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Volumn 20, Issue 6, 2003, Pages 1006-1013

Repetitive sequences in the crocodilian mitochondrial control region: Poly-A sequences and heteroplasmic tandem repeats

Author keywords

Crocodylia; Crocodylus; Heteroplasmy; Mitochondrial control region; VNTR

Indexed keywords

ALLIGATOR; ARTICLE; BLOOD SAMPLING; CONTROLLED STUDY; GENE SEQUENCE; GENETIC ANALYSIS; HAPLOTYPE; HETEROPLASMY; MOLECULAR EVOLUTION; NONHUMAN; NUCLEOTIDE SEQUENCE; POLYMERASE CHAIN REACTION; PROTEIN SECONDARY STRUCTURE; SEQUENCE ANALYSIS; SEQUENCE HOMOLOGY; TANDEM REPEAT;

EID: 0038247840     PISSN: 07374038     EISSN: None     Source Type: Journal    
DOI: 10.1093/molbev/msg117     Document Type: Article
Times cited : (24)

References (40)
  • 1
    • 0019423856 scopus 로고
    • Sequence and organization of the human mitochondrial genome
    • 14 co-authors
    • Anderson, S., A. T. Bankier, B. G. Barrell et al. (14 co-authors). 1981. Sequence and organization of the human mitochondrial genome. Nature 290:457-465.
    • (1981) Nature , vol.290 , pp. 457-465
    • Anderson, S.1    Bankier, A.T.2    Barrell, B.G.3
  • 2
    • 0026670562 scopus 로고
    • Heteroplasmy of short tandem repeats in mitochondrial DNA of Atlantic cod, Gadus morhua
    • Arnason, E., and D. M. Rand. 1992. Heteroplasmy of short tandem repeats in mitochondrial DNA of Atlantic cod, Gadus morhua. Genetics 132:211-220.
    • (1992) Genetics , vol.132 , pp. 211-220
    • Arnason, E.1    Rand, D.M.2
  • 3
    • 0002801624 scopus 로고
    • Survey methods and monitoring within crocodile managementprogrammes
    • G. J. Webb, S. C. Manolis, and P. J. Whitehead, eds. Surrey Beatty and Sons, Sydney, Australia
    • Bayliss, P. 1987. Survey methods and monitoring within crocodile managementprogrammes. Pp.157-175 in G. J. Webb, S. C. Manolis, and P. J. Whitehead, eds. Wildlife management: crocodiles and alligators. Surrey Beatty and Sons, Sydney, Australia.
    • (1987) Wildlife Management: Crocodiles and Alligators , pp. 157-175
    • Bayliss, P.1
  • 4
    • 0035109346 scopus 로고    scopus 로고
    • Mitochondrial genome instability in human cancers
    • Bianchi, N. O., M. S. Bianchi, and S. M. Richard. 2001. Mitochondrial genome instability in human cancers. Mutat. Res. 1:9-23.
    • (2001) Mutat. Res. , vol.1 , pp. 9-23
    • Bianchi, N.O.1    Bianchi, M.S.2    Richard, S.M.3
  • 5
    • 0034604438 scopus 로고    scopus 로고
    • Phylogenetic relationships and divergence timing of Crocodylus based on morphology and the fossil record
    • Brochu, C. 2000. Phylogenetic relationships and divergence timing of Crocodylus based on morphology and the fossil record. Copeia 2000:657-673.
    • (2000) Copeia , vol.2000 , pp. 657-673
    • Brochu, C.1
  • 6
    • 0012276491 scopus 로고    scopus 로고
    • Crocodile phylogenetics: A review of current progress
    • G. Grigg, F. Seebacher, C. Franklin, eds.Surrey Beatty and Sons, Chipping Norton, Australia
    • Brochu, C., and L. Densmore. 2001. Crocodile phylogenetics: a review of current progress. Pp. 3-8 in G. Grigg, F. Seebacher, C. Franklin, eds. Crocodilian biology and evolution. Surrey Beatty and Sons, Chipping Norton, Australia.
    • (2001) Crocodilian Biology and Evolution , pp. 3-8
    • Brochu, C.1    Densmore, L.2
  • 8
    • 0026713903 scopus 로고
    • Mitochondrial length variation and heteroplasmy in populations of white sturgeon (Acipenser transmontanus)
    • Brown, J. R., A. T. Beckenbach, and M. J. Smith. 1992. Mitochondrial length variation and heteroplasmy in populations of white sturgeon (Acipenser transmontanus). Genetics 13: 221-228.
    • (1992) Genetics , vol.13 , pp. 221-228
    • Brown, J.R.1    Beckenbach, A.T.2    Smith, M.J.3
  • 9
    • 0022979903 scopus 로고
    • Structural conservation and variation in the D-loop-containing region of vertebrate mitochondrial DNA
