Metropolis Importance Sampling for Rugged Dynamical Variables

Physical Review Letters

Volumn 90, Issue 18, 2003, Pages 4-

  Berg, Bernd A ^a  

^a Florida State University   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

APPROXIMATION THEORY; COMPUTER SIMULATION; DYNAMICS; PROBABILITY; PROTEINS; TEMPERATURE;

FUNNEL TRANSFORMATION; METROPOLIS SIMULATION; PROTEIN MODELS;

PHYSICAL CHEMISTRY;

ALGORITHM; CHEMICAL MODEL; COMPUTER SIMULATION; PROTEIN FOLDING; TEMPERATURE;

ALGORITHMS; COMPUTER SIMULATION; MODELS, CHEMICAL; PROTEIN FOLDING; TEMPERATURE;

EID: 0038266214     PISSN: 00319007     EISSN: 10797114     Source Type: Journal    
DOI: 10.1103/PhysRevLett.90.180601     Document Type: Article

References (22)

1. D. Bryngelson and P.G. Wolynes, Proc. Natl. Acad. Sci. U.S.A.PNASA6 84, 7524 (1987).
2. N.D. Socci, J.N. Onuchic, and P.G. Wolynes, J. Chem. Phys.JCPSA610.1063/1.471317 104, 5860 (1996).
3. U.H. Hansmann, Y. Okamoto, and J.N. Onuchic, Proteins: Struct., Funct., Genet.10.1002/(SICI)1097-0134(19990301)34:4<472::AID-PROT7>3.0.CO;2-X 34, 472 (1999).
4. U.H. Hansmann and J.N. Onuchic, J. Chem. Phys.JCPSA610.1063/1.1379757 115, 1601 (2001).
5. N. Metropolis, A.W. Rosenbluth, M.N. Rosenbluth, A.H. Teller, and E. Teller, J. Chem. Phys.JCPSA6 21, 1087 (1953).
6. M.J. Sippl, G. Nemethy, and H.A. Scheraga, J. Phys. Chem. 88, 6231 (1984), and references therein.
7. D. Frenkel and B. Smit, Understanding Molecular Simulation (Academic Press, San Diego, 1996).
8. A.D. Bruce, J. Phys. AJPHAC5 18, L873 (1985).
9. A. Milchev, D.W. Heermann, and K. Binder, J. Stat. Phys. 44, 749 (1986).
10. Z. Li and H.A. Scheraga, Proc. Natl. Acad. Sci. U.S.A.PNASA6 85, 6611 (1987).
11. Y. Okamoto, T. Kikuchi, and H. Kawai, Chem. Lett. 1992, 1275 (1992).
12. U.H. Hansmann and Y. Okamoto, J. Comput. Chem. 14, 1333 (1993).
13. H. Meirovitch, E. Meirovitch, A.G. Michel, and M. Vásquez, J. Phys. Chem. 98, 6241 (1994).
14. F. Eisenmenger, U.H. Hansmann, S. Hayryan, and C.-K. Hu, Comput. Phys. Commun.10.1016/S0010-4655(01)00197-7 138, 192 (2001).
15. T. Ooi, M. Oobatake, G. Nemethy, and H.A. Scheraga, Proc. Natl. Acad. Sci. U.S.A.PNASA6 84, 3086 (1987).
16. A. Sokal, in Functional Integration: Basics and Applications, edited by C. DeWitt-Morette, P. Cartier, and A. Folacci, Cargese Summer School (Plenum Press, New York, 1997), pp.�131–192.
17. B.A. Berg, H.P. Hsu, and P. Grassberger (to be published).
18. A. Mitsutake, Y. Sugita, and Y. Okamoto, Biopolymers10.1002/1097-0282(2001)60:2<96::AID-BIP1007>3.0.CO;2-F 60, 96 (2001).
19. B.A. Berg and T. Celik, Phys. Rev. Lett.10.1103/PhysRevLett.69.2292 69, 2292 (1992).
20. G.J. Geyer, in Computing Science and Statistics, Proceedings of the 23rd Symposium on the Interface, edited by E.M. Keramidis (Interface Foundation, Fairfax, VA, 1991), pp.�156–163.
21. K. Hukushima and K. Nemoto, J. Phys. Soc. Jpn. 65, 1604 (1996).
22. S. Brandt, Statistical and Computational Methods in Data Analysis (North-Holland Publishing Company, Amsterdam, 1983).