Phylogenetic affiliation of Aeromonas culicicola MTCC 3249T based on gyrB gene sequence and PCR-amplicon sequence analysis of cytolytic enterotoxin gene

Systematic and Applied Microbiology

Volumn 26, Issue 2, 2003, Pages 197-202

  Pidiyar, Vyankatesh J ^a   Jangid, Kamlesh ^a   Dayananda, K M ^a   Kaznowski, Adam ^b   Gonzalez, Jose M ^c   Patole, Milind S ^a   Shouche, Yogesh S ^a  

^a NATIONAL CENTRE FOR CELL SCIENCE   (India)

^b ADAM MICKIEWICZ UNIVERSITY   (Poland)

^c UNIVERSIDAD DE LA LAGUNA   (Spain)

Author keywords

Aeromonas; Cytolytic enterotoxin; DNA sequence; gyrB gene; Phylogeny; Taxonomy

Indexed keywords

RIBOSOME RNA;

AEROMONAS; AEROMONAS CULICICOLA; AEROMONAS VERONII; AMPLICON; ANIMAL CELL; ARTICLE; CHRONOBIOLOGY; CORRELATION COEFFICIENT; CULEX QUINQUEFASCIATUS; CYTOLYSIS; DNA HYBRIDIZATION; ENTEROTOXIN GENE; EVOLUTION; GENE SEQUENCE; GYRB GENE; INTERMETHOD COMPARISON; MARKER GENE; MIDGUT; NONHUMAN; NUCLEOTIDE SEQUENCE; PATHOGENICITY; PHYLOGENETIC TREE; PHYLOGENY; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; SEQUENCE ANALYSIS; STRAIN DIFFERENCE; STRAIN IDENTIFICATION;

AEROMONAS; AEROMONAS CULICICOLA; AEROMONAS JANDAEI; AEROMONAS VERONII; ANIMALIA; CULEX PIPIENS QUINQUEFASCIATUS; NEGIBACTERIA; PROKARYOTA;

EID: 0038343010     PISSN: 07232020     EISSN: None     Source Type: Journal    
DOI: 10.1078/072320203322346047     Document Type: Article

References (30)