    • Brown, G. G., G. Gadaleta, G. Pepe, C. Saccone, and E. Sbisa. 1986. Structural conservation and variation in the D-loop-containing region of vertebrate mitochondrial DNA. J. Mol. Biol. 192:503-511.
    • (1986) J. Mol. Biol. , vol.192 , pp. 503-511
    • Brown, G.G.1    Gadaleta, G.2    Pepe, G.3    Saccone, C.4    Sbisa, E.5
  • 12
    • 0030950570 scopus 로고    scopus 로고
    • Mitochondrial DNA length variation and heteroplasmy in natural populations of the European sea bass, Dicentrarchus labrax
    • Cesaroni, D., F. Venanzetti, G. Allegrucci, and V. Sbordoni. 1997. Mitochondrial DNA length variation and heteroplasmy in natural populations of the European sea bass, Dicentrarchus labrax. Mol. Biol. Evol. 14:560-568.
    • (1997) Mol. Biol. Evol. , vol.14 , pp. 560-568
    • Cesaroni, D.1    Venanzetti, F.2    Allegrucci, G.3    Sbordoni, V.4
  • 13
    • 0000927769 scopus 로고
    • Biochemical and immunological systematics of the order Crocodilia
    • M. K. Hecht, B. Wallace, and G. T. Prance, eds. Plenum Press, New York
    • Densmore, L. D. 1983. Biochemical and immunological systematics of the order Crocodilia. Pp. 397-465 in M. K. Hecht, B. Wallace, and G. T. Prance, eds. Evolutionary biology, Vol. 16. Plenum Press, New York.
    • (1983) Evolutionary Biology , vol.16 , pp. 397-465
    • Densmore, L.D.1
  • 14
    • 0001643136 scopus 로고
    • Molecular systematics of the order Crocodilia
    • Densmore, L. D., and R. D. Owen. 1989. Molecular systematics of the order Crocodilia. Am. Zool. 29:831-841.
    • (1989) Am. Zool. , vol.29 , pp. 831-841
    • Densmore, L.D.1    Owen, R.D.2
  • 15
    • 0001340979 scopus 로고
    • The systematics and evolution of the Crocodilia as suggested by restriction endonuclease analysis of mitochondrial and nuclear ribosomal DNA
    • Densmore, L. D., and P. S. White. 1991. The systematics and evolution of the Crocodilia as suggested by restriction endonuclease analysis of mitochondrial and nuclear ribosomal DNA. Copeia 1991:602-615.
    • (1991) Copeia , vol.1991 , pp. 602-615
    • Densmore, L.D.1    White, P.S.2
  • 16
    • 0012353175 scopus 로고
    • Elongation of displacement-loop strands in human and mouse mitochondrial DNA is arrested near specific template sequences
    • Doda, J. N., C. T. Wright, and D. A. Clayton. 1981. Elongation of displacement-loop strands in human and mouse mitochondrial DNA is arrested near specific template sequences. Proc Natl. Acad. Sci. USA 78:6116-6120.
    • (1981) Proc. Natl. Acad. Sci. USA , vol.78 , pp. 6116-6120
    • Doda, J.N.1    Wright, C.T.2    Clayton, D.A.3
  • 17
  • 18
    • 0023943474 scopus 로고
    • Comparisons of ape and human sequences that regulate mitochondrial DNA transcription and D-loop synthesis
    • Foran, D. R., J. E. Hixson, and W. M. Brown. 1988. Comparisons of ape and human sequences that regulate mitochondrial DNA transcription and D-loop synthesis. Nucleic Acids Res. 16:5841-5861.
    • (1988) Nucleic Acids Res. , vol.16 , pp. 5841-5861
    • Foran, D.R.1    Hixson, J.E.2    Brown, W.M.3
  • 19
    • 0000618389 scopus 로고
    • A method of obtaining blood by vein puncture from large reptiles
    • Gorzula, S., C. L. Arocha-Pinango, and C. Salazar. 1976. A method of obtaining blood by vein puncture from large reptiles. Copeia 1976:838-839.
    • (1976) Copeia , vol.1976 , pp. 838-839
    • Gorzula, S.1    Arocha-Pinango, C.L.2    Salazar, C.3
  • 20
    • 0002051540 scopus 로고    scopus 로고
    • BioEdit: A user-friendly biological sequence alignment editor and analysis program for Windows 95/98/ NT
    • Hall, T. A. 1999. BioEdit: A user-friendly biological sequence alignment editor and analysis program for Windows 95/98/ NT. Nucleic Acids Symp. Ser. 41:95-98.
    • (1999) Nucleic Acids Symp. Ser. , vol.41 , pp. 95-98
    • Hall, T.A.1
  • 21
    • 0027226217 scopus 로고
