21: 33-37.
3. Chervitz SA, Aravind L, Sherlock G, Ball CA, Koonin EV, Dwight SS, Harris MA, Dolinski K, Mohr S, Smith T, Weng S, Cherry JM, Botstein D. 1998. Comparison of the complete protein sets of worm and yeast: orthology and divergence. Science 282: 2022-2028.
4. Colebatch G, Kloska S, Trevaskis B, Freund S, Altmann T, Udvardi MK. 2002. Novel aspects of symbiotic nitrogen fixation uncovered by transcript profiling with cDNA arrays. Molecular Plant-Microbe Interactions 15: 411-420.
5. Colebatch G, Trevaskis B, Poyser SJ. 2002a. Functional genomics: tools of the trade. New Phytologist 153: 27-36.
6. Colebatch G, Trevaskis B, Poyser SJ. 2002b. Symbiotic nitrogen fixation in the postgenomics era. New Phytologist 153: 37-42.
7. Finkelstein D, Ewing R, Gollub J, Sterky F, Cherry JM, Somerville S. 2002. Microarray data quality analysis: lessons from the AFGC project. Plant Molecular Biology 48: 119-131.
8. Franken P, Requena N. 2001. Analysis of gene expression in arbuscular mycorthizas: new approaches and challenges. New Phytologist 150: 517-523.
9. Maleck K, Levine A, Eulgem T, Morgan A, Schmid J, Lawton KA, Dangl JL, Dietrich RA. 2000. The transcriptome of Arabidopsis thaliana during systemic acquired resistance. Nature Genetics 26: 403-410.
10. Martin F. 2001. Frontiers in molecular mycorthizal research - genes, loci, dots and spins. New Phytologist 150: 499-507.
11. Oliver SG. 2002. Functional genomics: lessons from yeast. Philosophical Transactions of the Royal Society of London B357: 17-23.
12. Scheideler M, Schlaich NL, Fellenberg K, Beissbarth T, Hanser NC, Vingron M, Slusarenko AJ, Hoheisel JD. 2002. Monitoring the switch from housekeeping to pathogen defense metabolism in Arabidopsis thaliana using cDNA arrays. Journal of Biological Chemistry 277: 10555-10561.
13. Schenk PM, Kazan K, Wilson I, Anderson JP, Richmond T, Somerville SC, Manners JM. 2000. Coordinated plant defense responses in Arabidopsis revealed by microarray analysis. Proceedings of the National Academy of Sciences, USA 97: 11655-11660.
14. Sprent J. 2002. Knobs, knots and nodules - the renaissance in legume symbiosis research. New Phytologist 153: 2-6.
15. Tunlid A, Talbot NJ. 2002. Genomics of parasitic and symbiotic fungi. Current Opinion in Microbiology 5: 513-519.
16. Voiblet C, Duplessis S, Encelot N, Martin F. 2001. Identification of symbiosis-regulated genes in Eucalyptus globulus - Pisolithus tinctorius ectomycorrhiza by differential hybridisation of arrayed cDNAs. Plant Journal 25: 181-191.
17. Yang YH, Speed T. 2002. Design issues for cDNA microarray experiments. Nature Reviews Genetics 3: 579-588.