1. Altwegg, M., Geiss, H. K.: Aeromonas as a human pathogen. CRC Crit. Rev. Microbiol. 16, 253-286 (1989).
2. Austin, B.: Fish pathogenic aeromonads, with emphasis on the ecology of Aeromonas salmonicida. Experientia. 43, 358-359 (1987).
3. Caccone, A., Desalle, R., Powell, J. R.: Calibration of the change in thermal stability of DNA duplexes and degree of base-pair mismatch. J. Mol. Evol. 27, 212-216 (1988).
4. Felsenstein, J.: Evolutionary trees from DNA sequences: a maximum likelihood approach. J. Mol. Evol. 17, 368-376 (1981).
5. Felsenstein, J.: PHYLIP - phylogeny inference package (version 3.2). Cladistics. 5, 387-395 (1989).
6. Graf, J.: Symbiosis of Aeromonas veronii biovar sobria and Hirudo medicinalis, the medicinal leech: a novel model for digestive tract associations. Infect. Immun. 67, 1-7 (1999).
7. Grimont, P. A. D., Popoff, M. Y., Grimont, E, Coynault, C., Lemelin, M.: Reproducibility and correlation study of three deoxyribonucleic acid hybridization procedures. Curr. Microbiol. 4, 325-330 (1980).
8. Hauben, L., Vauterin, L., Swings, J., Moore, E. R. B.: Comparison of 16S ribosomal DNA sequences of all Xanthomonas species. Int. J. Syst. Bacteriol. 47, 328-335 (1997).
9. Huys, G., Kampfer, P., Altwegg, M., Kesters, I., Lamb, A., Coopman, R., Luthy-Hottenstein, J., Vancanneyt, M., Janssen, P., Kersters, K.: Aeromonas popoffii sp. nov., a mesophilic bacterium isolated from drinking water production plants and reservoirs. Int. J. Syst. Bacteriol. 47, 1165-1171 (1997).
10. Janda, J. M., Abbott, S. L.: Evolving concepts regarding the genus Aeromonas: an expqanding panorama of species, disease presentations, and unanswered questions. Clin. Infect. Diseases. 27, 332-344 (1998).
11. Johnson, J. L.: Use of nucleic acid homologies in the taxonomy of anaerobic bacteria. Int. J. Syst. Bacteriol. 23, 308-315 (1973).
12. Kasai, H., Ezaki, T., Harayama, S.: Differentiation of phylogenetically related slowly growing Mycobacteria by their gyrB sequences. J. Clin. Micobiol. 38, 301-308 (2000).
13. Keswani, J., Whitman, W. B.: Relationship of 16S rRNA sequences similarity to DNA hybridization in prokaryotes. Int. J. Syst. Evol. Microbiol. 51, 667-678 (2001).
14. Khan, A. A., Nawaz, M. S., Khan, S. A., Cerniglia, C. E.: Identification of Aeromonas trota (hybridization group 13) by amplification of the aerolysin gene using polymerase chain reaction. Mol. Cell. Prob. 13, 93-98 (1999).
15. Kingombe, G. I. B., Huys, G., Tonolla, M., Albert, M. J., Swings, J., Peduzzi, R., Jemmi, T.: PCR detection, characterization, and distribution of virulence genes in Aeromonas spp. Appl. Environ. Microbiol. 65, 5293-5302 (1999).
16. Kreig, N. R., Holt, J. G.: Bergey's manual of systematic bacteriology. Baltimore, Williams & Wilkins 1984.
17. Martinez-Murcia, A. J., Benlloch, S., Collins, M. D.: Phylogenetic interrelationships of members of the genera Aeromonas and Plesiomonas as determined by 16S ribosomal DNA sequencing: lack of congruence with results of DNA-DNA hybridizations. Int. J. Syst. Bacteriol. 42, 412-421 (1992).
18. Olsen, G. J., Matsuda, H., Hagstrom, R., Overbeek, R.: fastDNAml: A tool for construction of phylogenetic trees of DNA sequences using maximum likelihood. Comput. Appl. Biosci. 10, 41-48 (1994).
19. T), from the midgut of Culex quinquefasciatus. Int. J. Syst. Evol. Microbiol. 53, 1723-1728 (2002).
20. Pitcher, D. G., Saunders, N. A., Owen, R. J.: Rapid extraction of bacterial genomic DNA with guanidine thiocyanate. Lett. Appl. Microbiol. 8, 151-156 (1989).
21. nd ed. N.Y., Cold Spring Harbor Laboratory 1989.
22. Sneath, P. H. A., Sokal, R. R.: Numerical Taxonomy: the principles and practice of numerical classification. San Fransisco, W.H. Freeman 1973.
23. Sneath, P. H. A.: Analysis and interpretation of sequence data for bacterial systematics: the view of a numerical taxonomist. Syst. Appl. Microbiol. 12, 15-31 (1989).
24. Sneath, P. H. A.: Evidence from Aeromonas for genetic cross-over in ribosomal sequences. Int. J. Syst. Bacteriol. 43, 626-629 (1993).
25. Venkateswaran, K., Dohmoto, N., Harayama, S.: Cloning and nucleotide sequence of the gyrB gene of Vibrio parahaemolyticus and its application in detection of this pathogen in shrimp. Appl. Environ. Microbiol. 64, 681-687 (1998).
26. Yamada, S., Ohashi, E., Agata, N., Venkateswaran, K.: Cloning and nucleotide sequence analysis of gyrB of Bacillus cereus, B. thuringiensis, B. mycoides, and B. anthracis and their application to the detection of B. cereus in rice. Appl. Environ. Microbiol. 65, 1483-1490 (1999).
27. Yamamoto, S., Bouvet, P. J. M., Harayama, S.: Phylogenetic structure of the genus Acinetobacter based on gyrB sequences: comparison with the grouping by DNA-DNA hybridization. Int. J. Syst. Bacteriol. 49, 87-95 (1999).
28. Yamamoto, S., Harayama, S.: Phylogenetic analysis of Acinetobacter strains based on the nucleotide sequences of gyrB genes and on the amino acid sequences of their products. Int. J. Syst. Bacteriol. 46, 506-511 (1996).
29. Yamamoto, S., Harayama, S.: Phylogenetic relation of Pseudomonas putida strains deduced from the nucleotide sequences of gyrB, rpoD and 16S rRNA genes. Int. J. Syst. Bacteriol. 48, 813-819 (1998).
30. Yamamoto, S., Kasai, H., Arnold, D. L., Jackson, R. W., Vivian, A., Harayama, S.: Phylogeny of the genus Pseudomonas: intrageneric structure reconstructed from the nucleotide sequences of gyrB and rpoD genes. Microbiology. 146, 2385-2394 (2000).