Identification of basic amino acid residues important for citrate binding by the periplasmic receptor domain of the sensor kinase CitA

Biochemistry

Volumn 42, Issue 19, 2003, Pages 5917-5924

  Gerharz, Tanja ^a   Reinelt, Stefan ^b,c   Kaspar, Sibylle ^a   Scapozza, Leonardo ^b   Bott, Michael ^a  

^a FORSCHUNGSZENTRUM JÜLICH   (Germany)

^b ETH ZURICH   (Switzerland)

^c MAX PLANCK INSTITUTE FOR MEDICAL RESEARCH   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

BINDING ENERGY; BIOSENSORS; ENZYMES; MOLECULAR STRUCTURE; NEGATIVE IONS; PH EFFECTS;

CITRATE BINDING;

AMINO ACIDS;

AMINO ACID; CITRIC ACID; PHOSPHOTRANSFERASE;

AMINO ACID ANALYSIS; ARTICLE; CALORIMETRY; CARBOXY TERMINAL SEQUENCE; CATABOLITE REPRESSION; CIRCULAR DICHROISM; CYTOPLASM; GENE EXPRESSION REGULATION; NONHUMAN; PRIORITY JOURNAL; PROTEIN DOMAIN; PROTEIN PHOSPHORYLATION; PROTEIN SECONDARY STRUCTURE; RESIDUE ANALYSIS; THERMOSTABILITY;

AMINO ACID SEQUENCE; AMINO ACID SUBSTITUTION; AMINO ACIDS, BASIC; BACTERIAL PROTEINS; BASE SEQUENCE; BINDING SITES; CIRCULAR DICHROISM; CITRIC ACID; DNA, BACTERIAL; ESCHERICHIA COLI PROTEINS; KINETICS; KLEBSIELLA PNEUMONIAE; LIGANDS; MOLECULAR SEQUENCE DATA; MUTAGENESIS, SITE-DIRECTED; PERIPLASM; PROTEIN BINDING; PROTEIN KINASES; PROTEIN STRUCTURE, TERTIARY; SEQUENCE HOMOLOGY, AMINO ACID; SPECTROMETRY, MASS, MATRIX-ASSISTED LASER DESORPTION-IONIZATION; THERMODYNAMICS; TRANSCRIPTION FACTORS;

BACTERIA (MICROORGANISMS); KLEBSIELLA; KLEBSIELLA PNEUMONIAE;

EID: 0038290306     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi0340595     Document Type: Article

References (38)