    • Generation of VNTRs and heteroplasmy by sequence turnover in the mitochondrial control region of two elephant seal species
    • Hoelzel, A. R., J. M. Hancock, and G. A. Dover. 1993. Generation of VNTRs and heteroplasmy by sequence turnover in the mitochondrial control region of two elephant seal species. J. Mol. Evol. 37:190-197.
    • (1993) J. Mol. Evol. , vol.37 , pp. 190-197
    • Hoelzel, A.R.1    Hancock, J.M.2    Dover, G.A.3
  • 22
    • 0030778833 scopus 로고    scopus 로고
    • The complete mitochondrial genome of Alligator mississippiensis and the separation between recent Archosauria (birds and crocodiles)
    • Janke A., and U. Arnason. 1997. The complete mitochondrial genome of Alligator mississippiensis and the separation between recent Archosauria (birds and crocodiles). Mol. Biol. Evol. 14:1266-1272.
    • (1997) Mol. Biol. Evol. , vol.14 , pp. 1266-1272
    • Janke, A.1    Arnason, U.2
  • 23
    • 0035932330 scopus 로고    scopus 로고
    • The mitochondrial genome of the iguana (Iguana iguana) and the caiman (Caiman crocodylus): Implications for amniote phylogeny
    • Janke, A., D. Frpenbeck, M. Nilsson, and U. Arnason. 2001. The mitochondrial genome of the iguana (Iguana iguana) and the caiman (Caiman crocodylus): implications for amniote phylogeny. Proc. R. Soc. Lond. B Biol. Sci. 268: 623-631.
    • (2001) Proc. R. Soc. Lond. B Biol. Sci. , vol.268 , pp. 623-631
    • Janke, A.1    Frpenbeck, D.2    Nilsson, M.3    Arnason, U.4
  • 24
    • 0030951244 scopus 로고    scopus 로고
    • Tissue-specific selection for different mtDNA genotypes in heteroplasmic mice
    • Jenuth, J. P., A. C. S. Peterson, and E. A. Houbridge. 1997. Tissue-specific selection for different mtDNA genotypes in heteroplasmic mice. Nat. Genet. 16:93-95.
    • (1997) Nat. Genet. , vol.16 , pp. 93-95
    • Jenuth, J.P.1    Peterson, A.C.S.2    Houbridge, E.A.3
  • 25
    • 0023644820 scopus 로고
    • Mapping of control elements in the displacement loop region of bovine mitochondrial DNA
    • King, T. C., and R. L. Low. 1987. Mapping of control elements in the displacement loop region of bovine mitochondrial DNA. J. Biol. Chem. 262:6204-6213.
    • (1987) J. Biol. Chem. , vol.262 , pp. 6204-6213
    • King, T.C.1    Low, R.L.2
  • 26
    • 0034939077 scopus 로고    scopus 로고
    • Direct evidence for homologous recombination in mussel (Mytilus galloprovincialis) mitochondrial DNA
    • Ladoukakis, E. D., and E. Zouros. 2001. Direct evidence for homologous recombination in mussel (Mytilus galloprovincialis) mitochondrial DNA. Mol. Biol. Evol. 18:1168-1175.
    • (2001) Mol. Biol. Evol. , vol.18 , pp. 1168-1175
    • Ladoukakis, E.D.1    Zouros, E.2
  • 27
    • 0023256559 scopus 로고
    • Slipped-strand mispairing: A major mechanism for DNA sequence evolution
    • Levinson, G., and G. A. Gutman. 1987. Slipped-strand mispairing: a major mechanism for DNA sequence evolution. Mol. Biol. Evol. 4:203-221.
    • (1987) Mol. Biol. Evol. , vol.4 , pp. 203-221
    • Levinson, G.1    Gutman, G.A.2
  • 28
    • 0030953174 scopus 로고    scopus 로고
    • Animal mitochondrial DNA recombination
    • Lunt, D. H., and B. C. Hyman. 1997. Animal mitochondrial DNA recombination. Nature 387:247.
    • (1997) Nature , vol.387 , pp. 247
    • Lunt, D.H.1    Hyman, B.C.2
  • 29
    • 0032211421 scopus 로고    scopus 로고
    • Mitochondrial DNA variable number tandem repeats (VNTRs): Utility and problems in molecular ecology
    • Lunt, D. H., L. E. Whipple, and B. C. Hyman. 1998. Mitochondrial DNA variable number tandem repeats (VNTRs): utility and problems in molecular ecology. Mol. Ecol. 7:1441-1455.
    • (1998) Mol. Ecol. , vol.7 , pp. 1441-1455
    • Lunt, D.H.1    Whipple, L.E.2    Hyman, B.C.3
  • 30
    • 0033591465 scopus 로고    scopus 로고
    • Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure
    • Mathews, D. H., J. Sabina, M. Zuker, and D. H. Turner. 1999. Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure. J. Mol. Biol. 288:911-940.
