Population-genetic models of the fates of duplicate genes

Genetica

Volumn 118, Issue 2-3, 2003, Pages 279-294

  Walsh, Bruce ^a  

^a UNIVERSITY OF ARIZONA   (United States)

Author keywords

Evolution of new gene function; Gene families; Gene silencing; Neofunctionalization; Pseudogenes; Subfunctionalization

Indexed keywords

BIOLOGICAL MODEL; DUPLICATE GENE; GENE SILENCING; GENETIC DRIFT; GENETIC SELECTION; MOLECULAR EVOLUTION; MUTATION; POPULATION GENETICS; PSEUDOGENE; REVIEW;

EVOLUTION, MOLECULAR; GENE SILENCING; GENES, DUPLICATE; GENETIC DRIFT; GENETICS, POPULATION; MODELS, GENETIC; MUTATION; PSEUDOGENES; SELECTION (GENETICS);

EID: 0038644195     PISSN: 00166707     EISSN: None     Source Type: Journal    
DOI: 10.1023/A:1024194802441     Document Type: Review

References (30)

1. Allenbdorf, F.W., 1979. Rapid loss of duplicate gene expression by natural selection. Heredity 43: 247-258.
2. Bailey, G.S., R.T.M. Poulter & P.A. Stockwell, 1978. Gene duplication in teraploid fish: model for gene silencing at unlinked duplicate loci. Proc. Natl. Acad. Sci. USA 75: 5575-5579.
3. Christansen, F.B. & O. Frydenberg, 1977. Selection-mutation balance for two nonallelic recessives producing an inferior double homozygote. Am. J. Hum. Gene. 29: 195-207.
4. Clark, A.G., 1994. Invasion and maintenance of a gene duplication. Proc. Natl. Acad. Sci. USA 91: 2950-2954.
5. Ferris, S.D. & G.S. Whitt, 1977. Loss of duplicate gene expression after polyplodisation. Nature 265: 258-260.
6. Ferris, S.D. & G.S. Whitt, 1979. Evolution of differential regulation of duplicate genes after polyplodization. J. Mol. Evol. 12: 267-317.
7. Ferris, S.D., S.L. Portnoy & G.S. Whitt, 1979. The roles of speciation and divergence time in the loss of duplicate gene expression. Theoret. Pop. Biol. 15: 114-139.
8. Fisher, R.A., 1935. The sheltering of lethals. Am. Nat. 69: 446-455.
9. Force, A., M. Lynch, F.B. Pickett, A. Amores, Y. Yan & J. Postlethwait, 1999. Preservation of duplicate gnees by complementary, degenerative mutations. Genetics 151: 1531-1545.
10. Haldane, J.B.S., 1933. The part played by recurrent mutation in evolution. Am. Nat. 67: 5-19.
11. Hughes, M.K. & A.L. Hughes, 1993. Evolution of duplicate genes in a tetraploid animal, Xenopus laevis. Mol. Biol. Evol. 10: 1360-1369.
12. Kimura, M. & J.L. King, 1979. Fixation of a deleterious allele at one of two 'duplicate' loci by mutation pressure and random drift. Proc. Natl. Acad. Sci. USA 76: 2858-2861.
13. Li, W.-H., 1980. Rate of gene silencing at duplicate loci: a theoretical study and interpretation of data from tetraploid fishes. Genetics 95: 237-258.
14. Lynch, M. & A. Force, 2000. The origin of interspecific genomic incompatibility via gene duplication. Am. Nat. 156: 590-605.
15. Lynch, M. & A. Force, 2000a. The probability of duplicate gene preservation by subfunctionalization. Genetics 154: 459-473.
16. Lynch, M., M. O'Hely, B. Walsh & A. Force, 2001. The probability of preservation of a newly arisen gene duplicate. Genetics (in press).
17. Maruyama, T. & N. Takahata, 1981. Numerical studies of the frequency trajectories in the process of fixation of null genes at duplicate loci. Heredity 46: 49-57.
18. Nei, M., 1970. Accumulation of nonfunctional genes on sheltered chromosomes. Am. Nat. 104: 311-322.
19. Nei, M. & A.K. Roychoudhury, 1973. Probability of fixation of nonfunctional genes at duplicate loci. Am. Nat. 107: 362-371.
20. Ohno, S., 1970. Evolution by Gene Duplication. Springer, Heidelberg, Germany.
21. Ohta, T., 1980. Evolution and Variation in Multigene Families. Springer, New York.
22. Ohta, T., 1983. On the evolution of multigene families. Theoret. Pop. Biol. 23: 216-240.
23. Ohta, T., 1987. Simulating evolution by gene duplication. Genetics 115: 207-213.
24. Partridge, C.W.H. & N.H. Giles, 1963. Sedimentation behavior of adenylo-succinase formed by interallelic complementation in Neurospora crass. Nature 199: 304-305.
25. Spofford, J.B., 1969. Heterosis and the evolution of duplications. Am. Nat. 103: 407-432.
26. Takahata, N. & T. Mamyama, 1979. Polymorphism and loss of duplicate gene expression: a theoretical study with application to tetraploid fish. Proc. Natl. Acad. Sci. USA 76: 4521-4525.
27. Walsh, J.B., 1985. How many processed pseudogenes are accumulated in a gene family? Genetics 110: 345-364.
28. Walsh, J.B., 1987. Sequence-dependent gene conversion: can duplicated genes diverge fast enough to escape conversion? Genetics 117: 543-557.
29. Walsh, J.B., 1995. How often do duplicated genes evolve new functions? Genetics 139: 421-428.
30. Watterson, G.A., 1983. On the time for gene silencing at duplicate loci. Genetics 105: 745-766.