An empirical exploration of data quality in DNA-based population inventories

Molecular Ecology

Volumn 12, Issue 6, 2003, Pages 1375-1387

  Paetkau, D ^a  

^a WILDLIFE GENETICS INTERNATIONAL   (Canada)

Author keywords

Abundance; Bias; Error; Mark recapture; Microsatellite; Noninvasive

Indexed keywords

ANIMALS; DEMOGRAPHY; HAIR; MICROSATELLITE REPEATS; RESEARCH DESIGN; SAMPLE SIZE; SPECIMEN HANDLING; URSIDAE; VARIATION (GENETICS);

EID: 0038379004     PISSN: 09621083     EISSN: None     Source Type: Journal    
DOI: 10.1046/j.1365-294X.2003.01820.x     Document Type: Review

References (28)

1. Boulanger J, McLellan B (2001) Closure violation in DNA-based mark-recapture estimation of grizzly bear populations. Canadian Journal of Zoology, 79, 642-651.
2. Boulanger J, White GC, McLellan BN et al. (2003) A meta-analysis of grizzly bear DNA mark-recapture projects in British Columbia, Canada. Ursus, 13, 137-152.
3. n microsatellite markers. American Journal of Human Genetics, 52, 922-927.
4. Craighead L, Paetkau D, Reynolds HV, Vyse ER, Strobeck C (1995) Microsatellite analysis of paternity and reproduction in Arctic grizzly bears. Journal of Heredity, 86, 255-261.
5. Ernest HB, Penedo MCT, May B, Syvanen M, Boyce WM (2000) Molecular tracking of mountain lions in the Yosemite Valley region in California: genetic analysis using microsatellites and faecal DNA. Molecular Ecology, 9, 433-441.
6. Gagneux P, Boesch C, Woodruff DS (1997) Microsatellite scoring errors associated with noninvasive genotyping based on nuclear DNA amplified from shed hair. Molecular Ecology, 6, 861-868.
7. Goossens B, Waits LP, Taberlet P (1998) Plucked hair samples as a source of DNA: reliability of dinucleotide microsatellite genotyping. Molecular Ecology, 7, 1237-1241.
8. Kohn MH, York EC, Kamradt DA, Haught G, Sauvajot RM, Wayne RK (1999) Estimating population size by genotyping faeces. Proceedings of the Royal Society of London, Series B, 266, 657-663.
9. Lucchini V, Fabbri E, Marucco F, Ricci S, Biotani L, Randi E (2002) Noninvasive molecular tracking of colonizing wolf (Canis lupus) packs in the western Italian Alps. Molecular Ecology, 11, 857-868.
10. Miller C, Joyce P, Waits LP (2002) Assessing allelic dropout and genotype reliability using maximum likelihood. Genetics, 160, 357-366.
11. Mills LS, Citta JJ, Lair KP, Schwartz MK, Tallmon DA (2000) Estimating animal abundance using noninvasive DNA sampling: promise and pitfalls. Ecological Applications, 10, 283-294.
12. Morin PA, Chambers KE, Boesch C, Vigilant L (2001) Quantitative polymerase chain reaction analysis of DNA from noninvasive samples for accurate microsatellite genotyping of wild chimpanzees (Pan troglodytes verus). Molecular Ecology, 10, 1835-1844.
13. Mowat G, Paetkau D (2002) Estimating marten Martes americana population size using hair capture and genetic tagging. Wildlife Biology, 8, 201-209.
14. Mowat G, Strobeck C (2000) Estimating population size of grizzly bears using hair capture, DNA profiling, and mark-recapture analysis. Journal of Wildlife Management, 64, 183-193.
15. Paetkau D, Waits LP, Clarkson PL et al. (1998) Variation in genetic diversity across the range of North American brown bears. Conservation Biology, 12, 418-429.
16. Palsbøll PJ (1999) Genetic tagging: contemporary molecular ecology. Biological Journal of the Linnean Society, 68, 3-22.
17. Palsbøll PJ, Allen J, Bérubé M et al. (1997) Genetic tagging of humpback whales. Nature, 388, 767-769.
18. Poole KG, Mowat G, Fear DA (2001) DNA-based population estimate for grizzly bears Ursus arctos in northeastern British Columbia, Canada. Wildlife Biology, 7, 105-115.
19. Reed JZ, Tollit DJ, Thompson PM, Amos W (1997) Molecular scatology: the use of molecular genetic analysis to assign species, sex and individual identity to seal faeces. Molecular Ecology, 6, 225-234.
20. Seber GAF (1982) The Estimation of Animal Abundance. Charles Griffin, London.
21. Sloane MA, Sunnucks P, Alpers D, Beheregaray B, Taylor AC (2000) Highly reliable genetic identification of individual northern hairy-nosed wombats from single remotely collected hairs: a feasible censusing methods. Molecular Ecology, 9, 1233-1240.
22. Stokstad E (2002) Fur flies over charges of misconduct. Science, 295, 250-251.
23. Taberlet P, Camarra J-J, Griffin S et al. (1997) Noninvasive genetic tracking of the endangered Pyrenean brown bear population. Molecular Ecology, 6, 869-876.
24. Taberlet P, Griffin S, Goossens B et al. (1996) Reliable genotyping of samples with very low DNA quantities using PCR. Nucleic Acids Research, 24, 3189-3194.
25. Taberlet P, Waits LP, Luikart G (1999) Noninvasive genetic sampling: look before you leap. Trends in Ecology and Evolution, 14, 323-327.
26. Wahlund S (1928) Zusammensetzung von populationen und korrelationserscheinungen vom standpunkt der vererbungslehre aus betrachtet. Hereditas, 11, 65-106.
27. Waits LP, Luikart G, Taberlet P (2001) Estimating the probability of identity among genotypes in natural populations: cautions and guidelines. Molecular Ecology, 10, 249-256.
28. Woods JC, Paetkau D, Lewis D et al. (1999) Genetic tagging of free-ranging black and brown bears. Wildlife Society Bulletin, 27, 616-627.