    • (1999) J. Mol. Biol. , vol.288 , pp. 911-940
    • Mathews, D.H.1    Sabina, J.2    Zuker, M.3    Turner, D.H.4
  • 31
    • 0029914821 scopus 로고    scopus 로고
    • Tandem repeats and heteroplasmy in the mitochondrial DNA control region of the loggerhead shrike (Lanius ludovicianus)
    • Mundy, N. I., C. S. Winchell, and D. S. Woodruff. 1996. Tandem repeats and heteroplasmy in the mitochondrial DNA control region of the loggerhead shrike (Lanius ludovicianus). J. Heredity. 87:21-26.
    • (1996) J. Heredity , vol.87 , pp. 21-26
    • Mundy, N.I.1    Winchell, C.S.2    Woodruff, D.S.3
  • 32
    • 0035824863 scopus 로고    scopus 로고
    • Expansion/contraction of mammalian mitochondrial DNA repeatsin Escherichia coli mimics the mitochondrial heteroplasmy
    • Pfeuty, A., M. Gueride, and G. Lecellier. 2001. Expansion/contraction of mammalian mitochondrial DNA repeats in Escherichia coli mimics the mitochondrial heteroplasmy. J. Mol. Biol. 341:709-716.
    • (2001) J. Mol. Biol. , vol.341 , pp. 709-716
    • Pfeuty, A.1    Gueride, M.2    Lecellier, G.3
  • 33
    • 0024637614 scopus 로고
    • Molecular population genetics of mtDNA size variation in crickets
    • Rand, D. M., and R. G. Harrison. 1989. Molecular population genetics of mtDNA size variation in crickets. Genetics 121: 551-569.
    • (1989) Genetics , vol.121 , pp. 551-569
    • Rand, D.M.1    Harrison, R.G.2
  • 34
    • 0037115476 scopus 로고    scopus 로고
    • The crocodilian mitochondrial control region: General structure, conserved sequences and evolutionary implications
    • Ray, D. A., and L. D. Densmore. 2002. The crocodilian mitochondrial control region: general structure, conserved sequences and evolutionary implications. J. Exp. Zool. (Mol. Dev. Evol.) 294:334-345.
    • (2002) J. Exp. Zool. (Mol. Dev. Evol.) , vol.294 , pp. 334-345
    • Ray, D.A.1    Densmore, L.D.2
  • 35
    • 0033848345 scopus 로고    scopus 로고
    • A repeat complex in the mitochondrial control region of Adelie penguins from Antarctica
    • Ritchie P. A., and D. M. Lambert. 2000. A repeat complex in the mitochondrial control region of Adelie penguins from Antarctica. Genome 43:613-618.
    • (2000) Genome , vol.43 , pp. 613-618
    • Ritchie, P.A.1    Lambert, D.M.2
  • 36
    • 0035476227 scopus 로고    scopus 로고
    • Identification of a mononucleotide repeat as a major target for mitochondrial DNA alterations in human tumors
    • 11 co-authors
    • Sanchez-Cespedes, M., P. Parrella, S. Nomoto et al. (11 co-authors). 2001. Identification of a mononucleotide repeat as a major target for mitochondrial DNA alterations in human tumors. Cancer Res. 61:7015-7019.
    • (2001) Cancer Res. , vol.61 , pp. 7015-7019
    • Sanchez-Cespedes, M.1    Parrella, P.2    Nomoto, S.3
  • 37
    • 0031593240 scopus 로고    scopus 로고
    • Mammalian mitochondrial D-loop region structural analysis: Identification of new conserved sequences and their functional and evolutionary implications
    • Sbisa, E., F. Tanzariello, A. Reyes, G, Pesole, and C Saccone. 1997. Mammalian mitochondrial D-loop region structural analysis: identification of new conserved sequences and their functional and evolutionary implications. Gene 205: 125-140.
    • (1997) Gene , vol.205 , pp. 125-140
    • Sbisa, E.1    Tanzariello, F.2    Reyes, A.3    Pesole, G.4    Saccone, C.5
  • 39
    • 0019887587 scopus 로고
    • Sequence and properties of the human KB cell and mouse L cell D-loop regions of mitochondrial DNA
    • Walberg, M. W., and D. A. Clayton. 1981. Sequence and properties of the human KB cell and mouse L cell D-loop regions of mitochondrial DNA. Nucleic Acids Res. 9:5411-5421.
    • (1981) Nucleic Acids Res. , vol.9 , pp. 5411-5421
    • Walberg, M.W.1    Clayton, D.A.2


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