Saccharospirillum impatiens gen. nov., sp. nov., a novel γ-Proteobacterium isolated from hypersaline Ekho Lake (East Antarctica)

International Journal of Systematic and Evolutionary Microbiology

Volumn 53, Issue 3, 2003, Pages 653-660

  Labrenz, Matthias ^a   Lawson, Paul A ^b   Tindall, Brian J ^c   Collins, Matthew D ^b   Hirsch, Peter ^a  

^a UNIVERSITY OF KIEL   (Germany)

^b UNIVERSITY OF READING   (United Kingdom)

^c LEIBNIZ INSTITUTE DSMZ GERMAN COLLECTION OF MICROORGANISMS AND CELL CULTURES   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

CARBOXYLIC ACID; CARDIOLIPIN; CATALASE; CYSTEINE; DNA BASE; FATTY ACID; GLYCINE; LIPID; METHYLAMINE; OXIDOREDUCTASE; PHOSPHATIDYLGLYCEROL; RNA 16S; SODIUM CHLORIDE; SODIUM ION; SUGAR;

AEROBIC BACTERIUM; ANTARCTICA; ARTICLE; BACTERIAL STRAIN; BACTERIUM ISOLATION; CONTROLLED STUDY; DNA BASE COMPOSITION; DNA CONTENT; GENE SEQUENCE; GENETIC VARIABILITY; GRAM NEGATIVE BACTERIUM; LAKE; MICROBIAL MORPHOLOGY; NEW GENUS; NEW SPECIES; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; SACCHAROSPIRILLUM IMPATIENS;

ANTARCTIC REGIONS; BACTERIAL TYPING TECHNIQUES; BASE COMPOSITION; DNA, RIBOSOMAL; FATTY ACIDS; GAMMAPROTEOBACTERIA; GENES, RRNA; MOLECULAR SEQUENCE DATA; PHYLOGENY; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SODIUM CHLORIDE; WATER MICROBIOLOGY;

BACTERIA (MICROORGANISMS); CHROMOHALOBACTER; GAMMAPROTEOBACTERIA; HALOMONAS; IMPATIENS; MARINOSPIRILLUM; NEGIBACTERIA; OCEANOSPIRILLUM; PROKARYOTA; PROTEOBACTERIA; PSEUDOSPIRILLUM; SACCHAROSPIRILLUM IMPATIENS; UNCULTURED GAMMA PROTEOBACTERIUM;

EID: 0038547875     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.02406-0     Document Type: Article

References (37)

