The structure of the zinc finger domain from human splicing factor ZNF265 fold

Journal of Biological Chemistry

Volumn 278, Issue 25, 2003, Pages 22805-22811

  Plambeck, Craig A ^c   Kwan, Ann H Y ^c   Adams, David J ^b   Westman, Belinda J ^c   Van der Weyden, Louise ^b   Medcalf, Robert L ^a   Morris, Brian J ^c   Mackay, Joel P ^c  

^a MONASH UNIVERSITY   (Australia)

^b WELLCOME TRUST SANGER INSTITUTE   (United Kingdom)

^c NONE

Author keywords

[No Author keywords available]

Indexed keywords

BIOCHEMISTRY; CHEMICAL BONDS; CONFORMATIONS; MOLECULAR STRUCTURE; RNA; ZINC;

SOLUTION STRUCTURE;

PROTEINS;

AMINO ACID; CYSTEINE; PROTEIN U1 70K; PROTEIN U2AF35; PROTEIN ZNF265; REGULATOR PROTEIN; RNA; RNA BINDING PROTEIN; UNCLASSIFIED DRUG; ZINC ION;

ALTERNATIVE RNA SPLICING; AMINO ACID SEQUENCE; ARTICLE; BETA SHEET; MOLECULAR RECOGNITION; PRIORITY JOURNAL; PROTEIN CONFORMATION; PROTEIN EXPRESSION; PROTEIN FUNCTION; PROTEIN MOTIF; PROTEIN RNA BINDING; PROTEIN STRUCTURE; SEQUENCE ANALYSIS; SPLICEOSOME; STRUCTURE ANALYSIS; ZINC FINGER MOTIF;

EID: 0038604103     PISSN: 00219258     EISSN: None     Source Type: Journal    
DOI: 10.1074/jbc.M301896200     Document Type: Article

References (68)

