Regulation of activity of the yeast TATA-binding protein through intra-molecular interactions

Journal of Biosciences

Volumn 28, Issue 4, 2003, Pages 413-421

  Vanathi, Perumal ^a   Mishra, Anurag Kumar ^a   Bhargava, Purnima ^a  

^a CENTRE FOR CELLULAR AND MOLECULAR BIOLOGY   (India)

Author keywords

Chemical cross linking; Dimerization; Gene regulation; TBP; Transcription; Yeast

Indexed keywords

DIMER; MAGNESIUM ION; MONOMER; SODIUM CHLORIDE; TATA BINDING PROTEIN;

PROTEIN; YEAST;

AMINO TERMINAL SEQUENCE; ARTICLE; CARBOXY TERMINAL SEQUENCE; COMPLEX FORMATION; CONCENTRATION RESPONSE; CONFORMATION; CROSS LINKING; DIMERIZATION; GEL FILTRATION; MOLECULAR INTERACTION; MOLECULAR WEIGHT; PROTEIN DOMAIN; REGULATORY MECHANISM; TATA BOX;

EID: 0038548617     PISSN: 02505991     EISSN: None     Source Type: Journal    
DOI: 10.1007/BF02705116     Document Type: Article

References (35)

1. Bell B and Tora L 1999 Regulation of gene expression by multiple forms of TFIID and other novel TFIID complexes; Exp. Cell. Res. 246 11-19
2. Buratowski S, Hahn S, Sharp P A and Guarente L 1988 Function of a yeast TATA element binding protein in a mammalian transcription system; Nature (London) 334 37-42
3. Burley S K and Roeder R G 1996 Biochemistry and structural biology of transcription factor IID (TFIID); Annu. Rev. Biochem. 65 769-799
4. Campbell K M, Ranallo R T, Stargell L A and Lumb K J 2000 Reevaluation of transcriptional regulation by TATA-Binding protein oligomerization: Predominance of monomers; Biochemistry 39 2633-2638
5. Chasman D I, Flaherty K M, Sharp P A and Kornberg R D 1993 Crystal structure of yeast TATA-binding protein and model for interaction with DNA; Proc. Natl. Acad. Sci. USA 90 8174-8178
6. Coleman R A, Taggart A K P, Benjamin L R and Pugh B F 1995 Dimerization of the TATA Binding Protein; J. Biol. Chem. 270 13842-13849
7. Coleman R A and Pugh B F 1997 Slow dimer dissociation of TATA binding protein dictates the kinetics of DNA binding; Proc. Natl. Acad. Sci. USA 94 7221-7226
8. Coleman R A, Taggart A K P, Burma S, Chicca II J J and Pugh B F 1999 TFIIA regulates TBP and TFIID dimers; Mol. Cell 4 451-457
9. Daugherty M A, Brenowitz M and Fried G 1999 The TATA binding protein from Saccharomyces cerevisiae oligomerizes in solution at micromolar concentrations to form tetramers and octamers; J. Mol. Biol. 285 1389-1399
10. Daugherty M A, Brenowitz M and Fried G 2000 Participation of the amino-terminal domain in the self-association of the full-length yeast TATA binding protein; Biochemistry 39 4869-4880
11. Goffeau A, Barrell B G, Bussey H, Davis R W, Dujon B, Feldmann H, Galibert F, Hoheisel J D, Jacq C, Johnston M, Louis E J, Mewes H W, Murakami Y, Philippsen P, Tettelin H and Oliver G G 1996 Life with 6000 genes; Science 274 546, 563-567
12. Hernandez N 1993 TBP, a universal transcription factor?; Genes Dev. 7 1291-1308
13. Horikoshi M, Yamamoto T, Ohkuma Y, Weil P A and Roeder R G 1990 Analysis of structure-function relationship of yeast TATA box binding factor TFIID; Cell 61 1171-1178
14. Icard-Liepkalns C 1993 Binding activity of the human transcription factor TFIID; Biochem. Biophys. Res. Commun. 193 453-459
15. Imbalzano A N, Zaret K S and Kingston R E 1994 Transcription factor (TF) IIB and TFIIA can independently increase the affinity of the TATA-binding protein for DNA; J. Biol. Chem. 269 8280-8286