1. Arahal, D. R., Ludwig, W., Schleifer, K. H. & Ventosa, A. (2002). Phylogeny of the family Halomonadaceae based on 23S and 16S rDNA sequence analyses. Int J Syst Evol Microbiol 52, 241-249.
2. Collins, M. D., Lawson, P. A., Labrenz, M., Tindall, B. J., Weiss, N. & Hirsch, P. (2002). Nesterenkonia lacusekhoensis sp. nov., isolated from hypersaline Ekho Lake, East Antarctica, and emended description of the genus Nesterenkonia. Int J Syst Evol Microbiol 52, 1145-1150.
3. Dobson, S. J. & Franzmann, P. D. (1996). Unification of the genera Deleya (Baumann et al. 1983), Halomonas (Vreeland et al. 1980), and Halovibrio (Fendrich 1988) and the species Paracoccus halodenitrificans (Robinson and Gibbons 1952) into a single genus, Halomonas, and placement of the genus Zymobacter in the family Halomonadaceae. Int J Syst Bacteriol 46, 550-558.
4. Franzmann, P. D. & Tindall, B. J. (1990). A chemotaxonomic study of members of the family Halomonadaceae. Syst Appl Microbiol 13, 142-147.
5. Franzmann, P. D., Wehmeyer, U. & Stackebrandt, E. (1988). Halomonadaceae fam. nov., a new family of the class Proteobacteria to accommodate the genera Halomonas and Deleya. Syst Appl Microbiol 11, 16-19.
6. Garriga, M., Ehrmann, M. A., Arnau, J., Hugas, M. & Vogel, R. F. (1998). Carnimonas nigrificans gen. nov., sp. nov., a bacterial causative agent for black spot formation on cured meat products. Int J Syst Bacteriol 48, 677-686.
7. Hamana, K., Sakane, T. & Yokota, A. (1994). Polyamine analysis of the genera Aquaspirillum, Magnetospirillum, Oceanospirillum, and Spirillum. J Gen Appl Microbiol 40, 75-82.
8. Holt, J. G., Krieg, N. R., Sneath, P. H. A., Staley, J. T. & Williams, S. T. (editors) (1994). Bergey's Manual of Determinative Bacteriology, 9th edn. Baltimore: Williams & Wilkins.
9. Hylemon, P. B., Wells, J. S. Jr, Krieg N. R. & Jannasch, H. W. (1973). The genus Spirillum: a taxonomic study. Int J Syst Bacteriol 23, 340-380.
10. James, S. R., Burton, H., McMeekin, T. A. & Mancuso, C. A. (1994). Seasonal abundance of Halomonas meridiana, Halomonas subglaciescola, Flavobacterium gondwanense and Flavobacterium salegens in four Antarctic lakes. Antarct Sci 6, 325-332.
11. Krieg, N. R. (1984). Aerobic/microaerophilic, motile, helical/vibroid Gram-negative bacteria. In Bergey's Manual of Systematic Bacteriology, vol. 1, pp. 104-110. Edited by N. R. Krieg & J. G. Holt. Baltimore: Williams & Wilkins.
12. Labrenz, M. & Hirsch, P. (2001). Physiological diversity and adaptations of aerobic heterotrophic bacteria from different depths of hypersaline, heliothermal and meromictic Ekho Lake (East Antarctica). Polar Biol 24, 320-327.
13. Labrenz, M., Collins, M. D., Lawson, P. A., Tindall, B. J., Braker, G. & Hirsch, P. (1998). Antarctobacter heliothermus gen. nov., sp. nov., a budding bacterium from hypersaline and heliothermal Ekho Lake. Int J Syst Bacteriol 48, 1363-1372.
14. Labrenz, M., Collins, M. D., Lawson, P. A., Tindall, B. J., Schumann, P. & Hirsch, P. (1999). Roseovarius tolerans gen. nov., sp. nov., a budding bacterium with variable bacteriochlorophyll a production from hypersaline Ekho Lake. Int J Syst Bacteriol 49, 137-147.
15. Labrenz, M., Tindall, B. J., Lawson, P. A., Collins, M. D., Schumann, P. & Hirsch, P. (2000). Staleya guttiformis gen. nov., sp. nov. and Sulfitobacter brevis sp. nov., α-3-Proteobacteria from hypersaline, heliothermal and meromictic antarctic Ekho Lake. Int J Syst Evol Microbiol 50, 303-313.
16. Lawson, P. A., Collins, M. D., Schumann, P., Tindall, B. J., Hirsch, P. & Labrenz, M. (2000). New LL-diaminopimelic acid-containing actinomycetes from hypersaline, heliothermal and meromictic Antarctic Ekho Lake: Nocardioides aquaticus sp. nov. and Friedmanniella lacustris sp. nov. Syst Appl Microbiol 23, 219-229.
17. Mesbah, M., Premachandran, U. & Whitman, W. B. (1989). Precise measurement of the G + C content of deoxyribonucleic acid by high-performance liquid chromatography. Int J Syst Bacteriol 39, 159-167.