1. Krishna, S. S., Majumdar, I., and Grishin, N. V. (2003) Nucleic Acids Res. 31, 532-550
2. Foster, M. P., Wuttke, D. S., Radhakrishnan, I., Case, D. A., Gottesfeld, J. M., and Wright, P. E. (1997) Nat. Struct. Biol. 4, 605-608
3. Wuttke, D. S., Foster, M. P., Case, D. A., Gottesfeld, J. M., and Wright, P. E. (1997) J. Mol. Biol. 273, 183-206
4. Searles, M. A., Lu, D., and Klug, A. (2000) J. Mol. Biol. 301, 47-60
5. Draper, D. E. (1999) J. Mol. Biol. 293, 255-270
6. Battiste, J. L., Tan, R., Frankel, A. D., and Williamson, J. R. (1994) Biochemistry 33, 2741-2747
7. Tan, R., and Frankel, A. D. (1994) Biochemistry 33, 14579-14585
8. Chen, L., and Frankel, A. D. (1994) Biochemistry 33, 2708-2715
9. Puglisi, J. D., Chen, L., Blanchard, S., and Frankel, A. D. (1995) Science 270, 1200-1203
10. Markus, M. A., Hinck, A. P., Huang, S., Draper, D. E., and Torchia, D. A. (1997) Nat. Struct. Biol. 4, 70-77
11. Nakano, M., Yoshiura, K., Oikawa, M., Miyoshi, O., Yamada, K., Kondo, S., Miwa, N., Soeda, E., Jinno, Y., Fujii, T., and Niikawa, N. (1998) Gene (Amst.) 225, 59-65
12. Adams, D. J., van der Weyden, L., Mayeda, A., Stamm, S., Morris, B. J., and Rasko, J. E. (2001) J. Cell Biol. 154, 25-32
13. Adams, D. J., van der Weyden, L., Kovacic, A., Lovicu, F. J., Copeland, N. G., Gilbert, D. J., Jenkins, N. A., Ioannou, P. A., and Morris, B. J. (2000) Cytogenet. Cell Genet. 88, 68-73
14. Karginova, E. A., Pentz, E. S., Kazakova, I. G., Norwood, V. F., Carey, R. M., and Gomez, R. A. (1997) Am. J. Physiol. 273, F731-F738
15. Ladomery, M., Marshall, R., Arif, L., and Sommerville, J. (2000) Gene (Amst.) 256, 293-302
16. Momand, J., Zambetti, G. P., Olson, D. C., George, D., and Levine, A. J. (1992) Cell 69, 1237-1245
17. Honda, R., Tanaka, H., and Yasuda, H. (1997) FEBS Lett. 420, 25-27
18. Yokoyama, N., Hayashi, N., Seki, T., Pante, N., Ohba, T., Nishii, K., Kuma, K., Hayashida, T., Miyata, T., Aebi, U., Fukui, M., and Nishimoto, T. (1995) Nature 376, 184-188
19. Pichler, A., Gast, A., Seeler, J. S., Dejean, A., and Melchior, F. (2002) Cell 108, 109-120
20. May, W. A., Gishizky, M. L., Lessnick, S. L., Lunsford, L. B., Lewis, B. C., Delattre, O., Zucman, J., Thomas, G., and Denny, C. T. (1993) Proc. Natl. Acad. Sci. U. S. A. 90, 5752-5756
21. Singh, B. B., Patel, H. H., Roepman, R., Schick, D., and Ferreira, P. A. (1999) J. Biol. Chem. 274, 37370-37378
22. Johnson, M. L., Correia, J. J., Yphantis, D. A., and Halvorson, H. R. (1981) Biophys J. 36, 575-588
23. Perkins, S. J. (1986) Eur. J. Biochem. 157, 169-180
24. Hayes, D. B., Laue, T., and Philo, J. (1994) SEDNTERP: Interpretation of Sedimentation Data, Version 1.X, Boston Biomedical Research Institute, Boston, MA
25. Piotto, M., Saudek, V., and Sklenar, V. (1992) J. Biomol. NMR 2, 661-665
26. Piantini, U., Sorensen, O. W., and Ernst, R. R. (1982) J. Am. Chem. Soc. 104, 6800-6801
27. Bax, A., and Davis, D. G. (1985) J. Magn. Reson. 65, 355-360
28. Kumar, A., Ernst, R. R., and Wüthrich, K. (1980) Biochem. Biophys. Res. Commun. 95, 1-6
29. Bartels, C., Xia, T.-H., Billeter, P., Guntert, P., and Wuthrich, K. (1995) J. Biomol. NMR 5, 1-10
30. Guntert, P., Mumenthaler, C., and Wuthrich, K. (1997) J. Mol. Biol. 273, 283-298
31. Szyperski, T., Guntert, P., Otting, G., and Wuthrich, K. (1992) J. Magn. Reson. 99, 552-560
32. Scanlon, M. J., Naranjo, D., Thomas, L., Alewood, P. F., Lewis, R. J., and Craik, D. J. (1997) Structure 5, 1585-1597