1. Stock, J. B., Ninfa, A. J., and Stock, A. M. (1989) Microbiol. Rev. 53, 450-490.
2. Bourret, R. B., Borkovich, K. A., and Simon, M. I. (1991) Annu. Rev. Biochem. 60, 401-441.
3. Parkinson, J. S., and Kofoid, E. C. (1992) Annu. Rev. Genet. 26, 71-112.
4. Robinson, V. L., Buckler, D. R., and Stock, A. M. (2000) Nature Struct. Biol. 7, 626-633.
5. Bott, M., Meyer, M., and Dimroth, P. (1995) Mol. Microbiol. 18, 533-546.
6. Meyer, M., Dimroth, P., and Bott, M. (1997) J. Mol. Biol. 269, 719-731.
7. Van der Rest, M. E., Siewe, R. M., Abee, T., Schwarz, E., Oesterhelt, D., and Konings, W. N. (1992) J. Biol. Chem. 267, 8971-8976.
8. Bott, M., and Dimroth, P. (1994) Mol. Microbiol. 14, 347-356.
9. Schneider, K., Dimroth, P., and Bott, M. (2000) FEBS Lett. 483, 165-168.
10. Schneider, K., Dimroth, P., and Bott, M. (2000) Biochemistry 39, 9438-9450.
11. Schwarz, E., Oesterhelt, D., Reinke, H, Beyreuther, K., and Dimroth, P. (1988) J. Biol. Chem. 263, 9640-9645.
12. Laussermair, E., Schwarz, E., Oesterhelt, D., Reinke, H., Beyreuther, K., and Dimroth, P. (1989) J. Biol. Chem. 264, 14710-14715.
13. Woehlke, G., Laussermair, E., Schwarz, E., Oesterhelt, D., Reinke, H., Beyreuther, K., and Dimroth, P. (1992) J. Biol. Chem. 267, 22804-22805.
14. Meyer, M., Dimroth, P., and Bott, M. (2001) J. Bacteriol. 183, 5248-5256.
15. Kaspar, S., Perozzo, R., Reinelt, S., Meyer, M., Pfister, K., Scapozza, L., and Bott, M. (1999) Mol. Microbiol. 33, 858-872.
16. Studier, F. W., and Moffatt, B. A. (1986) J. Mol. Biol. 189, 113-130.
17. Sanger, F., Nicklen, S., and Coulson, A. R. (1977) Proc. Natl. Acad. Sci. U.S.A. 74, 5463-5467.
18. Gill, S. C., and von Hippel, P. H. (1989) Anal. Biochem. 182, 319-326.
19. Schaffer, S., Weil, B., Nguyen, V. D., Dongmann, G., Giinther, K., Nickolaus, M., Hermann, T., and Bott, M. (2001) Electrophoresis 22, 4404-4422.
20. Wiseman, T., Williston, S., Brandts, J. F., and Lin, L. N. (1989) Anal. Biochem. 179, 131-137.
21. Pace, N. C., and Scholtz, J. M. (1997) in Protein structure: a practical approach (Creighton, T. E., Ed.), 2nd ed., pp 299-321, University Press, Oxford.
22. Dunitz, J. D. (1995) Chem. Biol. 2, 709-712.
23. Lee, A. L., Kinnear, S. A., and Wand, A. J. (2000) Nature Struct. Biol. 7, 72-77.
24. Remington, S., Wiegand, G., and Huber, R. (1982) J. Mol. Biol. 158, 111-152.
25. Russell, R. J., Ferguson, J. M., Hough, D. W., Danson, M. J., and Taylor, G. L. (1997) Biochemistry 36, 9983-9994.
26. Iwama, T., Nakao, K. I., Nakazato, H., Yamagata, S., Homma, M., and Kawagishi, I. (2000) J. Bacteriol. 182, 1437-1441.
27. Grebe, T. W., and Stock, J. B. (1999) Adv. Microb. Physiol. 41, 139-227.
28. Asai, K., Baik, S. H., Kasahara, Y., Moriya, S., and Ogasawara, N. (2000) Microbiology 146, 263-271.
29. Kaspar, S., and Bott, M. (2002) Arch. Microbiol. 177, 313-321.
30. Wootton, J. C., and Drummond, M. H. (1989) Prot. Eng. 2, 535-543.
31. Taylor, B. L., and Zhulin, I. B. (1999) Microbiol. Mol. Biol. Rev. 63, 479-506.
32. Indyk, L., and Fisher, H. F. (1998) Methods Enzymol. 295, 350-364.
33. Ingmer, H., Miller, C. A., and Cohen, S. N. (1998) Mol. Microbiol. 29, 49-59.
34. Oshima, T., Aiba, H., Masuda, Y., Kanaya, S., Sugiura, M., Wanner, B. L., Mori, H., and Mizuno, T. (2002) Mol. Microbiol. 46, 281-291.
35. Zientz, E., Bongaerts, J., and Unden, G. (1998) J. Bacteriol. 180, 5421-5425.
36. Golby, P., Davies, S., Kelly, D. J., Guest, J. R., and Andrews, S. C. (1999) J. Bacteriol. 181, 1238-1248.
37. Janausch, I. G., Garcia-Moreno, I., and Unden, G. (2002) J. Biol. Chem. 277, 39809-39814.
38. Yamamoto, H., Murata, M., and Sekiguchi, J. (2000) Mol. Microbiol. 37, 898-912.