18. Nicholas, K. B., Nicholas, H. B., Jr & Deerfield, D. W., II (1997). GeneDoc: analysis and visualization of genetic variation. EMBNEW.NEWS 4, 14.
19. Okamoto, T., Taguchi, H., Nakamura, K., Ikenaga, H., Kuraishi, H. & Yamasato, K. (1993). Zymobacter palmae gen. nov., sp. nov., a new ethanol-fermenting peritrichous bacterium isolated from sap. Arch Microbiol 160, 333-337.
20. Page, R. D. M. (1996). TreeView: an application to display phylogenetic trees on personal computers. Comput Appl Biosci 12, 357-358.
21. Pearson, W. & Lipman, D. (1988). Improved tools for biological sequence comparison. Proc Natl Acad Sci U S A 85, 2444-2448.
22. Perriss, S. J. & Laybourn-Parry, J. (1997). Microbial communities in saline lakes of the Vestfold Hills (eastern Antarctica). Polar Biol 18, 135-144.
23. Pfennig, N. & Wegener, S. (1986). An improved method of preparing wet mounts for photomicrographs of microorganisms. J Microbiol Methods 4, 303-306.
24. Pot, B., Gillis, M., Hoste, B., Van de Velde, A., Bekaert, F., Kersters, K. & De Ley, J. (1989). Intra- and intergeneric relationships of the genus Oceanospirillum. Int J Syst Bacteriol 39, 23-34.
25. Rasmussen, S. W. (1995). DNATools: a software package for DNA sequence analysis. Carlsberg Laboratory, Copenhagen.
26. Rhuland, L. E., Work, E., Denman, R. F. & Hoare, D. S. (1955). The behavior of the isomers of α, E-diaminopimelic acid on paper chromatograms. J Am Chem Soc 77, 4844-4846.
27. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
28. Sakane, T. & Yokota, A. (1994). Chemotaxonomic investigation of heterotrophic, aerobic and microaerophilic spirilla, the genera Aquaspirillum, Magnetospirillum, and Oceanospirillum. Syst Appl Microbiol 17, 128-134.
29. Sambrook, J., Fritsch, E. F. & Maniatis, T. (1989). Molecular Cloning: a Laboratory Manual, 2nd edn. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory.
30. Satomi, M., Kimura, B., Hayashi, M., Shouzen, Y., Okuzumi, M. & Fujii, T. (1998). Marinospirillum gen. nov., with descriptions of Marinospirillum megaterium sp. nov., isolated from kusaya gravy, and transfer of Oceanospirillum minutulum to Marinospirillum minutulum comb. nov. Int J Syst Bacteriol 48, 1341-1348.
31. Satomi, M., Kimura, B., Hamada, T., Harayama, S. & Fujii, T. (2002). Phylogenetic study of the genus Oceanospirillum based on 16S rRNA and gyrB genes: emended description of the genus Oceanospirillum, description of Pseudospirillum gen. nov., Oceanobacter gen. nov. and Terasakiella gen. nov. and transfer of Oceanospirillum jannaschii and Pseudomonas stanieri to Marinobacterium as Marinobacterium jannaschii comb. nov. and Marinobacterium stanieri comb. nov. Int J Syst Evol Microbiol 52, 739-747.
32. Spröer, C., Lang, E., Hobeck, P., Burghardt, J., Stackebrandt, E. & Tindall, B. J. (1998). Transfer of Pseudomonas nautica to Marinobacter hydrocarbonoclasticus. Int J Syst Bacteriol 48, 1445-1448.
33. Strunk, O. & Ludwig, W. (1995). ARB: a software environment for sequence data. Department of Microbiology, Technical University of Munich, Germany.
34. Tindall, B. J. (1990a). A comparative study of the lipid composition of Halobacterium saccharovorum from various sources. Syst Appl Microbiol 13, 128-130.
35. Tindall, B. J. (1990b). Lipid composition of Halobacterium lacusprofundi. FEMS Microbiol Lett 66, 199-202.
36. Ventosa, A., Gutierrez, M. C., Garcia, M. T. & Ruiz-Berraquero, F. (1989). Classification of "Chromobacterium marismortui" in a new genus, Chromohalobacter gen. nov., as Chromohalobacter marismortui comb. nov., nom. rev. Int J Syst Bacteriol 39, 382-386.
37. Wayne, L. G., Brenner, D. J., Colwell, R. R. & 9 other authors (1987). International Committee on Systematic Bacteriology. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 37, 463-464.