33. Kline, A. D., Braun, W., and Wuthrich, K. (1988) J. Mol. Biol. 204, 675-724
34. Wuthrich, K. (1986) NMR of Proteins and Nucleic Acids, Wiley, New York
35. Neuhaus, D., Nakaseko, Y., Schwabe, J. W., and Klug, A. (1992) J. Mol. Biol. 228, 637-651
36. Brunger, A. T., Adams, P. D., Clore, G. M., DeLano, W. L., Gros, P., Grosse-Kunstleve, R. W., Jiang, J. S., Kuszewski, J., Nilges, M., Pannu, N. S., Read, R. J., Rice, L. M., Simonson, T., and Warren, G. L. (1998) Acta Crystallogr. Sect. D 54, 905-921
37. Nilges, M., Macias, M. J., O'Donoghue, S. I., and Oschkinat, H. (1997) J. Mol. Biol. 269, 408-422
38. Nilges, M. (1997) Fold Des. 2, S53-57
39. Linge, J. P., and Nilges, M. (1999) J. Biomol. NMR 13, 51-59
40. Folmer, R. H., Hilbers, C. W., Konings, R. N., and Nilges, M. (1997) J. Biomol. NMR 9, 245-258
41. Jorgensen, W. L., Chandrasekhar, J., Madura, J., Impey, R., and Klein, M. (1983) J. Chem. Phys. 79, 926-935
42. Koradi, R., Billeter, M., and Wuthrich, K. (1996) J. Mol. Graph. 14, 29-32; 51-55
43. Laskowski, R. A., Rullmannn, J. A., MacArthur, M. W., Kaptein, R., and Thornton, J. M. (1996) J. Biomol. NMR 8, 477-486
44. Vriend, G., and Sander, C. (1993) J. Appl. Crystallogr. 26, 47-60
45. Maurer, F., Tierney, M., and Medcalf, R. L. (1999) Nucleic Acids Res. 27, 1664-1673
46. Delaney, S. J., Hayward, D. C., Barleben, F., Fischbach, K. F., and Miklos, G. L. (1991) Proc. Natl. Acad. Sci. U. S. A. 88, 7214-7218
47. Perez-Canadillas, J. M., and Varani, G. (2001) Curr. Opin. Struct. Biol. 11, 53-58
48. Graveley, B. R., and Maniatis, T. (1998) Mol. Cell 1, 765-771
49. Schwabe, J. W., and Klug, A. (1994) Nat. Struct. Biol. 1, 345-349
50. Hutchinson, E. G., and Thornton, J. M. (1994) Protein Sci. 3, 2207-2216
51. Kabsch, W., and Sander, C. (1983) Biopolymers 22, 2577-2637
52. Holm, L., and Sander, C. (1997) Nucleic Acids Res. 25, 231-234
53. Nanduri, S., Carpick, B. W., Yang, Y., Williams, B. R., and Qin, J. (1998) EMBO J. 17, 5458-5465
54. Patel, R. C., Stanton, P., and Sen, G. C. (1996) J. Biol. Chem. 271, 25657-25663
55. Clarke, P. A., and Mathews, M. B. (1995) RNA 1, 7-20
56. McMillan, N. A., Carpick, B. W., Hollis, B., Toone, W. M., Zamanian-Daryoush, M., and Williams, B. R. (1995) J. Biol. Chem. 270, 2601-2606
57. De Guzman, R. N., Wu, Z. R., Stalling, C. C., Pappalardo, L., Borer, P. N., and Summers, M. F. (1998) Science 279, 384-388
58. Theunissen, O., Rudt, F., Guddat, U., Mentzel, H., and Pieler, T. (1992) Cell 71, 679-690
59. Bogden, C. E., Fass, D., Bergman, N., Nichols, M. D., and Berger, J. M. (1999) Mol. Cell 3, 487-493
60. Hall, K. B. (2002) Curr. Opin. Struct. Biol. 12, 283-288
61. Meagher, M. J., Schumacher, J. M., Lee, K., Holdcraft, R. W., Edelhoff, S., Disteche, C., and Braun, R. E. (1999) Gene (Amst.) 228, 197-211
62. Reuter, G., Giarre, M., Farah, J., Gausz, J., Spierer, A., and Spierer, P. (1990) Nature 344, 219-223
63. Fasano, L., Roder, L., Core, N., Alexandre, E., Vola, C., Jacq, B., and Kerridge, S. (1991) Cell 64, 63-79
64. Manley, J. L., and Tacke, R. (1996) Genes Dev. 10, 1569-1579
65. Fu, X. D. (1995) RNA 1, 663-680
66. Varani, G., and Nagai, K. (1998) Annu. Rev. Biophys. Biomol. Struct. 27, 407-445
67. Wu, J., Matunis, M. J., Kraemer, D., Blobel, G., and Coutavas, E. (1995) J. Biol. Chem. 270, 14209-14213
68. Mackay, J. P., and Crossley, M. (1998) Trends Biochem. Sci 265, 1-4