16. Jackson-Fisher A J, Burma S, Portnoy M, Schneeweis L A, Coleman R A, Mitra M, Chitikila C and Pugh B F 1999a Dimer dissociation and thermosensitivity kinetics of the Saccharomyces cerevisiae and human TATA Binding Proteins; Biochemistry 38 11340-11348
17. Jackson-Fisher A J, Chitikila C, Mitra M and Pugh B F 1999b A role for TBP dimerization in preventing unregulated gene expression; Mol. Cell 3 717-727
18. Jupp R, Flores O, Nelson J A and Ghazel P 1993 The DNA binding subunit of human transcription factor IID can interact with the TATA box as a multimer; J. Biol. Chem. 268 16105-16108
19. Kato K, Makino Y, Kishimoto T, Yamauchi J, Kato S, Muramatsu M and Tamura T 1994 Multimerization of the mouse TATA-binding protein (TBP) driven by its C-terminal conserved domain; Nucleic Acids Res. 22 1179-1185
20. Kuddus R and Schmitz M C 1993 Effect of the non-conserved N-terminus on the DNA binding activity of the yeast TATA binding protein; Nucleic Acids Res. 21 1789-1796
21. Lee T I and Young R A 1998 Regulation of gene expression by TBP-associated proteins; Genes Dev. 12 1398-1408
22. Lescure A, Lutz Y, Eberhard D, Jacq X, Krol A, Grummt I, Davidson I, Chambon P and Tora L 1994 The N-terminal domain of the human TATA-binding protein plays a role in transcription from TATA-containing RNA polymerase II and III promoters; EMBO J. 13 1166-1175
23. Lieberman P M, Schmidt M C, Kao C C and Berk A J 1991 Two distinct domains in the yeast transcription factor IID and evidence for a TATA Box induced conformational change; Mol. Cell. Biol. 11 63-74
24. Glu revealed by chemical probing; Nucleic Acids Res. 27 3583-3588
25. Miaskeiwicz K and Ornstein R L 1996 DNA binding by TATA-box binding protein (TBP): A molecular dynamics computational study; J. Biomol. Struct. Dynam. 13 593-600
26. Nikolov D B, Hu S, Lin J, Gasch A, Hoffmann A, Horikoshi M, Chua N, Roeder R G and Burley S K 1992 Crystal structure of TFIID TATA-box binding protein; Nature (London) 360 40-46
27. Nikolov D B, Chen H, Halay E D, Hoffman A, Roeder R G and Burley S K 1996 Crystal structure of human TATA box binding protein/TATA element complex; Proc. Natl. Acad. Sci. USA 93 4862-4867
28. Perez-Howard G M, Weil P A and Beechem J M 1995 Yeast TATA binding protein interaction with DNA: fluorescence determination of oligomeric state, equilibrium binding, on-rate, and dissociation kinetics; Biochemistry 34 8005-8017
29. Petri V, Hsieh M and Brenowitz M 1995 Thermodynamic and kinetic characterization of the binding of the TATA Binding Protein to the Adenovirus E4 promoter; Biochemistry 34 9977-9984
30. Record M T, deHaseth P L and Lohman T M 1977 Interpretation of monovalent and divalent cation effects on the lac repressor-operator interaction; Biochemistry 16 4791-4796
31. Rigby P W J 1993 Three in one and one in three: It all depends on TBP; Cell 72 7-10
32. Taggart A K P and Pugh B F 1996 Dimerization of TFIID when not bound to DNA; Science 272 1331-1333
33. Wong J M and Bateman E 1994 TBP-DNA interactions in the minor groove discriminate between A:T and T:A base pairs; Nucleic Acids Res. 22 1890-1896
34. Zhao X and Herr W 2002 A regulated Two-step mechanism of TBP binding to DNA: A solvent-exposed surface of TBP inhibits TATA box recognition; Cell 108 615-627
35. Zerby D and Lieberman P M 1997 Functional analysis of TFIID-activator interaction by magnesium-agarose gel electrophoresis; Methods 12 217-223